mRNA_P-littoralis_Contig605.32.24 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig605.32.24 vs. uniprot
Match: D7G3I4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I4_ECTSI) HSP 1 Score: 636 bits (1640), Expect = 4.630e-187 Identity = 638/1430 (44.62%), Postives = 749/1430 (52.38%), Query Frame = 1
Query: 1810 QNVLEDFTRATTKRSQSVHQMAAMFASSMSSDKSGDGGKQQLEEPDASHPGAMGRGNSRSLTPPRMRSKNALAGLVSAVPSDGGGGRDRMLESMVLEAHGQ--PEVYGGMEHHERLSVSPVRPTPALRLAEAAQPAVEYKSFSSLGSFSDMRARDLKKIHLDEALDATSHRVGNVKDIASAFKGESRPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTKGKELFMKKWAIGRIANGESVTPREGFKFLQSLGIDVQKTPRSGATSKRTFGRGSRKAAAATXXXXXXXXXXADCNPVSPSGDDDLNAEEDK---------TPASLS-GRGRTRSVPA--GRYGRPVGGVEAGESGEGGVAKLEASAWTLAMSQAVGGLVRPSADACAPKLRFHRRR-SGSEPRRPSPDSFPRAADTCRAPRSKSFFG-------ADVRAAA-AKAPLAPISDSGRLNEDDDEEEDAGIVPGSGLHG--FSASP------GLTATMNMWKKEGLLSGGSGGRRLRSQAFGGDRGPSLESLRVSVSSSR--LSDVQDVTPPRS--RGLRISMNPN--SPGRFDLSPGRTSNGVSPMTPTEMADRSATAALSAKVSWDCADTPPPALSLPGLQLPQRLF------SEGDGDD--ESVERFGGTPKNEEFGAGPATPMFVPG--SSRGFGGGRV------------GASGGCK-----EEEQGLEGLSPVGGGVYLAGVSPAGRDDWL-------------EGKTPR-SAVS-VLRPEPLSD-------------EEEQEEDTSVEIRKNEEEGDEEGVEGVMGLEE-------------VSSVEEAMALTESGIPTLESAGGVGGVGGG---AEGESAKGRSALV------------DE---IARKNEESVRSSAGEID-----LVTTAVDGAADADAVDATEADAAAATVAVDSDAXXXXXXXXXXXDDGVFAAVHD--GRVKEMEALTD-------ITPPSGVEEAPNAAGEMKRSSASSYDSGYAPDDEA-PSSVVLADIAAAAGVSRPAAVP-SSENSADDVGSNAEEAFPSTLKDGQGREEHDDDRSLEGEGEKTDVRGADDNGASDCEQATAGXXXXXXXXXXXXXXXXXVDAAVRETLDNLAAGVAILVGDDD-----FLRCSEVLSDLLSDAGDGHAPAEAIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADYAS--------SPVKGRA-AGEMLRTGSRKDLKIAVGSELHENTPPVPRLDWGINNILMDSPLTPSRYDAGEQEASTGSPSPERVAFTGLL-RGFLEGGGSTLEALADEVEETDRGSVGGYDATFEG-TRVSSTWEGSSNALMNPLSPLSVDSSPDVLEPSELLKSDK-WGGRLSVLSEGRESMVSGDSRTS 5631
+N LEDFTRAT KRSQSVHQMAAM+AS+ S S G +Q ++ DA PG +G L GLVSA SDGGG R LES+ LEA G+ E + + P P L +QP E ++S S SD+RARDLKK HLDEA + TS+R VKDIAS FKGESRPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATT+GKE FMKKWAIGRIANGES+ PREG+KFL+SLGIDV K PRS + F R P SPS D A+ TPA+ S GRGRT + PA G YGRP GG G G AK E++AW +AMSQAVG +V+ ADACAPKL RRR SGSEPRR +P PRA DTCRAP++K FF +DV+AA + P AP+SD+G + DE +D G G G S SP GL M +W++EG G GGRR +SQAF RGPSL+SLR SVSSSR LS + ++PPR G+RIS+NP SPGRF+LSPGR SNG SP+TPT MADRSA AALSAKVSWD A PPPA GLQLP RLF ++GDG S ERF G P E F G + G S G G V G GG + E GLS V G + K R SAVS ++ LSD E + +ED + E+ EE+ +EE V GV +E + + E + T V GG AEG DE + + ++ +SA E + A D A + E D +ATV + +D D +AV D R+ E L D I+ SG ++ AAG RSS DSGYAPD E P S+ D A AG +R A ++E + D S EE PS ++ G D+R + +D D XXXXXXXXXX VDAAVRETLDNLAAGVAIL G D+ L C EVLS+L S+ GD E V XXXXXXXXXXXXXXXXXXXX D + +P+ + AGE +RTG K LKIAVGSEL E PPVPRL WG+N+I MDSPLTPSRYD E+ ST S SP R FTGLL E GST AL E S GG + +FE TRVSS W G LM+PLSP SVDSSPD LE SEL K +K WGGRLSVLSEG ES +S +SR S
Sbjct: 62 KNALEDFTRATHKRSQSVHQMAAMYASTSSDKSSNADGIKQQQQGDAWLPGGNTKG---------------LGGLVSAFASDGGG---RSLESVALEAQGELSEEEIPAIREEAGEEPQSLSPPPKLSERSLSQPNPEATNYSVFSSTSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVPK-PRS-PNAATDFAR-----------------------PGSPSEKDITTAQSAPNKQTTTGMITPAAASRGRGRTGNTPATAGGYGRPGGG--GGGFAVGDAAKQESAAWEVAMSQAVGAVVKVDADACAPKLGLERRRRSGSEPRR-TPSDLPRAPDTCRAPKTKPFFXXXXXXXXSDVKAAPPSPLPPAPMSDNGDCLLEQDEADDFGDGGSRGFSGAGLSLSPAGSVTGGLALNMKLWRQEGEGGDGVGGRRPQSQAFD-SRGPSLDSLRASVSSSRMSLSPCRSLSPPRGGRAGVRISLNPRYESPGRFNLSPGRRSNGRSPLTPTAMADRSAAAALSAKVSWD-ATGPPPAPE--GLQLPTRLFVGGGEENKGDGISCSGSEERFDGNPA-EGFDMGGKEALLDAGWGESGGDAGKMVLEISRDDDDDNEGEEGGIRASFASSEFHEARGLSLVSRGXXXXXXXXXXXXXXXXXXXXXXXXXQETQAKAERLSAVSAIVGAGTLSDDXXXXXXXXXXXXEIKGDEDPAEEVGLTEEKQEEEEV-GVKEKDENLKXXXXXXXXXXXXNQDPEXXXEEEKVDTK--------VKGGEDLAEGXXXXXXXXXXXXXXXXXXXXXXDEGVNTSPSSSQACTASAAECPPTPEFAIAIAPDSATSEGEPNPQEQDGLSATVHIVADDEGSTSGAKEKDDAAEISAVMDDIARMDEQSILLDAETALMAISIDSG-DDVAEAAGGGARSSLD--DSGYAPDAEMNPPSLAGVDDDAPAGPARDADPQLAAERGSFDPASAGEEEGPSDVE---GETATGDERRVLASPVASDH---DXXXXXXXXXXXXXXXXXXXXXXXGGESTGGVDAAVRETLDNLAAGVAILAGGDEEECDELLGCDEVLSELQSEDGDA---GEGTVGDXXXXXXXXXXXXXXXXXXXXDEDPGVRGTKEAGGDGAGDVDAGGAVVEEHAPLAAKELAGESVRTGLHKRLKIAVGSELQEEEPPVPRLHWGVNHIAMDSPLTPSRYD-DERAPSTSSLSPCRQEFTGLLLEKGSESAGST-GALTIEPGLLGNSSNGGANDSFEEETRVSSPWRGDPERLMSPLSPFSVDSSPDALEESELTKPNKLWGGRLSVLSEGGESRLSRESRGS 1417
BLAST of mRNA_P-littoralis_Contig605.32.24 vs. uniprot
Match: A0A6H5KR12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR12_9PHAE) HSP 1 Score: 617 bits (1592), Expect = 5.850e-181 Identity = 746/1861 (40.09%), Postives = 890/1861 (47.82%), Query Frame = 1
Query: 1810 QNVLEDFTRATTKRSQSVHQMAAMFASSMSSDKSGDGGKQQLEEPDASHPGAMGRGNSRSLTPPRMR----SKNALAGLVSAVPSDGGGGRDRMLESM--------------VLEAHGQPEVYGGMEHHERLSV--------SPVRPTPALRLAEAAQPAVEYKSFSSLGSFSDMRARDLKKIHLDEALDATSHRVGNVKDIASAFKGESR---------------------------------PENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTKGKELFMKKWAIGRIANGESVTPREGFKFLQSLGIDVQKTPRSGATSKRTFGRGSRKAAAATXXXXXXXXXXADCNPVSPSGDDDLNAEEDKTPASLS-GRGRTRSVPA--GRYGRPVGGVEAGESGEGGVAKLEASAWTLAMSQAVGGLVRPSADACAPKLRFHRRR-SGSEPRRPSPDSFPRAADTCRAPRSKSFFGA----------DVRAAA-AKAPLAPISDSGRLNEDDDEEEDAGIVPGSGLHG--FSASP------GLTATMNMWKKEGLLSGGSGGRRLRSQAFGGDRGPSLESLRVSVSSSR--LSDVQDVTPPRS--RGLRISMNPN--SPGRFDLSPGRTSNGVSPMTPTEMADRSATAALSAKVSWDCADTPPPALSLPGLQLPQRLF------SEGDG--DDESVERFGGTPKNEEFGAGPATPMFVPG--SSRGFGGGRV------------GASGGCK-----EEEQGLEGLSPVGGGVYLAGVSPAGRDDWL-------------EGKTPR-SAVS-VLRPEPLSDEEEQEEDTSVEIRKNEEEGDEEGVEGVMGLEEVSSV--EEAMALTESGIPTLESAGGVGGVGGGAEGESAKGRSALVDEIARKNEESVRSSAGEID-----LVTTAVDGAADADAVDATEADAAAATV-AVDSDAXXXXXXXXXXXDDGVFAAVHD-GRVKEMEALTD-------ITPPSGVEEAPNAAGEMKRSSASSYDSGYAPDDEA-PSSVVLADIAAAAGVSRPAAVP-SSENSADDVGSNAEEAFPSTLKDGQGREEHDDDRSLEGEGEKTDVRGADDNGASDCEQATAGXXXXXXXXXXXXXXXXXVDAAVRETLDNLAAGVAILVGDDD-----FLRCSEVLSDLLSDAGDGHAPA-------EAIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADYASSPVKGRAAGEMLRTGSRKDLKIAVGSELHENTPPVPRLDWGINNILMDSPLTPSRYDAGEQEASTGSPSPERVAFTGLL-RGFLEGGGSTLEALADEVEETDRGSVGGYDATFEGTRVSSTWEGSSNALMNPLSPLSVDSSPDVLEPSELLKSDKW-GGRLSVLSEGRESMVSGDSRTSRAS-----GGXXXXXNPHGSRASGSLVRDNDEQXXXXXXXXXXXXXXXXXCTGSLNDVDCTSVETEEAAYAYPTSNRASTEPPPLPPADVAVAGAVVPGDGDASGPHVDECALLSEERDLAAAFDLAPASRNGDGSYYEHGESAADVAAAVEAXXXXXXXXXXXXXXXXEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVEEAAATLCEIGGAVPGDGAVGSPEGRGRVCPPP------------------------LASSPSGSADPLRGSIEVLPESQLA----------GDKEPEPGNAEECGDGSLVA---VDLGGDEDGDDEDLDAVRDQIRDSLTLDTY-NPYKDFDGLHDRDHFTAATVELDCKTPGSVFNFCRPRSGTVYASAKGAGPGFFTD 6777
++ LEDFTRAT KRSQSVHQMAAM+AS+ S S G +Q ++ DA P R +++ + + L GLVSA S G G + SM ++H +P + E ++V + P P L +QP E ++S S SD+RARDLKK HLDEA + TS+R VKDIAS FKGESR PENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATT+GKE FMKKWAIGRIANGES+ PREG+KFL+SLGIDV K PRS + GS +T + SG TPA+ S GRGRT + PA G YGRP GG G G AK E++AW +AMSQAVG LV+ ADACAPKL RRR SGSEPRR +P + PRA DTCRAP++KSF DV+AA + P AP+SD+G ++DE +D G G G S SP GL M +W++EG G GGRR +SQAFG RGPSL+SLR S+SSSR LS + ++PPR G+RIS+NP SPGRFDLSPGR SNG SP+TP MADRSA AALSAKVSWD PP + GLQLP RLF +GDG S ERF G P E F G + G S G G V G GG + E GLS V G + K R SAVS ++ LSD D +EEG GV+G LEE V +E + + ++ +SA E + A D A D E DA ATV +D D + ++D R E L D I+ SG + A A G RSS DSGYAPD E P S+ D A AG + A ++E + D S EE PS ++ G D++ + +D XXXXXXXXXXXX VDAAVRETL+NLAAGVAIL G D+ L C EVLS+L S+ GD A ++ XXXXXXXXXXXX ++A KG AGE +RTG K LKIAVGSEL E PPVPRL WG+N+I MDSPLTPSRYD ++ T S SP R FTGLL E GST + ++ + G D+ E TRVSS W G L++PLSP SV SSPD LE SEL K +K GGRLSVLSEG ES +S +SR S S G G +G DEQ A P+S ASTEP PP+ A A V G D AL ++D A + P+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EAA + G PG G+ SP+ + V P LA S G EV + L GDK G AEE D V V GGD + +D+ L R + ++L LD NPY+DFD LHDRD++TA TV+LDCKTPG +FNFCRPRSGTVY SA G+GPGFF+D
Sbjct: 62 KDALEDFTRATHKRSQSVHQMAAMYASTSSDKSSNADGIKQQQQGDAWLPEGAFRSTGSNISNNSLSMAGGNTKGLGGLVSAFASGGSGSYQPLSLSMRRYQPPLSLSFLIDYNQSH-RPYSFPLKSEEEVVAVREGAGEGPQSLSPPPKLSEQSLSQPNPEATNYSVFSSNSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRQATAVNTSTAGCHTSEPRTPVPDPGRNQLLFSEPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVPK-PRSPNAAADFASPGSPSEKDST---------------TAQSGTTKQTTTGMTTPAAASRGRGRTGNTPATAGGYGRPGGG--GGGFAVGDAAKQESAAWEVAMSQAVGALVKVDADACAPKLGLERRRRSGSEPRR-TPSNLPRAPDTCRAPKTKSFXXXXXXXXXXXXXDVKAAPPSPLPPAPMSDNGDRLLEEDEADDFGDGGSRGFSGAGLSLSPAGSVTGGLALNMKLWRQEGEGGDGVGGRRPQSQAFG-SRGPSLDSLRASISSSRMSLSPCRSLSPPRGGRAGVRISLNPRYQSPGRFDLSPGRRSNGRSPLTPMAMADRSAAAALSAKVSWDATGAPP---APEGLQLPSRLFVGSGEVGKGDGLSCSGSEERFDGNPA-EGFDMGGKEGLLDAGWGESGGDAGKMVLEISRDDDXXXXGEEGGIRASFASSEFHEARGLSLVSHGFRXXXXXXXXXXXXXXXXXXXXXXPQETQAKAKRLSAVSAIVGAGTLSD------DEXXXXXXXDEEG---GVKGDEDLEENQEVGVKEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGANTSPSSSQACTASAAECPPTPELFIAIAPDSATSEGQPDLQEQDALLATVHVIDDDEGSTSGAMEKDDAAEISTVINDIARTDEESILLDAETALMAISNDSGNDVA-EAVGGGTRSSLD--DSGYAPDAEMNPPSLAGVDDDAPAGPADDADPQLAAERGSFDPASAREEEGPSDVE---GETATGDEQRVSASPVASDXXXX---XXXXXXXXXXXXXXXXXXXXXXXESTGGVDAAVRETLNNLAAGVAILAGGDEDECDELLGCDEVLSELQSEDGDAGAGTVGDTAREDSAEXXXXXXXXXXXXDEAPGVRGTKEGGSDGAGAADAGGAVVEEHAPLAAKG-LAGESVRTGLHKRLKIAVGSELQEEEPPVPRLHWGVNHIAMDSPLTPSRYD-DDRVPPTSSLSPCRQEFTGLLVEKGSESAGSTGAHTIEPGLLGNKSNGGANDSFEEETRVSSPWRGDPERLISPLSPFSVASSPDALEGSELTKPNKLCGGRLSVLSEGGESRLSRESRGSVESKVTSVAGDDTAGPQKGRHTTGGA----DEQT------------------------------------ASPSSQWASTEPLSPPPSIRAAASPAV-GSXXXXXXXGDGTAL--PQQDTAGSASSFPSQES-------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEPRRAPEAALET-PLPGTPPGGGS--SPQSKLSVSASPPXXXXXXXXVESSVVIDVSAEEETLAMGSDVSTGGSTGLSEVAAKDGLVDEGRHYCCEGGDK----GLAEESVDVETVPNGLVSEGGDSEQEDKGLAVERGEAPEALRLDDMPNPYEDFDELHDRDYYTARTVQLDCKTPGDIFNFCRPRSGTVYQSANGSGPGFFSD 1784 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig605.32.24 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig605.32.24 >prot_P-littoralis_Contig605.32.24 ID=prot_P-littoralis_Contig605.32.24|Name=mRNA_P-littoralis_Contig605.32.24|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1785bp MTHPSHSHLDALFSLLSLVLVLVFVFFVLLVLLLFVLLLFVLFVIVLFVLback to top mRNA from alignment at P-littoralis_Contig605:140701..168022+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig605.32.24 ID=mRNA_P-littoralis_Contig605.32.24|Name=mRNA_P-littoralis_Contig605.32.24|organism=Pylaiella littoralis U1_48|type=mRNA|length=27322bp|location=Sequence derived from alignment at P-littoralis_Contig605:140701..168022+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig605:140701..168022+ >mRNA_P-littoralis_Contig605.32.24 ID=mRNA_P-littoralis_Contig605.32.24|Name=mRNA_P-littoralis_Contig605.32.24|organism=Pylaiella littoralis U1_48|type=CDS|length=5355bp|location=Sequence derived from alignment at P-littoralis_Contig605:140701..168022+ (Pylaiella littoralis U1_48)back to top |