mRNA_P-littoralis_Contig609.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig609.8.1
Unique NamemRNA_P-littoralis_Contig609.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig609.8.1 vs. uniprot
Match: A0A6H5KRJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.470e-7
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 2 
Query:    2 PRQPWXXXXXXXXXXXXXXXXXRVKSWQLPPKGCSWRRPPRSAGGTA 142
            PRQPWXXXXXXXXXXXXXXXXXRVKSWQLPPKGCSWRRPPRSAG TA
Sbjct:  536 PRQPWXXXXXXXXXXXXXXXXXRVKSWQLPPKGCSWRRPPRSAGVTA 582
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig609.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRJ5_9PHAE2.470e-797.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig609contigP-littoralis_Contig609:35062..36225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size714
Hectar predicted targeting categoryother localisation
Exons2
Cds size714
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.433576-CDS-P-littoralis_Contig609:35061..356331680791266.433576-CDS-P-littoralis_Contig609:35061..35633Pylaiella littoralis U1_48CDSP-littoralis_Contig609 35062..35633 -
1680791266.445774-CDS-P-littoralis_Contig609:36083..362251680791266.445774-CDS-P-littoralis_Contig609:36083..36225Pylaiella littoralis U1_48CDSP-littoralis_Contig609 36084..36225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig609.8.1prot_P-littoralis_Contig609.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig609 35062..36225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig609.8.1

>prot_P-littoralis_Contig609.8.1 ID=prot_P-littoralis_Contig609.8.1|Name=mRNA_P-littoralis_Contig609.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=238bp
AKAAVVEAEKARAAAPEEEAEKAGQVVAAATKRVQLAKTAKKRRRDGADT
AWVKDRKVVSRDTPGAVKITSGGASLKGERERRLLLWPPLLFVVVFFLSA
VTTFFLVLLLPFVSCLRPCMATAIALLCVGADRLFSVAIRFTCPSPLRPE
VERWAEIARGGCQVGPRPHRFPCAEPGPACTDGSKAPLSVSSASSVVLMS
RTSNTPRICLCPPLRTLLVWAAVADDRSRFSMIDSIL*
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mRNA from alignment at P-littoralis_Contig609:35062..36225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig609.8.1 ID=mRNA_P-littoralis_Contig609.8.1|Name=mRNA_P-littoralis_Contig609.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1164bp|location=Sequence derived from alignment at P-littoralis_Contig609:35062..36225- (Pylaiella littoralis U1_48)
GCCAAGGCAGCCGTGGTGGAGGCGGAGAAGGCCCGTGCCGCGGCGCCAGA
AGAGGAGGCGGAGAAGGCGGGTCAAGTCGTGGCAGCTGCCACCAAAAGGG
TGCAGCTGGCGAAGACCGCCAAGAAGCGCCGGAGGGACGGCGGTAAGTAA
GATTGCCGCCGGCGTCGCAGTCTCTGTGGGCTTGCTCGGGCGGCGCCAAG
GGTTTGTCGCCGCTCAGTGGCCTCCCCCGTTGTTACGGATTAGCACTGCT
TTGTGCTGGCGCCAACCTTTGCGAGATCGCCATCCGGCCCACCTGCCCCT
CCCCCCTCCGCCCCGAGGTTGAAAGATGGGCAGAGATCGCTCGCGGGGGT
TATCGAATGATACTGGTGTTTGCTCGAAACGTTGGGTAGATGTGCCGGCG
GGCCTGCTCCTTGACCCAATGGTGCCGAGCTGGGGCTTGTTTGCACCGAC
GGAAACAAGGCGCCTCTGTCTGTCGAACGTGCAACCGCAGTCGATGATCA
TCTTGCTTCGCCGGGGTGACACCCCTGCCGCGTCCCTCGCTCGCTCGCTC
GCTCGCCCCCGCACCAACATGTTATGGCCTGGTCTTTCGCAGCGGACACC
GCTTGGGTGAAAGACAGGAAGGTGGTTTCTCGAGACACCCCCGGAGCCGT
CAAGATCACGAGCGGGGGAGCGTCTTTGAAGGGTGAGAGAGAACGTCGGT
TGTTGTTGTGGCCTCCGTTGTTGTTCGTGGTTGTTTTCTTCTTGTCCGCG
GTGACGACGTTTTTTCTTGTACTTCTTTTGCCATTCGTTTCGTGCCTTCG
GCCTTGCATGGCCACCGCGATAGCACTGCTTTGTGTTGGCGCCGATCGTT
TGTTTTCCGTCGCCATCCGGTTTACCTGCCCCTCCCCCCTCCGCCCCGAG
GTTGAAAGATGGGCAGAGATCGCTCGCGGGGGTTGTCAAGTAGGACCAAG
GCCTCATCGTTTCCCATGTGCCGAGCCGGGGCCTGCTTGCACCGACGGAA
GCAAGGCGCCTCTGTCTGTCTCGTCTGCATCCTCCGTCGTCTTGATGTCA
CGCACGTCGAATACGCCGCGCATTTGTCTTTGTCCCCCTTTGCGTACTTT
GCTTGTGTGGGCAGCGGTGGCTGATGATCGCTCTCGTTTCTCCATGATTG
ACAGCATCTTGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig609:35062..36225-

>mRNA_P-littoralis_Contig609.8.1 ID=mRNA_P-littoralis_Contig609.8.1|Name=mRNA_P-littoralis_Contig609.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig609:35062..36225- (Pylaiella littoralis U1_48)
GCCAAGGCAGCCGTGGTGGAGGCGGAGAAGGCCCGTGCCGCGGCGCCAGA
AGAGGAGGCGGAGAAGGCGGGTCAAGTCGTGGCAGCTGCCACCAAAAGGG
TGCAGCTGGCGAAGACCGCCAAGAAGCGCCGGAGGGACGGCGCGGACACC
GCTTGGGTGAAAGACAGGAAGGTGGTTTCTCGAGACACCCCCGGAGCCGT
CAAGATCACGAGCGGGGGAGCGTCTTTGAAGGGTGAGAGAGAACGTCGGT
TGTTGTTGTGGCCTCCGTTGTTGTTCGTGGTTGTTTTCTTCTTGTCCGCG
GTGACGACGTTTTTTCTTGTACTTCTTTTGCCATTCGTTTCGTGCCTTCG
GCCTTGCATGGCCACCGCGATAGCACTGCTTTGTGTTGGCGCCGATCGTT
TGTTTTCCGTCGCCATCCGGTTTACCTGCCCCTCCCCCCTCCGCCCCGAG
GTTGAAAGATGGGCAGAGATCGCTCGCGGGGGTTGTCAAGTAGGACCAAG
GCCTCATCGTTTCCCATGTGCCGAGCCGGGGCCTGCTTGCACCGACGGAA
GCAAGGCGCCTCTGTCTGTCTCGTCTGCATCCTCCGTCGTCTTGATGTCA
CGCACGTCGAATACGCCGCGCATTTGTCTTTGTCCCCCTTTGCGTACTTT
GCTTGTGTGGGCAGCGGTGGCTGATGATCGCTCTCGTTTCTCCATGATTG
ACAGCATCTTGTAA
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