mRNA_P-littoralis_Contig61.70.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.70.1
Unique NamemRNA_P-littoralis_Contig61.70.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig61.70.1 vs. uniprot
Match: A0A6H5K1P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P9_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.580e-64
Identity = 314/642 (48.91%), Postives = 332/642 (51.71%), Query Frame = 3 
Query:   30 FPPGVGRSHMGGGPRPGFSPHGAPMPMNVSP------------RLGGHMPHGG-HSMPFPGGFRPGQPG-QNHNPLQLPRGGGPRGTA------PQGSHGYGASPAMGPTLPSQPPQGPGQQAEWAAARQXXXXXXXXXXXXXWRNTPGVPAA--GGPGP--GLRQHSHQQHH-----QHRGGPSAPPSGAPVPWGDSWGA--GGGGPRPNAPEVVDGPAASPRALAQXXXXXXXXXXXXXXXXXXXXXXXHQXXXXXXXXHRPEVTAAASTVSTLATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTPSLPSAVPGSSGDADDISLAMQNGELSAAARVFVPTNISPAKPPSKGVASGGSTPVGRSGAAGATPXXXXXXXXXGSSPALLRSSPTK------------------GAGGGAGGSLGLPLADGVFGPSWGGMGGVGGSANKGASSRADASEDGGGSSSSNLWGSLGIDVGGAGVPASGQAIWGSSSLLDSVGGXXXXXXX--------AGDGVSLLLAPSTGSAVQAPVDAASLPSFSSSSPLDLSSWDVVGGGGXXGVRGASAGALAGD--VGGLPSPLSGLSMDGSASKLVGGKVGDQPQRRG-----------FGSAASGLSSWG 1745
            FP G GR HMG  P P FSPHG P P                  L GHM H G   MPFP G+R G PG  NH                     PQ S                      QQAEWAAARQ               N P VPAA  GGPGP  GLRQH  Q        QH GG   PP+GAP PWGD W A  GGGGPRPNA E  + PA     LAQ XXXXXXXXXXXXXXXXXXXXXX  XXXXXXXX                  XXXXXXXXXXXXXXXXXXXX             +TPSL  + PGS GDADDISLA+QNGELSAAA+ FVP NISPAKP     ++GG TPV R GAA A               A+ R++ T                               PLAD  FG SWG MG                         SNLWGSLGIDVGGAGVP SGQAIWGSSSLLDSVGG   XXXX        AGDG+SLLL PS  S VQAP DA SLP FSSS PLDL+SW V       G RG  AGALAGD  VGGL S LSGLSMD SAS ++GGK G+QPQ              FGSA+S LSSWG
Sbjct: 1025 FPAGGGRGHMGPTPSPRFSPHG-PRPSXXXXXXXXXXXXXXPSHLVGHMLHRGPQPMPFPRGYRQGPPGGPNHXXXXXXXXXXXXXXXXXXXXXPQQSXXXXXXXXX--XXXXXXXXXXXQQAEWAAARQRAAAIASGWS----NNAPSVPAAAGGGPGPVPGLRQHPRQHQXXXXXXQHPGGTLDPPAGAPAPWGDPWSAANGGGGPRPNAQEGRNSPALPRGGLAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSQHAAPP----RTPSLTPSSPGSPGDADDISLAVQNGELSAAAQEFVP-NISPAKP---ATSTGGGTPVSRPGAAAARSAGVETPT------AVARAAQTPPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLADVAFGSSWGSMGXXXXXXXXXXXXXXXXXXX-XXXXXSNLWGSLGIDVGGAGVPPSGQAIWGSSSLLDSVGGDGGXXXXXXXXXXAIAGDGLSLLLGPSNVSTVQAPADATSLPPFSSSCPLDLASWGV-------GRRGG-AGALAGDEFVGGLASSLSGLSMDDSASGVLGGKAGEQPQXXXXXXXXXXXGGVFGSASS-LSSWG 1635
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1P9_9PHAE1.580e-6448.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:439055..442107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1950
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003990.1
Cds size1692
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791270.3674014-UTR-P-littoralis_Contig61:439054..4392561680791270.3674014-UTR-P-littoralis_Contig61:439054..439256Pylaiella littoralis U1_48UTRP-littoralis_Contig61 439055..439256 -
1680791270.4141188-UTR-P-littoralis_Contig61:442051..4421071680791270.4141188-UTR-P-littoralis_Contig61:442051..442107Pylaiella littoralis U1_48UTRP-littoralis_Contig61 442052..442107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791270.3838217-CDS-P-littoralis_Contig61:439256..4406901680791270.3838217-CDS-P-littoralis_Contig61:439256..440690Pylaiella littoralis U1_48CDSP-littoralis_Contig61 439257..440690 -
1680791270.3948312-CDS-P-littoralis_Contig61:441362..4415831680791270.3948312-CDS-P-littoralis_Contig61:441362..441583Pylaiella littoralis U1_48CDSP-littoralis_Contig61 441363..441583 -
1680791270.4043548-CDS-P-littoralis_Contig61:442014..4420511680791270.4043548-CDS-P-littoralis_Contig61:442014..442051Pylaiella littoralis U1_48CDSP-littoralis_Contig61 442015..442051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.70.1prot_P-littoralis_Contig61.70.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 439257..442051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.70.1

>prot_P-littoralis_Contig61.70.1 ID=prot_P-littoralis_Contig61.70.1|Name=mRNA_P-littoralis_Contig61.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=564bp
MGGGPRPGFSPHGAPMPMNVSPRLGGHMPHGGHSMPFPGGFRPGQPGQNH
NPLQLPRGGGPRGTAPQGSHGYGASPAMGPTLPSQPPQGPGQQAEWAAAR
QRAAAAAAAAGGGGWRNTPGVPAAGGPGPGLRQHSHQQHHQHRGGPSAPP
SGAPVPWGDSWGAGGGGPRPNAPEVVDGPAASPRALAQQQQQQANNMQQQ
QRRRQPQQQQQHQQQQQQHQQHRPEVTAAASTVSTLATAVAPTRAAAAPA
PAAPAPAPAQQATTMVTTTTPRQTPSLPSAVPGSSGDADDISLAMQNGEL
SAAARVFVPTNISPAKPPSKGVASGGSTPVGRSGAAGATPPRPPPAAALG
SSPALLRSSPTKGAGGGAGGSLGLPLADGVFGPSWGGMGGVGGSANKGAS
SRADASEDGGGSSSSNLWGSLGIDVGGAGVPASGQAIWGSSSLLDSVGGG
GGGGSSAGDGVSLLLAPSTGSAVQAPVDAASLPSFSSSSPLDLSSWDVVG
GGGGGGVRGASAGALAGDVGGLPSPLSGLSMDGSASKLVGGKVGDQPQRR
GFGSAASGLSSWG*
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mRNA from alignment at P-littoralis_Contig61:439055..442107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.70.1 ID=mRNA_P-littoralis_Contig61.70.1|Name=mRNA_P-littoralis_Contig61.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3053bp|location=Sequence derived from alignment at P-littoralis_Contig61:439055..442107- (Pylaiella littoralis U1_48)
TCGGTGCGGCCGCAGCAAGGGCGGGGCCATTCCCGCCGGGGGTCGGACGC
AGCCATATGGGCGGGGGGCCACGGCCAGGGTTTTCACCTCATGGTGAGCA
ATAATCTGGTCACCACACATGGTAGTAGGGTGCCTGCCTCATTGAGGGTG
CCTGCCTCATTGAACGTTTTTGATTGCATTAAGGACGGGTCCTCCCTTGA
CGAACGAATTCCAAAGCTTCAACTTTTGTTGTTGCTGTTGCTGTTGCTGT
TGTTGTTGTTGTTGTTAATATTGTTGTCGTTGACTCTCGCGTTATGATAG
CTCATCGCCAAAATGTAGTCCGCGGTCGCAAACTGATACAGCAGTATTGT
GCTGCCAGAGAGGTAAGAGAAACGAAAAGAAAAGTGTAGGCACGGGGGGA
AAGCAATCCACGCTAGAGTCCCCCCCCCCCTCTGTAGAAATGATAAGTTG
TCTGACACGTTTCATTTGCCCCCCACACCCACCCCCACGTCAAACCGCAT
GCCCGCACCCTGCGCCGCCATCAGGAGCACCGATGCCCATGAATGTTTCT
CCTCGCCTCGGCGGTCACATGCCTCATGGGGGCCATTCCATGCCCTTCCC
GGGGGGGTTCAGGCCTGGGCAGCCCGGGCAGAACCACAACCCTCTCCAGC
TTCCCCGTGGCGGTGGGCCGCGCGGCACGGCGCCGCAGGGATCGCACGGG
TATGGGGCTTCACCCGCGATGGGGCCGACGTTGCCTTCTCAGCCGGTAAG
CATGTCTGAGGGTGGCGGCTGGCTGTGCGCCACACGTTTTTGCTGCATAG
CGGTAGGTAGCATCGACCGCGGCTGGACCGAAGGAGACCAGTTGTCGGCG
GGGAATATTCTCACCCCCCTGTGTGAGTGGGGGGTAGATGGGGTTGGTTG
TGTTGTGTTGCTGCACTCGGGGCGGGGACCGACCACACCCAACATCAGTT
CAGAGCATGGCCTGTGCGAGTAGCGCAGCTTCGTGTACCCTAAGTCTTGT
TCAACGCCTGGAGAGGAGTGGGGATGGACCCTCGTGGTGGTGCTTTTTCG
CAATGTTTGATGCGTGGCGTGTCGTCGCCCACCTTGCGTGAGCGCGTCCA
TTATACTGGGAACGCACACAACGAACATTTATCGCTTAGCCGCCTATTCT
GTGCGCTTTCTGTCCCTCTACCACGTGGTCGTGGTTGTCCCGGTGCCACA
CAACTGCACGTAGCCTGAAAAGGCTGTACCGCTGTTGCTGTTGCCTTGTG
GGCTGTTTTCTGGGCTATTTCGCGGGGCCGCCTTTACCAGATTCCCCTCC
ACCAGCCTGTGAATTCCAAGAACGATACGTACTCAAATCCTCTGCAGTCG
AACCTCAAGCCGCAATTCTGCTCCTGCTCTCTCTTTGCCGCCCCGTATCA
TATTATCGACGTAACAGCCCCAGGGTCCTGGTCAGCAAGCGGAGTGGGCG
GCGGCGCGCCAACGCGCCGCGGCGGCAGCAGCAGCTGCCGGGGGCGGCGG
CTGGAGAAATACCCCGGGCGTACCCGCGGCCGGCGGCCCGGGTCCCGGGC
TGCGTCAACACTCACATCAGCAACATCATCAACATCGCGGTGGCCCATCA
GCGCCGCCATCGGGAGCCCCGGTGCCGTGGGGAGATTCGTGGGGAGCCGG
CGGTGGTGGCCCTCGCCCGAACGCACCCGAGGTCGTGGATGGTCCGGCGG
CATCACCTCGTGCGCTTGCTCAGCAGCAGCAGCAGCAGGCGAACAACATG
CAACAGCAGCAGAGAAGGCGGCAGCCGCAACAGCAACAACAGCACCAACA
GCAACAGCAACAGCATCAGCAGCACCGTCCAGAAGTGACGGCAGCAGCAT
CCACAGTTTCCACCCTTGCTACTGCAGTGGCACCGACACGGGCAGCGGCA
GCACCAGCACCAGCAGCACCGGCACCAGCACCAGCCCAGCAGGCAACAAC
GATGGTGACGACGACAACACCCCGGCAAACGCCCTCTTTGCCATCCGCCG
TTCCGGGCTCCTCGGGGGACGCGGACGACATATCTCTCGCGATGCAAAAC
GGCGAGCTCTCGGCGGCGGCGCGCGTGTTCGTCCCGACGAATATTTCCCC
GGCCAAGCCGCCCTCGAAAGGCGTCGCGAGCGGTGGCAGTACTCCGGTAG
GCCGTTCCGGAGCTGCTGGAGCAACGCCCCCCCGACCTCCACCAGCCGCC
GCATTAGGGAGTAGTCCTGCGTTATTAAGGTCGTCCCCGACAAAGGGCGC
CGGGGGTGGGGCAGGAGGAAGCCTAGGACTCCCGCTCGCTGACGGCGTTT
TCGGACCATCGTGGGGAGGGATGGGCGGGGTTGGCGGGAGCGCCAACAAA
GGGGCCTCCTCTAGAGCAGATGCTTCCGAAGACGGAGGCGGCAGCAGTAG
CAGCAACCTTTGGGGCTCGCTTGGGATCGACGTGGGGGGGGCAGGGGTTC
CTGCCAGCGGGCAAGCGATCTGGGGTAGCAGCTCTTTGTTGGATTCCGTG
GGGGGCGGCGGAGGTGGAGGTTCGAGCGCGGGAGACGGGGTGTCCCTTCT
CTTGGCGCCCTCCACTGGATCTGCGGTGCAGGCACCGGTTGATGCCGCCT
CGTTGCCGTCTTTTTCTTCGTCGTCTCCGCTGGACCTTTCTTCGTGGGAC
GTAGTAGGCGGTGGTGGTGGCGGCGGCGTGCGTGGGGCAAGCGCTGGCGC
CTTAGCTGGAGACGTCGGCGGGCTCCCCTCCCCACTTTCTGGGCTGTCGA
TGGACGGTTCCGCGAGTAAGCTTGTCGGAGGGAAGGTCGGCGATCAACCA
CAGCGGAGAGGGTTTGGTTCCGCCGCGAGCGGGCTTAGCAGCTGGGGTTG
AAAGTGTAGTACTTCTCGGTGCGCCAAGAAGGAGGATTCGAGTCGATCGT
TGGCGCGATGCGAACGACAGGCGATTCAGATGCACTGACTTACGCGTTGT
ATGACGCAAACGGGAATTTTAAATGGTTGTTGTTTCCTTGACTGCTGTCC
GTTGGGGAGAGGAGGTTTTTTCGCAGTGGACGGCCCAGTTCGTGGCACGT
GGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:439055..442107-

>mRNA_P-littoralis_Contig61.70.1 ID=mRNA_P-littoralis_Contig61.70.1|Name=mRNA_P-littoralis_Contig61.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1692bp|location=Sequence derived from alignment at P-littoralis_Contig61:439055..442107- (Pylaiella littoralis U1_48)
ATGGGCGGGGGGCCACGGCCAGGGTTTTCACCTCATGGAGCACCGATGCC
CATGAATGTTTCTCCTCGCCTCGGCGGTCACATGCCTCATGGGGGCCATT
CCATGCCCTTCCCGGGGGGGTTCAGGCCTGGGCAGCCCGGGCAGAACCAC
AACCCTCTCCAGCTTCCCCGTGGCGGTGGGCCGCGCGGCACGGCGCCGCA
GGGATCGCACGGGTATGGGGCTTCACCCGCGATGGGGCCGACGTTGCCTT
CTCAGCCGCCCCAGGGTCCTGGTCAGCAAGCGGAGTGGGCGGCGGCGCGC
CAACGCGCCGCGGCGGCAGCAGCAGCTGCCGGGGGCGGCGGCTGGAGAAA
TACCCCGGGCGTACCCGCGGCCGGCGGCCCGGGTCCCGGGCTGCGTCAAC
ACTCACATCAGCAACATCATCAACATCGCGGTGGCCCATCAGCGCCGCCA
TCGGGAGCCCCGGTGCCGTGGGGAGATTCGTGGGGAGCCGGCGGTGGTGG
CCCTCGCCCGAACGCACCCGAGGTCGTGGATGGTCCGGCGGCATCACCTC
GTGCGCTTGCTCAGCAGCAGCAGCAGCAGGCGAACAACATGCAACAGCAG
CAGAGAAGGCGGCAGCCGCAACAGCAACAACAGCACCAACAGCAACAGCA
ACAGCATCAGCAGCACCGTCCAGAAGTGACGGCAGCAGCATCCACAGTTT
CCACCCTTGCTACTGCAGTGGCACCGACACGGGCAGCGGCAGCACCAGCA
CCAGCAGCACCGGCACCAGCACCAGCCCAGCAGGCAACAACGATGGTGAC
GACGACAACACCCCGGCAAACGCCCTCTTTGCCATCCGCCGTTCCGGGCT
CCTCGGGGGACGCGGACGACATATCTCTCGCGATGCAAAACGGCGAGCTC
TCGGCGGCGGCGCGCGTGTTCGTCCCGACGAATATTTCCCCGGCCAAGCC
GCCCTCGAAAGGCGTCGCGAGCGGTGGCAGTACTCCGGTAGGCCGTTCCG
GAGCTGCTGGAGCAACGCCCCCCCGACCTCCACCAGCCGCCGCATTAGGG
AGTAGTCCTGCGTTATTAAGGTCGTCCCCGACAAAGGGCGCCGGGGGTGG
GGCAGGAGGAAGCCTAGGACTCCCGCTCGCTGACGGCGTTTTCGGACCAT
CGTGGGGAGGGATGGGCGGGGTTGGCGGGAGCGCCAACAAAGGGGCCTCC
TCTAGAGCAGATGCTTCCGAAGACGGAGGCGGCAGCAGTAGCAGCAACCT
TTGGGGCTCGCTTGGGATCGACGTGGGGGGGGCAGGGGTTCCTGCCAGCG
GGCAAGCGATCTGGGGTAGCAGCTCTTTGTTGGATTCCGTGGGGGGCGGC
GGAGGTGGAGGTTCGAGCGCGGGAGACGGGGTGTCCCTTCTCTTGGCGCC
CTCCACTGGATCTGCGGTGCAGGCACCGGTTGATGCCGCCTCGTTGCCGT
CTTTTTCTTCGTCGTCTCCGCTGGACCTTTCTTCGTGGGACGTAGTAGGC
GGTGGTGGTGGCGGCGGCGTGCGTGGGGCAAGCGCTGGCGCCTTAGCTGG
AGACGTCGGCGGGCTCCCCTCCCCACTTTCTGGGCTGTCGATGGACGGTT
CCGCGAGTAAGCTTGTCGGAGGGAAGGTCGGCGATCAACCACAGCGGAGA
GGGTTTGGTTCCGCCGCGAGCGGGCTTAGCAGCTGGGGTTGA
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