mRNA_P-littoralis_Contig608.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig608.25.1
Unique NamemRNA_P-littoralis_Contig608.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig608.25.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.380e-41
Identity = 74/139 (53.24%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:    1 ATLLGTPPSTDDVSNSFAAAMLEQATNDPSHIRDWLEQQVPEAAGECECEVPLPKWDKKNPNRTTTCGNQQGFLVSQLDIQGVLDRQKEREGNGDNVSYVLARTIRSNLQYEAAKLIGCTGMGNQCKRGHCFARAMQMF 417
            ATLL   P         + A+L+ A  +   +R  LE+Q   AA  C CE P P WDK +P+R TTCG QQ  +++ + IQ VLDRQKER+  GDNVSYVLART+R  LQY AA+ IG +G GNQC+RG CFARAM MF
Sbjct:   66 ATLLADEPPRAVKQTPLSKALLQTAVGNSGGVRALLEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMF 204
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BLAST of mRNA_P-littoralis_Contig608.25.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.410e-29
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:    1 ATLLGTPPSTDDVSNSFAAAMLEQATNDPSHIRDWLEQQVPEAAGECECEVPLPKWDKKNPNRTTTCGNQQGFLVSQLDIQGVLDRQKEREGNGDNVSYVLARTIRSNLQYEAAKLIGCTGMGNQCKRG 387
            ATL+   P      +  A A+L+ A  +P  +R  L +Q   AA  C C+ PL +W K +         QQ  +++ + IQ VLDRQK R+  GDNV YVLART+RSNLQY AA+ IG TG GNQC+RG
Sbjct:   33 ATLVADEPPRAAKQSPLATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG 161
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BLAST of mRNA_P-littoralis_Contig608.25.1 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.350e-17
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:    1 ATLLGTPPSTDDVSNSFAAAMLEQATNDPSHIRDWLEQQVPEAAGECECEVPLPKWDKKNPNRTTTCGNQQGFLVSQLDIQGVLDRQKEREGNGDNVSYVLARTIRS 321
            ATLL   P         A A+L+    +P  +R  L++Q   AA  C CE P P WDK +P+R TTCG QQ  +++ + IQ       ER+  GDNVSYVLART+RS
Sbjct:   65 ATLLADEPPRAANQTPLAKALLQA---NPGGVRALLKEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQ-------ERDSQGDNVSYVLARTVRS 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig608.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE1.380e-4153.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI1.410e-2945.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U2_9PHAE2.350e-1743.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig608contigP-littoralis_Contig608:160096..161247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons2
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.2431827-CDS-P-littoralis_Contig608:160095..1602691680791266.2431827-CDS-P-littoralis_Contig608:160095..160269Pylaiella littoralis U1_48CDSP-littoralis_Contig608 160096..160269 -
1680791266.2587922-CDS-P-littoralis_Contig608:161004..1612471680791266.2587922-CDS-P-littoralis_Contig608:161004..161247Pylaiella littoralis U1_48CDSP-littoralis_Contig608 161005..161247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig608.25.1prot_P-littoralis_Contig608.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig608 160096..161247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig608.25.1

>prot_P-littoralis_Contig608.25.1 ID=prot_P-littoralis_Contig608.25.1|Name=mRNA_P-littoralis_Contig608.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
ATLLGTPPSTDDVSNSFAAAMLEQATNDPSHIRDWLEQQVPEAAGECECE
VPLPKWDKKNPNRTTTCGNQQGFLVSQLDIQGVLDRQKEREGNGDNVSYV
LARTIRSNLQYEAAKLIGCTGMGNQCKRGHCFARAMQMF
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mRNA from alignment at P-littoralis_Contig608:160096..161247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig608.25.1 ID=mRNA_P-littoralis_Contig608.25.1|Name=mRNA_P-littoralis_Contig608.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1152bp|location=Sequence derived from alignment at P-littoralis_Contig608:160096..161247- (Pylaiella littoralis U1_48)
GCGACGCTTCTCGGCACCCCTCCTTCGACTGATGATGTTTCCAACTCTTT
CGCGGCGGCGATGTTGGAGCAGGCAACCAACGACCCCTCCCACATCCGCG
ACTGGCTGGAACAGCAAGTACCCGAGGCTGCAGGGGAGTGCGAATGCGAG
GTGCCTCTCCCGAAGTGGGACAAGAAAAATCCCAACCGGACGACAACTTG
CGGCAACCAACAGGGATTCCTAGTGTCTCAACTAGACATCCAGGTGTGTG
TGTTGTGGGACTGCAAGAGATGCCTGTATCAAAGCCCCAGCGCAAAATGA
CATGTTCGGCATAAAACATATGGAAAAAAACAAAAAACAACAGCAGCCGA
ACGCAGCAGCTGTACATTCACTACCGAAGACATTTGAGCTGAACATACTG
CTGTAGCAGCAGCATCCTTATTTTGAGTATCTCTGCTTTCACGGTTCATC
CTGCTACGTAGCATACCCGCTAAACATATACCTACCAGGTACTCGGAGTA
GTTCGAAGTATCATTATTGAAGAAAAACTGGTAACCGAAAACCACACGTG
TCACCACGCCAAAAATGACTGCCGCGGGCAGGGCTCCCTGATGGATACTC
ACAGCGGACGATCTGCCACTATCATACATATTGCAGCACTCGCAGTATTG
AGCGGCATGGTTGGATGATTTTTTTGTTTGTGCTCGTTGGTACTGTATGT
ACTATGATGAACGCTAAAAACAGATGCCTTCAATAATAAAAAGCAATCGA
AATTGGCGCTGGCATGAAATCATGTATACAAAATACGGCAGTCAGTAGAA
CTTGAAAACATCGCTCGGGTGTGCTTGGGGTCTCATCGCTCCAATAGCCT
GTTGGACACCATTTTATGTTGATGATAATTGTTTCTTGGGCTACTGAATA
TCCTGTATGCTCAGTGTACAACCACCCCCTCCCCCCCCCCCGCCTGCCCC
CGCGTCCCCAAAACGCATGACCTGACAGGGCGTGCTAGATCGCCAAAAGG
AGAGGGAGGGAAACGGCGACAACGTGTCGTATGTCCTTGCTCGCACGATC
CGCAGCAATTTGCAGTACGAGGCGGCGAAATTGATCGGGTGTACGGGCAT
GGGAAACCAGTGCAAGCGTGGACACTGCTTCGCACGAGCGATGCAGATGT
TC
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Coding sequence (CDS) from alignment at P-littoralis_Contig608:160096..161247-

>mRNA_P-littoralis_Contig608.25.1 ID=mRNA_P-littoralis_Contig608.25.1|Name=mRNA_P-littoralis_Contig608.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig608:160096..161247- (Pylaiella littoralis U1_48)
GCGACGCTTCTCGGCACCCCTCCTTCGACTGATGATGTTTCCAACTCTTT
CGCGGCGGCGATGTTGGAGCAGGCAACCAACGACCCCTCCCACATCCGCG
ACTGGCTGGAACAGCAAGTACCCGAGGCTGCAGGGGAGTGCGAATGCGAG
GTGCCTCTCCCGAAGTGGGACAAGAAAAATCCCAACCGGACGACAACTTG
CGGCAACCAACAGGGATTCCTAGTGTCTCAACTAGACATCCAGGGCGTGC
TAGATCGCCAAAAGGAGAGGGAGGGAAACGGCGACAACGTGTCGTATGTC
CTTGCTCGCACGATCCGCAGCAATTTGCAGTACGAGGCGGCGAAATTGAT
CGGGTGTACGGGCATGGGAAACCAGTGCAAGCGTGGACACTGCTTCGCAC
GAGCGATGCAGATGTTC
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