mRNA_P-littoralis_Contig605.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig605.25.1
Unique NamemRNA_P-littoralis_Contig605.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 9.470e-27
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:  193 EKHLTIGRVRRFARRTRDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLGKQ 381
            EKHLTIGRVRRFARRTRDYCRAYREIQLG  DGQGLQLVEKMR+TQK HRNIL+MEPGFLGKQ
Sbjct:  322 EKHLTIGRVRRFARRTRDYCRAYREIQLGAADGQGLQLVEKMRNTQKAHRNILDMEPGFLGKQ 384
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BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.290e-25
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:  193 EKHLTIGRVRRFARRTRDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLGKQ 381
            EKHLTIGRVRRFARRTRDYCRAYREIQLG  DGQGLQLVEKMR+TQK HRNIL+MEPGFLGKQ
Sbjct:  916 EKHLTIGRVRRFARRTRDYCRAYREIQLGAADGQGLQLVEKMRNTQKAHRNILDMEPGFLGKQ 978
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BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.820e-25
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:  193 EKHLTIGRVRRFARRTRDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLGKQ 381
            EKHL IGRVRRFARRTRDYCRAYRE QLG +DGQGLQLVEKMRDTQK HRNIL MEPGFLGKQ
Sbjct:  972 EKHLMIGRVRRFARRTRDYCRAYRETQLGAVDGQGLQLVEKMRDTQKAHRNILKMEPGFLGKQ 1034
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BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.380e-25
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:  193 EKHLTIGRVRRFARRTRDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLGKQ 381
            EKHLTIGRVRRFARR RDYCRAYRE QLG +DGQGLQLVEKMRDTQK HRNIL+MEPGFLGKQ
Sbjct:  682 EKHLTIGRVRRFARRKRDYCRAYREKQLGAVDGQGLQLVEKMRDTQKAHRNILDMEPGFLGKQ 744
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BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5JMU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.530e-17
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:  241 RDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLGKQ 381
            RDYCRAYREIQLG +DGQGLQLVEKMRDTQK HRNIL+MEPGFLGKQ
Sbjct:  287 RDYCRAYREIQLGAVDGQGLQLVEKMRDTQKAHRNILDMEPGFLGKQ 333
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BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5KU60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU60_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.860e-17
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:  241 RDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLG 375
            RDYCRAYREIQLG +DGQGLQLVEKMRDTQK HRN+L+MEPGFLG
Sbjct:   94 RDYCRAYREIQLGAVDGQGLQLVEKMRDTQKAHRNMLDMEPGFLG 138
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BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5KM16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM16_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.920e-15
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  193 EKHLTIGRVRRFARRTRDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLGKQ 381
            +K+LTIGRVRRFARRTRDYCRAYREI L  +  +  + +EKMR  QK HRNIL+M+  FLG Q
Sbjct:   62 DKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFLEKMRKIQKAHRNILDMKTSFLGDQ 124
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BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5JCU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.550e-15
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  193 EKHLTIGRVRRFARRTRDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLGKQ 381
            +K+LTIGRVRRFARRTRDYCRAYREI L  +  +  + +EKMR  QK HRNIL+ME  FLG Q
Sbjct:  148 DKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRNILDMETSFLGDQ 210
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BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.350e-14
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  193 EKHLTIGRVRRFARRTRDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLGKQ 381
            +K+LTIGRVRRFARRTRDYCRAYREI L  +  +  + +EKMR  QK HRNIL+ME  FLG Q
Sbjct:  581 DKYLTIGRVRRFARRTRDYCRAYREIALSGVVIRSNEFIEKMRKIQKAHRNILDMETSFLGDQ 643
[Close]
BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Match: A0A6H5K836_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K836_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.020e-14
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  193 EKHLTIGRVRRFARRTRDYCRAYREIQLGVLDGQGLQLVEKMRDTQKPHRNILNMEPGFLGKQ 381
            +K+LT+GRVRRFARRTRD+CRAYR+I L          +EKMR  QK HRNIL+ME  FLG Q
Sbjct:   86 DKYLTVGRVRRFARRTRDHCRAYRDIALSGGFIMSKDFIEKMRKNQKAHRNILDMETSFLGDQ 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig605.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5K769_9PHAE9.470e-2792.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE1.290e-2592.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE5.820e-2590.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE6.380e-2590.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMU9_9PHAE1.530e-1791.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU60_9PHAE1.860e-1788.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM16_9PHAE3.920e-1565.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU7_9PHAE4.550e-1566.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXL0_9PHAE8.350e-1466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K836_9PHAE9.020e-1461.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig605contigP-littoralis_Contig605:98835..100106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1272
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791261.8611128-UTR-P-littoralis_Contig605:98834..988611680791261.8611128-UTR-P-littoralis_Contig605:98834..98861Pylaiella littoralis U1_48UTRP-littoralis_Contig605 98835..98861 +
1680791261.8848536-UTR-P-littoralis_Contig605:99218..1001061680791261.8848536-UTR-P-littoralis_Contig605:99218..100106Pylaiella littoralis U1_48UTRP-littoralis_Contig605 99219..100106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791261.8755918-CDS-P-littoralis_Contig605:98861..992181680791261.8755918-CDS-P-littoralis_Contig605:98861..99218Pylaiella littoralis U1_48CDSP-littoralis_Contig605 98862..99218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig605.25.1prot_P-littoralis_Contig605.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig605 98862..99218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig605.25.1

>prot_P-littoralis_Contig605.25.1 ID=prot_P-littoralis_Contig605.25.1|Name=mRNA_P-littoralis_Contig605.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MASSRFPAATDQWEKTSIPVRYPVLVGVFQAEVSAEVQRRSPEALARQHR
KIDGHEKHLTIGRVRRFARRTRDYCRAYREIQLGVLDGQGLQLVEKMRDT
QKPHRNILNMEPGFLGKQ*
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mRNA from alignment at P-littoralis_Contig605:98835..100106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig605.25.1 ID=mRNA_P-littoralis_Contig605.25.1|Name=mRNA_P-littoralis_Contig605.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1272bp|location=Sequence derived from alignment at P-littoralis_Contig605:98835..100106+ (Pylaiella littoralis U1_48)
GCGCAGCACCGTGCAGAGAGCGACAGCATGGCCTCCAGCCGCTTCCCCGC
AGCCACAGACCAGTGGGAGAAGACATCCATACCCGTGCGCTATCCAGTAC
TCGTGGGGGTTTTCCAAGCAGAAGTTTCGGCGGAAGTACAACGACGAAGT
CCTGAAGCACTTGCACGCCAACATCGAAAAATCGATGGGCATGAAAAGCA
TTTGACGATCGGTCGGGTGCGACGCTTCGCCCGACGCACACGAGACTACT
GCCGAGCTTACCGCGAAATACAGCTGGGTGTGCTAGACGGCCAGGGTCTC
CAGCTGGTCGAGAAAATGCGCGACACCCAAAAGCCTCACCGCAACATCCT
GAACATGGAGCCCGGTTTCCTTGGCAAGCAGTGACCTTGGCCGGCCGGCC
GGAAGGGGGGGGTACATTCTACTGTAGAGATACATGTATGTTATTGAAGT
TTGTATACAAGTAGCTGCACATTTTACGCAGCGTGGGTGATGTTGTTGTC
TTTGTATTACAGGTACAAGTTTTAGCATAGGTAGGTGTGGTTGTGCGCAA
AATATCGCGTGGGAGCTGCTGCCGTGAAAACCTGCTTTTTTTCGGTCGAG
TTGACATATTTGTACGAGTCAGTGCACGCGCATTTTGGCGTCGTGAGCTT
TTCATACATATTTACTTTTTCCTATTACTCGAGTACCTGGTAGTAGTTTT
AACGAATAGCAAGAGATATTTTCACCGGAAATATATCACATGTGCTGTGT
GTTGCACTCGTTGCATGAGCCACAGACGGTCTTAAAGTATTGTATAGTCG
TTACATGTTTCACATCATCACGCCCAGTGGGTACAACTCATGTACGTCAT
GGGCTGGTAGGCAGCGCCAGTGTGGCTCGTACCAACTACACCGCTTTCGC
ACACGTCTCTGCAGTCCCTAGACCCCTCATTTTCCTTTATATATGGTGTG
CCCCTGCACCCAGGTTCTGAGCTATGGGGTATGACTATAGAATAGCGAAG
CTTGGAGGGCAACTGAAAAACTTTTTTTTTATTTCGGTCATTTCACATAC
ACTCGTGGAGGTAGACAGGAGACCGGGGTAAGTGCGAGGTTGCAATGTAG
GAGGGTCTTTCGTCTCGGGCGGGGATCAGGGATTCTGGCACCTTCCACAC
ACACACGTCGGCCCTCACATCTCGGCACGCGGTCCACGCGCGGAGGCGAA
ACCTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTCGAGTCCAAGGT
TCAGCGACGGAAGGTTCGCGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig605:98835..100106+

>mRNA_P-littoralis_Contig605.25.1 ID=mRNA_P-littoralis_Contig605.25.1|Name=mRNA_P-littoralis_Contig605.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig605:98835..100106+ (Pylaiella littoralis U1_48)
ATGGCCTCCAGCCGCTTCCCCGCAGCCACAGACCAGTGGGAGAAGACATC
CATACCCGTGCGCTATCCAGTACTCGTGGGGGTTTTCCAAGCAGAAGTTT
CGGCGGAAGTACAACGACGAAGTCCTGAAGCACTTGCACGCCAACATCGA
AAAATCGATGGGCATGAAAAGCATTTGACGATCGGTCGGGTGCGACGCTT
CGCCCGACGCACACGAGACTACTGCCGAGCTTACCGCGAAATACAGCTGG
GTGTGCTAGACGGCCAGGGTCTCCAGCTGGTCGAGAAAATGCGCGACACC
CAAAAGCCTCACCGCAACATCCTGAACATGGAGCCCGGTTTCCTTGGCAA
GCAGTGA
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