mRNA_P-littoralis_Contig609.26.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig609.26.1 vs. uniprot
Match: D8LGE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE3_ECTSI) HSP 1 Score: 464 bits (1194), Expect = 2.460e-159 Identity = 275/403 (68.24%), Postives = 315/403 (78.16%), Query Frame = 1
Query: 1 MSGPLENMSALAAANSEVDVQQALQSPELWRRLELFRLALKSSSSSREGKNPDK-ERKLALGLLNELEPRLLFVAVDFSHGPAGDEIKRRAVEVSLLAVFGSSVGPDLLRENNAELVPFFLAGLCHPTPSVKILTAKALIALGLGXXXXXXXXXQPEE--DGGERADRCRALLQAPLLPALVAALGDGDTGAAQATADTLVSLCEEADRLQTAAVAXXXXXXXXXXDSETTTCRRAVMGALAAQLGEVVAGLTDRQASTPKFRFADTAARLMSTSDSAFNAAVDAGALSLVTNLTEDASDVLLQLNALELLEQVASTASGARHLIAKGHLDALLVSAGGGAGENSEAPDPLLGASALRTLAKVLAKTEGVGLDVWRERSPSFVEGFLHACTVHIEARDEASKV 1200
MSGPLENM + AN E +++Q +QS ELWRRL+L+RLAL SS S + ERKLALGLL ++EPRLLF+AVDFS+G AGDE+KRRAVE +LL+VFGS+VGP++ ++N ELV FFLAGLCHP V+ LTA A+ AL XXXXXXXXX +G ERA+RCR LLQ PLLPALVAALGDGDTGA+Q ADTLV+LCEEAD AAV T CRRAVMGALA+Q+GEVVAGLT RQA+TPK RFAD A RLMS SDSAF AAVDAGALSLVT+LTEDASDVLLQLNAL+LL+QVASTA GA HL+A GHLD LLVSAGGG G++ EAPDPLLGASALRTLAKVLA+ GLD W++RSPS + GFL ACTVHIE +DEA KV
Sbjct: 1 MSGPLENMKYMKEANCEAEMKQRMQSQELWRRLDLYRLALLSSRSRETTADGGATERKLALGLLKDVEPRLLFLAVDFSYGQAGDEVKRRAVETALLSVFGSTVGPEIYQQNGTELVAFFLAGLCHPAAGVRTLTATAMGALXXXXXXXXXXXXXXXXXXEGRERAERCRTLLQPPLLPALVAALGDGDTGASQQVADTLVALCEEADGR--AAVTPTTG-------GRATGCRRAVMGALASQIGEVVAGLTARQAATPKLRFADIATRLMSASDSAFAAAVDAGALSLVTDLTEDASDVLLQLNALDLLDQVASTAGGALHLVANGHLDRLLVSAGGGEGDSPEAPDPLLGASALRTLAKVLARAADAGLDAWQQRSPSSLGGFLRACTVHIEGQDEAGKV 394
BLAST of mRNA_P-littoralis_Contig609.26.1 vs. uniprot
Match: A0A6H5KYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX7_9PHAE) HSP 1 Score: 324 bits (830), Expect = 1.250e-102 Identity = 203/401 (50.62%), Postives = 245/401 (61.10%), Query Frame = 1
Query: 1 MSGPLENMSALAAANSEVDVQQALQSPELWRRLELFRLALKSSSSSREGKNPDK-ERKLALGLLNELEPRLLFVAVDFSHGPAGDEIKRRAVEVSLLAVFGSSVGPDLLRENNAELVPFFLAGLCHPTPSVKILTAKALIALGLGXXXXXXXXXQPEEDGGERADRCRALLQAPLLPALVAALGDGDTGAAQATADTLVSLCEEADRLQTAAVAXXXXXXXXXXDSETTTCRRAVMGALAAQLGEVVAGLTDRQASTPKFRFADTAARLMSTSDSAFNAAVDAGALSLVTNLTEDASDVLLQLNALELLEQVASTASGARHLIAKGHLDALLVSAGGGAGENSEAPDPLLGASALRTLAKVLAKTEGVGLDVWRERSPSFVEGFLHACTVHIEARDEASKV 1200
MSGPLENM+++ AN E +++Q +QS ELWRRL+L+RLAL SS S + ERKLALGLL ++EPRLLF+AVDFS+G GDE+KRRAVE +LL+VFGS+VGP++ + Q ADTLV+LCEEAD A T CRRAVMGALA+Q+GEV+AGLT RQA+TPK RFAD A RLMS SDSAF AAVD+GAL+LVT+LTEDASDVLLQLNAL+LL++VASTA GARHL+A GHLD LLV+AGGG G++ +APDPLLGASALRTLAK W++RSPS + GFL ACTVHIE +DE K+
Sbjct: 1 MSGPLENMTSMKEANCETEIKQRMQSQELWRRLDLYRLALLSSRSRETTADGGATERKLALGLLKDVEPRLLFLAVDFSYGQTGDEVKRRAVETALLSVFGSTVGPEMYQ---------------------------------------------------------------------------------QQVADTLVALCEEADGRAAVTPATGGV---------ATGCRRAVMGALASQIGEVIAGLTARQAATPKLRFADIATRLMSASDSAFAAAVDSGALALVTDLTEDASDVLLQLNALDLLDRVASTAGGARHLVANGHLDKLLVAAGGGEGDSPDAPDPLLGASALRTLAKA-----------WKQRSPSSLGGFLRACTVHIEGQDEGGKL 300
BLAST of mRNA_P-littoralis_Contig609.26.1 vs. uniprot
Match: A0A7S2R6Q6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6Q6_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.070e-10 Identity = 95/336 (28.27%), Postives = 139/336 (41.37%), Query Frame = 1
Query: 202 PRLLFVAVDFSHGPAGDEIKRRAVEVSLLAVFGSSVGPDLLRENNAELVPFFLAGLCHPTPSVKILTAKALIALGLGXXXXXXXXXQPEEDGGERADRCRALLQAPLLPALVAALGDGDTGAAQATADTLVSLCEEADRLQTAAVAXXXXXXXXXXDSETTTCRRAVMGALAAQLGEVVAGLTDRQASTPKFRFADTAARLMSTSDSAFNAAVDAGALSLVTNLTEDASDVLLQLNALELLEQVASTASGARHLIAKGHLDALLVSAGGGAGENSE-APDPLLGASALRTLAKVL---AKTEGVGLD-VWRERSPSFVEGFLHACTVHIEARDEAS 1194
PRL D G AG E RR ++V L + G D R + E PF +AG HP S++ + L L + + E L+ ALV+ + D D A ++ L L D + + A+A VA D A T R AD L TSD F AA G L ++ LT+ SD+L QLN L+LLE+ + A + + G L+ +A G A + + +PDPLLG +ALR L+ +L + + G LD ++ P+ + FL A T ++ DEA+
Sbjct: 55 PRLFAELADV--GAAGQEPVRRVLDV-LAFLLAPPHGTD--RALSPETAPFLIAGTQHPASSIRQASVALLRRLAVDDVSSSSALAKQET----------------LVQALVSRVIDEDIQVATRASEALTGLATHG----------------MAQDMDAALMLLHTIAAVA------VAPPVDVNA-TLTLRCADLLVTLALTSDQVFEAAASRGDLDVLVALTKS-SDILAQLNVLDLLERCCTRACHVKFMFGSGIASWLIFAATGEASDGARGSPDPLLGGNALRVLSTILGSLSSSAGKDLDAMFSSADPALIRRFLRAVTALGDSPDEAN 345
BLAST of mRNA_P-littoralis_Contig609.26.1 vs. uniprot
Match: A0A2K1L7Z7_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L7Z7_PHYPA) HSP 1 Score: 56.2 bits (134), Expect = 6.600e-5 Identity = 66/234 (28.21%), Postives = 104/234 (44.44%), Query Frame = 1
Query: 268 AVEVSLLAVFGSSVGPDLLRENNAELVPFFLAGLCHPTPSVKILTAKALIALGLGXXXXXXXXXQPEEDGGERADRCRALLQAPLLPALVAALGDGDTGAAQATADTLVSLCEEADRLQTAAVAXXXXXXXXXXDSETTTCRRAVMGALAAQLGEVVAGLTDRQASTPKFRFADTAARLMSTSDSAFNAAVDAGALSLVTNLTEDASDVLLQLNALELLEQVASTASGARHLIA 969
+V +SL +F ++ G LL + + + GL + V+ LT A+ L G E DGG RA+ +A L L+ A+GDGD A+A AD L L L+ A GA A L + + + ++T + R AA + S+ A A D+G +++ +++ D+L QLNALELL +A+T+ GA+ L+A
Sbjct: 63 SVALSLERIFQTAYGKKLL----PQTLSYAGVGLKAESSLVRKLTCSAIGDLLEGG----------ETDGGAAV---RAIAEAHLAAPLLLAIGDGDAHVAKAAADALGKLARNPGGLELIFTAK---------------------GAGAGLLKD----MASQSSATVRIRALSMAASIFGISEEAAAAVQDSGIFTVLAAELDNSDDMLAQLNALELLCDLAATSHGAKFLLA 254 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig609.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig609.26.1 >prot_P-littoralis_Contig609.26.1 ID=prot_P-littoralis_Contig609.26.1|Name=mRNA_P-littoralis_Contig609.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=400bp MSGPLENMSALAAANSEVDVQQALQSPELWRRLELFRLALKSSSSSREGKback to top mRNA from alignment at P-littoralis_Contig609:55709..59441+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig609.26.1 ID=mRNA_P-littoralis_Contig609.26.1|Name=mRNA_P-littoralis_Contig609.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3733bp|location=Sequence derived from alignment at P-littoralis_Contig609:55709..59441+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig609:55709..59441+ >mRNA_P-littoralis_Contig609.26.1 ID=mRNA_P-littoralis_Contig609.26.1|Name=mRNA_P-littoralis_Contig609.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1200bp|location=Sequence derived from alignment at P-littoralis_Contig609:55709..59441+ (Pylaiella littoralis U1_48)back to top |