mRNA_P-littoralis_Contig605.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig605.33.1
Unique NamemRNA_P-littoralis_Contig605.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig605.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig605contigP-littoralis_Contig605:140720..142449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size471
Hectar predicted targeting categoryother localisation
Exons3
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791260.6740255-UTR-P-littoralis_Contig605:140719..1408021680791260.6740255-UTR-P-littoralis_Contig605:140719..140802Pylaiella littoralis U1_48UTRP-littoralis_Contig605 140720..140802 -
1680791260.6858566-UTR-P-littoralis_Contig605:141469..1415141680791260.6858566-UTR-P-littoralis_Contig605:141469..141514Pylaiella littoralis U1_48UTRP-littoralis_Contig605 141470..141514 -
1680791260.7301717-UTR-P-littoralis_Contig605:142409..1424491680791260.7301717-UTR-P-littoralis_Contig605:142409..142449Pylaiella littoralis U1_48UTRP-littoralis_Contig605 142410..142449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791260.7042117-CDS-P-littoralis_Contig605:141514..1416911680791260.7042117-CDS-P-littoralis_Contig605:141514..141691Pylaiella littoralis U1_48CDSP-littoralis_Contig605 141515..141691 -
1680791260.7189631-CDS-P-littoralis_Contig605:142283..1424091680791260.7189631-CDS-P-littoralis_Contig605:142283..142409Pylaiella littoralis U1_48CDSP-littoralis_Contig605 142284..142409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig605.33.1prot_P-littoralis_Contig605.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig605 141515..142409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig605.33.1

>prot_P-littoralis_Contig605.33.1 ID=prot_P-littoralis_Contig605.33.1|Name=mRNA_P-littoralis_Contig605.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MCGRVPRPRGSLSHAVGKKEAVKRNYVEERWGERGGAWWGEPRAVMETTT
DRQTSRQGWVYRLAPPDNEGLYRGKGGSGTDQQGGHQRQRQRQREGARES
*
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mRNA from alignment at P-littoralis_Contig605:140720..142449-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig605.33.1 ID=mRNA_P-littoralis_Contig605.33.1|Name=mRNA_P-littoralis_Contig605.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1730bp|location=Sequence derived from alignment at P-littoralis_Contig605:140720..142449- (Pylaiella littoralis U1_48)
TACACCAGGGCAGACGCTCACGCACGTACAATCCCTGCCTATGTGTGGAC
GGGTGCCACGCCCAAGGGGTTCGCTATCGCACGCTGTTGGCAAAAAGGAA
GCAGTCAAACGAAATTACGTAGAAGAGCGATGGGGGGAGAGGGGCGGAGC
ATGGTGGGGTGAGCCGGTGAGCCCGTAGTAGGCGTGAGGCGGACATGTTG
ATGCGGACAGCCGCGATTTGGTCGTACAGCAGCAGTATAGAGCATATTGG
AATCTTACATGATATCCTGCTGTATCAAACGAAATGCTCACCTTCTGCTC
ACGTGTACATAGTAGACGCATTGGTGTCGCATGCTGTGTACAAGTACGTT
GTCGCATGGTATGATATTATATGAATAATTAGAAGGTGTTTTGTGTCTTT
TGTGCGCGCATTGTTGCATTCGTCCCATTTATTCCGGCGCCTGTCCTCTA
GCCTAAAAACACCTTTCGGCAATAATATCTGTCAAAATCCTTCCGTATCA
AGTACAAGTACGGAGTGTGTATGAAGCGCCGAGGTGAGGCTGAGGTGCAT
GACACCTGACACGACGAAGGATGAAGATACGTATGATATGTACTGGAGTA
TGTAGGACAGGAAGCGAAGACGTGAAGCGTAAGGGTAATCATTTTCTGCT
TTCTTCGCGGTGGGCCGAAGATAGTTTTGTGAGAGAGTCGATCCATTTTC
CGCGAATCTGTTCCGTTTTTTTCGTCAATGCAATGCACACAATGCTCCCC
CGCGGCAGCGGGCTGTCATGGAGACAACAACAGACAGACAGACAAGCAGA
CAAGGGTGGGTCTACCGCCTCGCCCCGCCAGACAACGAAGGCCTGTATCG
CGGCAAAGGGGGAAGCGGCACCGACCAGCAGGGCGGGCATCAGCGCCAGC
GGCAGAGGCAGAGAGAAGGAGCGCGGGAGAGCTGAGTGCTCGTCTGAAAA
AGTAAACGGTAGCTCTCCGGAAAAAGCGCGGTGAGGCCGAAGTTGGTATC
CCGCCGCGTGGGTGCTACGCACGAGTATATAAAGAAAGTGGTCCAACCCC
ATCACGACAAACGATGAAGCTCACGGAGGAACGTTGACTATTTGCTACCT
GGTACTGTTTGCTGCAAATGATTGATTGCTGTGGTGGGGCCGCTGGCCAG
CCCTTACCTGTCTATGCTCCAGAGAGATAAGCTTGTGAGCGAAGTACTGC
TGTGCTGCCGTGGATGCGGGCAGGACCATACAAAACACACCTCCAACGGT
TTGGAACAGCAGTCGTGTGGCAACCAGAACAAACACAACAGGAAGCGCGA
AAACAGAGACGGGAGATGGGAGATGGGAGTACCGCAACCTGACCCGCCCC
AAACCGCAATCCCGAGCTAGCGAGAGACACTAGCGCCCCATTCGTGTGGG
AGGCCAGCACAATCGAGATCTTTCTTGCCGGCACACGGCTTATCCTCGAC
TTGAGTCACGTCGGTGTAGGTAGGCACGCCGAGACAGCAGTCTCTTTGCC
AGGCCTTCCATTTTCAACTTGCGCGGCAAAACTCACCGTTGGTGCTTTTC
AAAATCGCTGTATCGTCTCTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGT
GCTGCCGGTGTGGTTGGGCTTCTCTACTTATGGAACGGTGAGGCAAGGTA
CGCTTCGTAGAGGCTTTTGTCGCTCTAGTCAGTCCTCCTGCTCCACGCCG
TCAATCCGTGCTAGGAATACGCAAGACTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig605:140720..142449-

>mRNA_P-littoralis_Contig605.33.1 ID=mRNA_P-littoralis_Contig605.33.1|Name=mRNA_P-littoralis_Contig605.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig605:140720..142449- (Pylaiella littoralis U1_48)
ATGTGTGGACGGGTGCCACGCCCAAGGGGTTCGCTATCGCACGCTGTTGG
CAAAAAGGAAGCAGTCAAACGAAATTACGTAGAAGAGCGATGGGGGGAGA
GGGGCGGAGCATGGTGGGGTGAGCCGCGGGCTGTCATGGAGACAACAACA
GACAGACAGACAAGCAGACAAGGGTGGGTCTACCGCCTCGCCCCGCCAGA
CAACGAAGGCCTGTATCGCGGCAAAGGGGGAAGCGGCACCGACCAGCAGG
GCGGGCATCAGCGCCAGCGGCAGAGGCAGAGAGAAGGAGCGCGGGAGAGC
TGA
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