mRNA_P-littoralis_Contig609.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig609.44.1
Unique NamemRNA_P-littoralis_Contig609.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5JTI5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.150e-18
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 3
Query:   84 RSGEKVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            RSG K+  P RG+V+TW KE WE I+  T+ +CFK+CGLTL LDG EDHAWC   FG
Sbjct:  108 RSG-KLKPPERGVVSTWCKEAWESINPETVKTCFKICGLTLALDGGEDHAWCQHNFG 163          
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.690e-18
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   84 RSGEKVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            RSG K+  P RG+V+TW KE WE I+  T+ SCFK+CGLTL LDGSEDHAWC   FG
Sbjct:  205 RSG-KLKPPERGVVSTWCKEAWESITPETVKSCFKICGLTLALDGSEDHAWCDHDFG 260          
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.500e-18
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   84 RSGEKVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            RSG K+  P RG+V+TW KE WE I+  T+ +CFK+CGLTL LDGSEDHAWC   FG
Sbjct:  167 RSG-KLKPPERGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFG 222          
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5K0T0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.380e-18
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 3
Query:   96 KVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            K+  P RG+V+TW KE WE I+ +T+ +CFK+CGLTL LDG EDHAWC   FG
Sbjct:   67 KLKPPERGVVSTWCKEAWESITPKTVKTCFKICGLTLALDGREDHAWCEHNFG 119          
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.210e-18
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   84 RSGEKVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            RSG K+  P RG+V+TW K+ WE I+  T+ +CFK+CGLTL LDGSEDHAWC   FG
Sbjct:  108 RSG-KLKPPERGVVSTWCKKAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFG 163          
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5JN68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN68_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.460e-17
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   84 RSGEKVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            RSG K+  P RG+V+TW KE WE I+  T+ +CFK+CGLTL LDGSEDHAWC   FG
Sbjct:  498 RSG-KLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFG 553          
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5KRI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.610e-17
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   84 RSGEKVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            RSG K+  P RG+V+TW KE WE ++  T+ +CFK+CGLTL LDG+++HAWC   FG
Sbjct:   26 RSG-KLKPPERGVVSTWCKEAWESVTSETVKTCFKICGLTLALDGNKNHAWCKHNFG 81          
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.260e-17
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 3
Query:   84 RSGEKVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            RSG K+  P RG+V+TW KE WE I+  T+ +CFK+CGLTL LDGSEDHAWC    G
Sbjct:  205 RSG-KLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNVG 260          
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.970e-17
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 3
Query:   84 RSGEKVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            RSG K+  P RG+V+TW K  WE I+  T+ +CFK+CGLTL LDGSEDHAWC   FG
Sbjct:  257 RSG-KLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFG 312          
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Match: A0A6H5JCV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.250e-16
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 3
Query:   84 RSGEKVSAPSRGLVATWVKEVWEGISERTIPSCFKVCGLTLNLDGSEDHAWCTSTFG 254
            RSG KV  P R +V+TW KE WE I+  T+ +CFK+CGLTL LDGSEDHAWC   FG
Sbjct:  404 RSG-KVKPPEREVVSTWCKESWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFG 459          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig609.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTI5_9PHAE2.150e-1861.40DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQK9_9PHAE3.690e-1864.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8R4_9PHAE6.500e-1863.16DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K0T0_9PHAE7.380e-1860.38DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JBJ7_9PHAE8.210e-1861.40DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JN68_9PHAE1.460e-1763.16DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRI4_9PHAE2.610e-1756.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT06_9PHAE3.260e-1761.40DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE7.970e-1761.40DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JCV1_9PHAE1.250e-1663.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig609contigP-littoralis_Contig609:130552..135053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size260
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.5605106-CDS-P-littoralis_Contig609:130551..1306331680791266.5605106-CDS-P-littoralis_Contig609:130551..130633Pylaiella littoralis U1_48CDSP-littoralis_Contig609 130552..130633 +
1680791266.575876-CDS-P-littoralis_Contig609:134876..1349321680791266.575876-CDS-P-littoralis_Contig609:134876..134932Pylaiella littoralis U1_48CDSP-littoralis_Contig609 134877..134932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.5882044-UTR-P-littoralis_Contig609:134932..1350531680791266.5882044-UTR-P-littoralis_Contig609:134932..135053Pylaiella littoralis U1_48UTRP-littoralis_Contig609 134933..135053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig609.44.1prot_P-littoralis_Contig609.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig609 130552..134932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig609.44.1

>prot_P-littoralis_Contig609.44.1 ID=prot_P-littoralis_Contig609.44.1|Name=mRNA_P-littoralis_Contig609.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=46bp
DRGRLNSRLSIFAILAGWRLIIHEVSSGARGRRSPRRAGGWSRRG*
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mRNA from alignment at P-littoralis_Contig609:130552..135053+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig609.44.1 ID=mRNA_P-littoralis_Contig609.44.1|Name=mRNA_P-littoralis_Contig609.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4502bp|location=Sequence derived from alignment at P-littoralis_Contig609:130552..135053+ (Pylaiella littoralis U1_48)
GATAGGGGACGTTTGAACTCGAGACTATCAATCTTTGCTATCCTGGCTGG CTGGAGACTAATAATCCACGAGGTATCATCAGGTGGGCGTTATGGTCTCC GTGTTTCCTTCCCGACATGGCAGCACCAGAGCAGTGGCACAGGCCTTTTG GTTGAGCTTGAAAGAGTACAGCGAGGGCAGGGGGTACCCCCAGTTGGTGC TTGGACATGACGTGGAACCACCAGCGCAGTTCCCCCTTCGCTACTGCCAG ACTGCACGCCAGTGCGGCTTCCCATTTGAGTTTCATACTTGCCTGCTGCC TTCCTACAAGTACCTGTCCCTTACTTGCCGAACCAGTCTGCCGAACTGCC GAACTAGTCACGAGCTACATCTGTAAAATGTCATCGAAACAAGTGTTCTG ATTGATGTTGAATACGTACTGTAGCGTGTTGTGTTGTCATCCCTTTAATT GGTACTTCGAAGTATTTGCAGAATATTTGTATTTTGCATCTTGTTCCTGC AAAATAGAGGGCCGCTCACACCAGCAAGGTGAGAAGCAGTAGGGTTGCGC CCCATTGGGCTTCGCCGGTTACCCACGGGAACATACGGTATGTTCATCCG GGTACAGTAGTACCGTAAACTACGGAATTAACCCCCCCCCCTAGGGTTTC CCCCCCCCCCCATCACCTTTTCAGCCTGCCACCATGTTTTCTTTGATTTC CCCCCGGGGTAGATCGTTTTCGACAAAAAAACTAAAAGCTCCTCCGGGGT ACGTCAATCTCCCCCCAAGGTACAATTTTTTTCACGACTTCCCCCCGGGG GGGATGTATTTGCGCTTGTCCTTGAGTCGTTTTTTTGAATGGCGAAGGAC AAAAGCATGACAGGGGTACAGAAAATTAATCGTCACCTCTGCGCTTCGAG CGAGATACCAGGTATGTGTTGTACCGCGGCCAATTGGCATTCCAGGCTGT TTCCTAGGGTACCTACGCGCTTGGTTTTTTATTGTGTTCTTGTAATTGTT TTTCCCTGGAGTCACGGTAAAACGCATCAGCACAGAATGCCGACAGACCT TGCCAAACAAGGGTGAAAGAGACTTCGTCTTCATTTTTAGATCTCAAAAC ACAAGGTAGAACCGCACCACGAAAACAAGTACTTTCCTGCGAACGAACAA ACTACAGACAAACAAACTACGAATGAACTTTTGTGCATGAGCTATAGCGA CACATCTCCTGCGATAGACCAAAACAACCCTTCCCTCTGCCACACACCCT CGGCACGCTTGCCCCCACCTAGCCTCCATCTACCCCAAACTACAGCTCAT CATCCTCTGAACCCTCTGATTCCTCGTCCGCCAAGTCAATGACGTCTTCA GTGCCATCCTCCTCGTGGCCCTCCTCGTCCGAGTCGTCCTGGTGCGTTAG AGAGGCTGCCAGCGCTGCCGCCGCCTCCGCCACCGTGTCCTTGACGCCGT CTCCGGTGGGGATGGCCGGTAGCTGCAGCGGTTCGAGGTCGATGCCGTGC GCTTGCTCCCACTCCTCGCGCTGCTCGCCAAGAACCTCGCGGTAGTTGGC GCCAAACGTGGAGGTGCACCACGCGTGATCCTCGCTGCCGTCGAGGTTGA GGGTGAGACCGCAGACCTTGAAGCACGAGGGAATGGTCCGCTCCGAGATG CCTTCCCACACCTCCTTCACCCACGTCGCGACCAGCCCCCTGCTCGGCGC GGAGACCTTCTCCCCCGAGCGCCCGAAGTTGTCCCGGATCCAGATGGTGT ACCTGGCCCGAAAGCCTCGCTTGAACTCCTTGTTGATGTTCCGGTCGAGC GGCTGGCACACCGGGGTCAGCCCTCCACCAAGCATCACCACCAGCGTGTT CGCCAGATCCTTGAGCTTCTGCTGGAACTTCTCTTCCCGGTGGCACCTGA AGTCGTCGAGCACGAGAACGCTGGGACGCTGATCCCTGAGGGTATACCCT GGGCGGCGCATGGAGTCCTGAGTGACCCATTCGTCGGACTGAACGCCGTC GCACCACGACGACTCCTGCACCCCGAGGCTGATGCCGCCCGCCGGGTAGT CGAAGCTCGTCCGCTTCTCTGGGAGGTGCTCATACGAGATGCTGTTCTTG CCAGGCTTCTTGGGCGCGCCCGACTTCTTGGTACCCCCGACGAAAGGGCT CCCCTTGTAGATGATGCGCGGCCGCACCTTCTGTCCATCACCCGGACAGT TAGCACCACGGTGTACCGCAGCTTCTCCTGGCCTGGGTGCGGAAATCGGT GTGTATCAGAAGAACATACTCCGCGTGAATAACAAAACAACTTAGGGAAA TAACAACAATAATACCATTTGATTTATATTGGCTGCAAAACATTATTGCC TGCCACTACCGTAGGTAAACTACCGTATTTACCGAGGTAAACGATAACAT AGGTAATAAAATGAGTTCCCTGCTTTTCTTTATAAATTTAATCAATAAAA AAACACACCTTCTCCTGGAGTACAAAACTTACCAGGTACCTGCCAACAGC GAACAGGAATACAGCGTAATATATACATACAACTAAATGAATCATTAAAT CGCTGATAAATACAACAAACGTGAAGTGGGGCGGTGACAGCAGTACCTTG CAGGCAAAAGAAGCATGTGCACGTGACGGCAGAAGCAATGCGAAATATTC AAAAATATTATATTTTCCCGTATTTCCGCTGTCCGCAATTTTGTAATTTC CCGCTTTTGTTGCGCGTGCATAAAATCTCCGCACCGTGTTGGGTTGGAAC TAATTTAAACAATGCACTGTACCATCATACCGCCTCACCTCCCGTCGTGA TGCAAGCGCTCTTCGCACCAGTCTTCTCCAGCGTGGTTTCCGACGGCATC TCGGCCTGGATAGGTGTCTGGTTCATGTTGTACAGCAGGGCGAAGATCTT GGCCTGAACAGCCAGGAGTTCCTCCGCGGTCGCCTTGGTGTCCATCTCGA TCTCCATGGTCCCTCCGACCTTCGCTGCCTGGGCTGCCCTCTCCAAGATG ACGGCGTCCTGCGCGTGCTCACGCAGGATTGCCCGGAGCTTCTGGACGAA TGCCCACGCCTTGCCCTCCCATCCCTCCGGCTTCTTCTGCCCCACGCTCG TCTTGCGTCGGATCGAGAACCGGTTCCTCTTGGGGAACCTGTAGTACCAG GCGTTGAAACGCTTCTGAAATTGTTCCATCTTCTGCGGCTCGCTTGCGGA CGGCAGGCTGCCTCCGAACTTGGGCATCTCGGAGAGAAGCTTGACCAGGA CGAGGTCCCGGGTCACCGCAGCACCGTTCTTCCTGAGGGCGTTGATCTCG TCCACTATGGCCTCCTCCACCTCCTTCGTGTCAGCCTCGCGTCCGGGGTG CAGCGACCGCTGCTTGTCTGCGTTCTCCTGCTTCGAGAACTCGACCAGCT CCTCCTCCTGGTCCTCCCAGTCCCTCACGAGCTTCTTCTCGATGCCGAAC ACCTTCCCCGCACCACGCCTTCCGACTGGCTGCCCATCGCTGCACATGAG CCTGCTGTATATCAGCACCTCGAGCTTCTGAATGTTCTCGTAGGAGTTGC GCCCGCTCTTCCCAGACACTCGCCGCAGCGTGAACGGAGCCGGCGGGTAC TCTCTGGGAGCCGGACCCTTCCTCTTCTTGGCTGACGCGGACGGACGAGG CAAACTCCCCCAGCTGCTGCCCTCCTTGCTCTCTTTTTTCTCTTCACATT CTGTGCTCTTGTTCTTTTCCGGGCCCCTCTGCCGCTTGTAAAAGAGGGCA AGGCGTGGGCATTCGTCCAGAAGCTCCGGGCAATCCTGTGTGAGCACGCG CAGGACGCCGTCATCTTGGAGAGGGCAGCCCAGGCAGCGAAGGTCGGAGG GACCATGGAGATCGAGATGGACACCAAGGCGACCGCGGAGGAACTCCTGG CTGTTCAGGCCAAGATCTTCGCCCTGCTGTACAACATGAACCAGACACCG ATCCAGGCCGAGATGCCGTCGGAAACCACGTTGGAGAAGACTGGTGCGAA GAGCGCTTGCATCACGACGGGAGGTGAGGCGGTATGATGGTACAGTGTTG CATTGTTTAAATTAGTTCCAACCCAACACGGTGCGGAGATTTTATGCACG CGCAACAAAAGCGGGAAATTACAAAATTGCGGACAGCGGAAATACGGGAA AATAGAATATTTTTGAATATTTCGCATTGCTTCTGCCGTCACGTGCACAT GCTTCTTTTGCCTGCAAGGTACTGCTGTCACCGCCCCACTTCACGTTTGT TGTATTTATCAGCGATTAAATGATTCATTTAGTTGTATGTATATATTACC CTGTATTCCTGTTCGCCGTGGGCAGGCGCTCGGGGGAGAAGGTCTCCGCG CCGAGCAGGGGGCTGGTCGCGACGTGGGTGAAGGAGGTGTGGGAAGGCAT CTCGGAGCGGACCATTCCCTCGTGCTTCAAGGTCTGCGGTCTCACCCTCA ACCTCGACGGCAGCGAGGATCACGCGTGGTGCACCTCCACGTTTGGCGCC AA
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Coding sequence (CDS) from alignment at P-littoralis_Contig609:130552..135053+

>mRNA_P-littoralis_Contig609.44.1 ID=mRNA_P-littoralis_Contig609.44.1|Name=mRNA_P-littoralis_Contig609.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=138bp|location=Sequence derived from alignment at P-littoralis_Contig609:130552..135053+ (Pylaiella littoralis U1_48)
GATAGGGGACGTTTGAACTCGAGACTATCAATCTTTGCTATCCTGGCTGG
CTGGAGACTAATAATCCACGAGGTATCATCAGGCGCTCGGGGGAGAAGGT
CTCCGCGCCGAGCAGGGGGCTGGTCGCGACGTGGGTGA
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