mRNA_P-littoralis_Contig611.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig611.38.1
Unique NamemRNA_P-littoralis_Contig611.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig611.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig611contigP-littoralis_Contig611:159821..160815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size274
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791275.3713202-UTR-P-littoralis_Contig611:159820..1598771680791275.3713202-UTR-P-littoralis_Contig611:159820..159877Pylaiella littoralis U1_48UTRP-littoralis_Contig611 159821..159877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791275.3854864-CDS-P-littoralis_Contig611:159877..1600211680791275.3854864-CDS-P-littoralis_Contig611:159877..160021Pylaiella littoralis U1_48CDSP-littoralis_Contig611 159878..160021 -
1680791275.398876-CDS-P-littoralis_Contig611:160743..1608151680791275.398876-CDS-P-littoralis_Contig611:160743..160815Pylaiella littoralis U1_48CDSP-littoralis_Contig611 160744..160815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig611.38.1prot_P-littoralis_Contig611.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig611 159878..160815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig611.38.1

>prot_P-littoralis_Contig611.38.1 ID=prot_P-littoralis_Contig611.38.1|Name=mRNA_P-littoralis_Contig611.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
SILIGKDSTQVRSLVGVSSHYSLEKVYEFLDAEGAATHVVFYDKREGSGL
KQTGERVSHRMAFFAVSMVCF*
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mRNA from alignment at P-littoralis_Contig611:159821..160815-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig611.38.1 ID=mRNA_P-littoralis_Contig611.38.1|Name=mRNA_P-littoralis_Contig611.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=995bp|location=Sequence derived from alignment at P-littoralis_Contig611:159821..160815- (Pylaiella littoralis U1_48)
TCCATCCTTATCGGCAAGGATTCAACACAAGTTCGTAGTCTTGTGGGAGT
GAGCTCCCACTACTCTCTGGAGGTGAGATTCATGCCACTGCTGTACAAGT
AGCTGCAGCAGGAGCGTCGAACTGCGGTGGTAGGCATGCACAGCTCAGAG
AACAGGAGAAGTCCTTACCTCAACCAAAACGGGGCTTGTTCGCCCTTGTT
CGCCCTTGATTCGTGCTGCCGGTAACATTTCAGGAAAGTCACATTCATAA
ACTCGCCCCATTTTTGAAGTAAGACATCGCGTGAACATCCTCCCTCGTGT
AAAAAGGGAACTTGTACAATCGTGTTTGAAAGGGTAAGATAATGGGGAAA
GGCTTGGCTCTCACTAGTGTAGAGTGCCTCGCATGACACATGAATACCAT
TACCATAATGCGCAAGCACCTTTCAGATTTTCGATTTTCAGAAGATCATC
CCCACCGTGGTTTTTTGCTGGTATTTTTTGCTGGATCTTCAGGGGTTACC
TAGGCCGCCGCCGCAGCCGGTCCAACCCGTTCGCTAACATGAGGCCCAGG
GCTCGTTCTTTGGAGGCCGTGAAAATATTTGTGTTCGTGAAATGCTACAG
ATCGACGTATGACGTACTCCCGACGGAGCCGATGCCAGTATTGATTCCGT
CGGGTATGTGAGCAAGGAGACTCCTTCATGCCCCCCCCTTTGTATTTCGC
CTGCGCTTCCTCACACGAATATGCTCAAGTACAGACGGCCGTCTGACCCG
TTATTTTTATTGTGCGCGTGAACCCCCATATTACTTCCGAACAGAAGGTT
TACGAATTTTTGGATGCAGAGGGCGCCGCGACACATGTGGTGTTTTACGA
CAAACGAGAGGGCAGCGGATTGAAACAAACTGGAGAAAGGGTCAGCCATA
GAATGGCGTTTTTCGCGGTATCAATGGTTTGTTTTTGACGCTGATGGTGT
TGCGCACTGCCGTTCCGATGGTGGTGGCGTCGACCCTCTTTGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig611:159821..160815-

>mRNA_P-littoralis_Contig611.38.1 ID=mRNA_P-littoralis_Contig611.38.1|Name=mRNA_P-littoralis_Contig611.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig611:159821..160815- (Pylaiella littoralis U1_48)
TCCATCCTTATCGGCAAGGATTCAACACAAGTTCGTAGTCTTGTGGGAGT
GAGCTCCCACTACTCTCTGGAGAAGGTTTACGAATTTTTGGATGCAGAGG
GCGCCGCGACACATGTGGTGTTTTACGACAAACGAGAGGGCAGCGGATTG
AAACAAACTGGAGAAAGGGTCAGCCATAGAATGGCGTTTTTCGCGGTATC
AATGGTTTGTTTTTGA
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