|
|
Homology
BLAST of mRNA_P-littoralis_Contig61.106.2 vs. uniprot
Match: D7FYL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL0_ECTSI) HSP 1 Score: 367 bits (942), Expect = 1.260e-118 Identity = 209/348 (60.06%), Postives = 243/348 (69.83%), Query Frame = 1
Query: 4 QGRRSRGAHGPATPPSWLLSSRTAVSRVRALSSSGSTPGDGEAAPAAAAAAVGDSKLGGDFPWRTAPDQFVEPMGSGSFLDGIMEAIFHEFCLKGVDFTTGAEAAFVTTAAAYFRMSPSEVRAPKPVEGEKAAXXXXXXXXXXXXXXXXXXVGAEGASSTGDAGEKPSAAAPXXXXXXXXXXXXXXETSEEEVERVLAAIDSGLVALSGDKEGVPFYRLHSVVAKAITRKKYILGVRRGDDLSNRFSVSMSPSLDIVLEENKAFAQIKNTLAGNATITFQVDVDVDCDETFYVKDKESGEVIQGKEESAGRRHRVRLESHHVLSDQSIEQPHVWKVVDLDNWLKGNAF 1047
QG+RS HG +P S LLS A + RA S S S PG+ AAAAV +K GGDFPWR AP+ EP GSGSFLDGIME+IF +FC KGVDFT GAEAAFVTTAAA F+M +VRAPKP AA G +GA G + SA A ETSEEE +RVLAA+D GLVALS DK GVP+YRLH VVAKAI RKK+I GV+RGDDLS RF+V+MSPSL+ VL+EN AFAQI+N LAGN T+TFQVDVD+ CDETFYVKDKE+GE+IQGK+ES+GR HRVRLES +L +Q+IEQPH+WKV+DLD+WLKGNAF
Sbjct: 22 QGKRSLREHGRMSPASSLLSQAPAAMQGRAFSGSASGPGE-------AAAAVDMAKPGGDFPWRGAPNLIPEPAGSGSFLDGIMESIFEDFCFKGVDFTAGAEAAFVTTAAALFKMRTLKVRAPKPSVEAAAA-------------------GVDGAPKGGVEEDPASAGA----EQEEEDKEKSAETSEEEADRVLAAVDKGLVALSSDKGGVPYYRLHRVVAKAIRRKKFIFGVQRGDDLSGRFTVAMSPSLEFVLQENNAFAQIRNALAGNVTVTFQVDVDLACDETFYVKDKETGEIIQGKKESSGRIHRVRLESC-LLMEQAIEQPHIWKVIDLDDWLKGNAF 338
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2056 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-02_004410.1 |
| Cds size | 831 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791271.8906326-UTR-P-littoralis_Contig61:584274..584496 | 1680791271.8906326-UTR-P-littoralis_Contig61:584274..584496 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig61 584275..584496 + |
| 1680791271.9833126-UTR-P-littoralis_Contig61:590005..591008 | 1680791271.9833126-UTR-P-littoralis_Contig61:590005..591008 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig61 590006..591008 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791271.9101079-CDS-P-littoralis_Contig61:584496..584574 | 1680791271.9101079-CDS-P-littoralis_Contig61:584496..584574 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig61 584497..584574 + |
| 1680791271.9229019-CDS-P-littoralis_Contig61:585391..585632 | 1680791271.9229019-CDS-P-littoralis_Contig61:585391..585632 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig61 585392..585632 + |
| 1680791271.9324422-CDS-P-littoralis_Contig61:586041..586205 | 1680791271.9324422-CDS-P-littoralis_Contig61:586041..586205 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig61 586042..586205 + |
| 1680791271.9421473-CDS-P-littoralis_Contig61:586993..587191 | 1680791271.9421473-CDS-P-littoralis_Contig61:586993..587191 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig61 586994..587191 + |
| 1680791271.954231-CDS-P-littoralis_Contig61:587925..588030 | 1680791271.954231-CDS-P-littoralis_Contig61:587925..588030 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig61 587926..588030 + |
| 1680791271.9704554-CDS-P-littoralis_Contig61:589960..590005 | 1680791271.9704554-CDS-P-littoralis_Contig61:589960..590005 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig61 589961..590005 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig61.106.2 >prot_P-littoralis_Contig61.106.2 ID=prot_P-littoralis_Contig61.106.2|Name=mRNA_P-littoralis_Contig61.106.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp
MGSGSFLDGIMEAIFHEFCLKGVDFTTGAEAAFVTTAAAYFRMSPSEVRA PKPVEGEKAAAAVAAAAAAETEAAAATVVGAEGASSTGDAGEKPSAAAPA PAADPAAEKQPSAETSEEEVERVLAAIDSGLVALSGDKEGVPFYRLHSVV AKAITRKKYILGVRRGDDLSNRFSVSMSPSLDIVLEENKAFAQIKNTLAG NATITFQVDVDVDCDETFYVKDKESGEVIQGKEESAGRRHRVRLESHHVL SDQSIEQPHVWKVVDLDNWLKGNAFW* back to topmRNA from alignment at P-littoralis_Contig61:584275..591008+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig61.106.2 ID=mRNA_P-littoralis_Contig61.106.2|Name=mRNA_P-littoralis_Contig61.106.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6734bp|location=Sequence derived from alignment at P-littoralis_Contig61:584275..591008+ (Pylaiella littoralis U1_48) CAGCAGGGCCGACGCTCGCGTGGAGCGCATGGGCCCGCGACGCCACCGTC
GTGGCTGCTCTCATCGAGGACAGCAGTGAGTCGCGTTCGCGCCCTGAGCA
GCAGCGGCAGCACGCCCGGAGATGGGGAGGCTGCACCAGCGGCGGCGGCG
GCGGCCGTCGGGGACTCCAAGCTCGGGGGTGATTTCCCCTGGCGGACCGC
GCCCGACCAGTTCGTGGAACCGATGGGGAGTGGCTCGTTTCTCGACGGTA
TCATGGAGGCGATCTTCCACGAGTTTTGCTTGAAAGGCGTGGATTTTACT
GTGAGTGGAACGTGTCTCGAGAAGAAGGTGGCAATGGAGTTTCAGGAAGG
GCTCTCGCAATATATACCTCGGCATGGCACCCGAACGGTTGTAATGTTTT
TATGAGAGGAAATCGCCAAAACCACCTTGCATGCGGCACTAGTTTTGATT
CGCTACTTTCTACCGCTGTTGCTGCTGCTGCCGCAACATGTTCCCAGCAC
ACTCATGTTGTTAGAGCGTAGATGCTCCCTTAGTTTTTGTTGCCACTACC
ACTTTTCCAAAGCTGTGATGTTGTCTCCCCTGGTGTCGGCGGTGGGCGCA
CTGTTGTTTGCACTGCACGTCCTGTCACTTGCACCTTCTTGTCTATACCC
TCGTGATAGGTTTTCGGATAAAATCACACTACTGCTGTAGGTGTCAAAAG
TTCACCGGAGTCGTTATTACCAAAGAAGCTCTTCTTCTCGTGGGCGTGTC
AATAATAGCTTGTTCACGCAGCTACCAACTGGCGTGTGCGCCTGTTGTCA
GTGGTCAAGGAACCGAGAAAGGGCGTGAGCACGACGGCAGTGTGCTTCCC
ATCATCGAGGCCTTTGCGTGTGTATCGGTACAGTGCTGTTTACCCATCGA
GATTTTTGACTTGACATTCAACATTTTTGCAACGCCCCACTCCTTTCAGG
TGCGGCAATGGAGCTACTCTCATGTCACACCAGTCACGAGCATCCCTCTC
CTAAAGTAGACGGTTAGAATAGTGCCTTCTAGACCTCTCTCATGAGCACG
GGCAGCACTACCACTTCCGCTGCCGATATTTTGTTTGGCCTCGCCCCCCC
GCCCCCCCTTCTGTCAGACGGGTGCAGAGGCGGCGTTCGTTACTACGGCG
GCAGCGTATTTCAGGATGAGCCCTTCCGAGGTGCGAGCACCCAAGCCAGT
AGAAGGAGAAAAGGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCTGAAA
CTGAAGCGGCGGCAGCAACTGTGGTGGGAGCCGAGGGAGCGTCATCGACG
GGCGATGCAGGGGAGAAGCCTTCAGCGGCAGCACCAGCACCAGCAGCGGA
CCCAGCAGGTGAGCAGAGCACATGTCCTCCGCTTTCATCGAAAATCCTTG
AGTCGTTCGCGCGCTGTAACGTCCCTTTTTACATTGTTCGTCACATGGTA
CATAAATGTAGCCATGGTGTGCTCGTCGCACAGCGCTCGTGCTCGTGCTC
TCGAACGCCCGGACGGACGGACGGACGGACGAAGAAACGAAGAAACGAAT
GCCCTTGCGGTGTGCAAACGTAGCCTCGTGTTTTCGGCGTGGTTGCGTCA
GGGCAAGCGCACCTGCGGACAAAGAGTACCGCCTCGTCGCCGAAAGCTTC
GCATCATATCAGACCCGTTCACTTACCTCCGTCGCAACATACTCCGTATG
GTACAAGATACATGCAATCTTCCCCAAAATACGTTGCTCCCCAATTGTTC
TACCTCGAATCGTTTAGCGGAGAAGCAGCCGTCGGCAGAGACCAGCGAGG
AAGAGGTGGAGCGGGTCCTAGCCGCCATCGACTCAGGACTAGTCGCGTTA
TCGGGAGACAAGGAGGGGGTACCGTTCTACCGCTTGCATAGCGTAGTCGC
TAAGGCAATAACAAGGAAAAAGTACATATTGGTGAGAGAAAAAATTCACC
CGTTGTGGTTTTTGTTTGGCAGGTAGAACAGCCGGCACTAGCGGTGGCTC
GGGGCTCTGCTATCTTTCGTTGCCTTGGAAGAGGGGTGTATGGTATGACG
TCGTTTGTCCCCTATGACGCACGCATACAGCAGTATTCTCTGACGAGAAT
CAAGGTTTTATAAAAGCTTGCCGGCGGTTGTTTTGTGTCTACCGGTGTCC
CTGACCTGGGTCTCTGTATTCTCGTTGATGCTGTTTTTGTTTTTTCCTCC
TGAGTGTCTTTCCCTCTTGTAGTGTCTTGCCTGCTCACGCAACGAGTGAC
GGAAGGAGAAAAGCGAATCTTGGCAAGGACGAAACGCTGGAGGGCTTGCC
GGCCCGATCTCTAGGAACAATTTCTGTCTTCGCTGAGTGCGTGTAGACAC
CGGTATTCCTCGGCCCTTAGTTCCACCGTCGTCCACCTCTTCCCAGAGAG
CTACGTACTGCTCGCGTGAACTGCCGTGCTCTTCGTTTCCTGCCGTGCCT
CTGCCGAGCGCCTCTGGATAAATTCAAACTGAACATCATTGAGTCGATCG
GAAGTTCCTAGCCCGCTTGGTCTTTTTCTGCGTTGTTCTCCTTTCTCTCT
TTTCTCTCTCCCCCCCTCTCTCCCTCCCTCCCTCCCTCCTGTCTTGTTGT
CTTGTTGTCTTTTCTCTTACCCCCCCCCCCCCTCCCCACGCCCCTTCTCC
GCTGACGGATGACGAACACGTCACCCCGTTACTAATCGTATTTTTTCGTT
TTTCGAACGAGGGGACCAGGGCGTGCGGCGAGGCGACGACTTGTCGAATC
GGTTCTCGGTGTCCATGTCGCCGTCGTTGGACATCGTGCTAGAGGAAAAC
AAGGCTTTCGCCCAGATCAAAAACACCTTGGCGGGGAACGCCACGATCAC
CTTCCAGGTGGACGTAGACGTGGACTGCGACGAAACGTTTTACGTCAAGG
ACAAGGAAAGCGGAGAGGTGCGCGTGCATGAATGCATTGATTTTTCCTTT
TCTGTTCTCTTGTGGGTGGTTGCTGCCTGTGCCCGTGTGGTTCTGTTGTC
TCTGATTAGCGTTCAATCGGCTTCCGTTGCGTGGAAGAGGCTCTTGAGCA
GCGATGCGTGTTAGGAAGGATCGAGCAGCGGGCACCTTGGCGGTGGGTGT
TTTTTTTTCTCATTTGTGTGCCCCCCGGTACCAAGTGGTCTTCGCTCCTG
GCTCCAGTCCTCTACTTGTTTATTGTAAAATGGAAGCCGCAAGTTTCTAG
ACTGCGCCGCAGGCAGTCCTGGGTGCTGTCTTGCGTGACTCTCTTCTCAC
ATATGCGAACTCGGGCTTTGCGGCGATTGCTTTCAGGACCTCTCAGTTGT
CGTGAAGCACCTGTCGGACCTTCTCCCCCCGCCACAGCTTTGTTCACCGC
ATTATGCGTGCGAGGCGCGAACGCTGTGTTTTTGTCACACCGTCGTGCCA
GCGCTTCGTGTTCGTCATTTTCCTGCCTCGTGTGTTGGCTGAGCGTTTTC
CATGTGTTGTTTCTAATCCCTTCTTCTTTTGGTCCAGCCCCATCTCTTTG
GGATTCACGTTTGCGCCCTTCTTCCAGCCATTCTACTGGCATGTTTTTCA
GTGCGTGGTTCCAACTCTATACATTCGTACTCCTCATTGTTCTGGCCTGG
TGAGCTGGTTTGCATTTTGTTATTGATGCTGTTCGAATCTCCTGTCGACA
GGTTATTCAGGGAAAGGAAGAAAGCGCTGGGCGCAGGCACCGCGTCCGGC
TAGAGAGCCACCATGTTCTTTCGGACCAAAGCATAGAGCAACCACATGTC
TGGAAGGTGAGGCAGTTAGGGACGTTCGCTTCTCTTGCTTTGCGATTTTC
ATGTCTCCGATGAATGCCGTGTGATACATGCGAAAAGTTAAGAGGGTCAT
TTTGATTTTCCAGACTTGGATGTTATGCAGCCAAAAAACGCTGTCGAAAA
ATACCCTTTCCTGGCTCAGCTTTTATGCCGCCAGTGGGTTAAGATCCGCT
GTTCCTATGCTGATGAAAATGTTGTTGGAGATGCCCGGGGTTTGGCTGTT
GGGCCGGTTTCAGAGACTGGCCACGTACAAGTAGCAACGAGAGGGCGGTA
TTATTGCGCTTGAGACCACTTTTTCTTTTCGCTCCTAGTTATCCGACGAA
CGAACCCTCAGCAATATGAGAGCCGCTCTCCATGAGCTGCGTGATGTAGT
TCTTCTAGTGCGGTGACCTTTTGAGCCCTCAGGTTGTCGGGTAAGGCTCG
CGAAAAATTGTTCATGTCACACTCGTGCGTAGAAAATAATAATAGACCTG
CGCGACGCCGCTGGCACTGGTTTGCTCTTTCGTTCACCTGTCTCGAACGG
ACGGAGCCACAGCAGTGTCGGAGGCATCTCCCGCGAGTTATTTCGTGTGG
TGATCGTTTGGGGTTAGGGCTACACCCGTACGTTCGCAGTGGAGTTTTTT
CCCCTGGTAACCACACGTGAAATAATAGAAGAGAGACCTTTTCGGTCGGT
GCTGCTCGATGATACAGCTGTCTCTCTATTTTTTTCAAACATGTCGGGAT
TGCCACGAGCAGATATTTTCGTGCAAGCCGACCGATGCCTTGCGGCCCCG
AACGATCACCACGCGAGAAGGGCTATGTACACACGCAGCTCAAGGCAGAT
GCCTTTGCCATTGTTGTGGCTTTTTCTATGCGAGAGTGAACGAAATGCAA
ACCGGTGACAACCCCAAATGAGTGTAAAAATCAACCGGTGGCTTTGTATG
CCCGTGTATATACTTCGTATGCTATTTATTCACTGCTGCTGCGGCTGCGG
TTGGTTGTTGATGCTGATTCACATATTACACCCTCCGGCACTCACATGGA
CAACAGCAGCAACGCCACCTCTGGTCTCCTGCTGCTGCTCTGCTTGCGTG
TGTTGGTTGCTTGTGGCTTGATGTGATTGGGTTGGTGTGCGTATGTGTGT
GTGGTGTTTATTCGAGACGCGCATCGAGAGGAGATCCGAGGACAACATTT
TCGATCGTATTTTTCGGAGCAGCCACCGCGCGGAAAAGCGTTATCGTTCC
CGACAGGATTCCATTTGAACTCTGATCGTAAACGTTGCGTCGGAAAATGT
TAATCGAAGAGAGACTTTTGCCGATAGCATGTCAGTTGTAATTTTGCCCA
TTATGAACAACGACATTTTTCTTCAGCATTTTCAACAGATGAGGACAGCC
TCACAAAAGCAGGATATAATCCAACATGACCTAACAACAAACATGAAAAG
TAGAATTTTTACGCGGTACGCTTTTCTCGGGGACATACGGGCATGGTTCA
TGTTGGCCGGACGGACTGGGCCGACCATTTGATACCGAAGAATCGGGTTC
GGCCGGCCCCACTTCTTGCGATGCCCTGATCCTTTTTTTTTCTGTTACCA
ACACGTGTCCCTGTTCGGCCTCCCATCTCAGGCAAGCCGTCCCTTCTGCT
CTGTAAGGTTAACTTTTTTCTTTCTGACTCGCGCAGGAACCTCTGGATAA
TCTTGCAGCACAGATTTGCGCACATTGAACATACAGCATGGGACCTTGAA
GCTGCCTGCTGTTGAGAATCTTAACGTTCGCGGGGGAGAAAAAAGTTGCA
GCGAAACGTACCAGGAAAAATAACAGAATAAACGCATGTTGAGGGGGGGA
AATCTCCGGTCGCGCTTTGTACGTTATAACGAAGGGTTTTCTGTTTCCTT
TGCTGCCACGATTAATTTCCTCGTTTGGCATGTCAGGTGGTCGACCTGGA
TAATTGGTTGAAAGGAAACGCCTTCTGGTGAAGACGAAGAAAACGAAGAA
GCTTCCCGAGTCGAGCAATCGCGCGCGCACGCACGTGCATGCCGCGTCCT
TCCTTGGACGTACCCCTTGTACGGCTTGATTTCTCAGATGGGGTACTACT
GCCGTAGACGCAAACGCAGTAAACTTCGATGTACATTTTATCTTTCATGA
TAGATGTACCCACGTTATTTTTTCGCTAGTTTTTTTCTCAGGTTTTGGAA
GTTATTTCGTTTCGACGAAAATATCAACGGTGCCGACTGAAGACGACTTG
CTGTTAATTTTCCGGCTCACTCGCTCTTTGCAGTACAGCACAGATGGTAG
TGGTACAGCAGTCGCTTTTGCGGGTACCGGCTCCCTCCGTCGTGATCACG
AACGGAACCACCGGGTATGCTGGGTAGGTCGAATCAAGCGCAAGATAGAA
ATCCAGCGTCTACTTTGGTGGTGCAGTCCCTGCTGTTGCTGCCGCTGCCG
CTGCCGCTGCTGCTGCGAATCTACTGCACTCTGTACCCTCAGCGGAATGA
TTCACGAGCCTCATGAGGGAAGCCACGTGAAAATTGAAAGAAGACCGGGT
TGGCTGAGTTCTGGTCGGCATCATTTTTACCTACTCCACTGTTAAGGAGA
TGAGGAAGCACTGCTGTTCCTACAGCTCATCTGTTTTAACAGGATGGGCG
TTACCGAGAGGCATTTTGTTCATTCCTGCGCGTGCCATCCGGCCGGCGGT
ATTTCTGTCTTTGCGTAGCTCATCGGTTGGTTAGAAAACGTGGCACTACG
TTTTCGCGACAACTACGGCAGGTGTGGTGACAGCACTGTAATCAGATTCC
AGCAGTGAATATACTCGGCCGTATGTATTGTATTTTCATCTCTGCACAAA
GGAATCAGTCCATGAGTCGAATGTGTTCGTCTCTCTTTCAGACGAGACGC
TAGAGCAGACTTCAGCAACGAACAGAGTTCTATCTACATGTCGTTCATCA
TCAATGTGAATTGAATGCTACGTTTGCAACTGGA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig61:584275..591008+ >mRNA_P-littoralis_Contig61.106.2 ID=mRNA_P-littoralis_Contig61.106.2|Name=mRNA_P-littoralis_Contig61.106.2|organism=Pylaiella littoralis U1_48|type=CDS|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig61:584275..591008+ (Pylaiella littoralis U1_48) ATGGGGAGTGGCTCGTTTCTCGACGGTATCATGGAGGCGATCTTCCACGA GTTTTGCTTGAAAGGCGTGGATTTTACTACGGGTGCAGAGGCGGCGTTCG TTACTACGGCGGCAGCGTATTTCAGGATGAGCCCTTCCGAGGTGCGAGCA CCCAAGCCAGTAGAAGGAGAAAAGGCAGCAGCAGCAGTAGCAGCAGCAGC AGCAGCTGAAACTGAAGCGGCGGCAGCAACTGTGGTGGGAGCCGAGGGAG CGTCATCGACGGGCGATGCAGGGGAGAAGCCTTCAGCGGCAGCACCAGCA CCAGCAGCGGACCCAGCAGCGGAGAAGCAGCCGTCGGCAGAGACCAGCGA GGAAGAGGTGGAGCGGGTCCTAGCCGCCATCGACTCAGGACTAGTCGCGT TATCGGGAGACAAGGAGGGGGTACCGTTCTACCGCTTGCATAGCGTAGTC GCTAAGGCAATAACAAGGAAAAAGTACATATTGGGCGTGCGGCGAGGCGA CGACTTGTCGAATCGGTTCTCGGTGTCCATGTCGCCGTCGTTGGACATCG TGCTAGAGGAAAACAAGGCTTTCGCCCAGATCAAAAACACCTTGGCGGGG AACGCCACGATCACCTTCCAGGTGGACGTAGACGTGGACTGCGACGAAAC GTTTTACGTCAAGGACAAGGAAAGCGGAGAGGTTATTCAGGGAAAGGAAG AAAGCGCTGGGCGCAGGCACCGCGTCCGGCTAGAGAGCCACCATGTTCTT TCGGACCAAAGCATAGAGCAACCACATGTCTGGAAGGTGGTCGACCTGGA TAATTGGTTGAAAGGAAACGCCTTCTGGTGA back to top
|