mRNA_P-littoralis_Contig604.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig604.49.1
Unique Name	mRNA_P-littoralis_Contig604.49.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 7.520e-8
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = -3

Query:  414 VGAITPQSRLVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGST 611
            V A   Q RL+ AGA+ARQ DGRLPKR+MF  L  GEDPGRG P ++    LKD  +     +GST
Sbjct:  969 VEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGST 1034

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.170e-7
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = -3

Query:  414 VGAITPQSRLVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGST 611
            V A   Q RL+ AGA+ARQ DGRLPKR+MF  L  GEDPG+G P ++    LKD  +     +GST
Sbjct:  170 VEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGST 235

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.240e-7
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = -3

Query:  414 VGAITPQSRLVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGST 611
            V A   Q RL+ AGA+ARQ DGRLPKR+MF  L  GE+PGRG P ++    LKD  +     HGST
Sbjct:  472 VEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGST 537

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.420e-7
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = -3

Query:  414 VGAITPQSRLVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGST 611
            V A   Q RL+ AGA+ARQ DGRLPKR+MF  L  GE+PGRG P ++    LKD  +     HGST
Sbjct:  170 VEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGST 235

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.740e-7
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = -3

Query:  414 VGAITPQSRLVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGST 611
            V A   Q RL+ AGA+ARQ DGRLPKR+MF  L  GEDPG+G P ++    LKD  +     +GST
Sbjct:  189 VEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGST 254

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.810e-7
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = -3

Query:  357 QSRLVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGSTDGGH----LL*RFWYWHSPVDKG 593
            Q RL+ AGALARQ DGRLPKR+M   L  GE  GRG+P ++    LKD  +     HGSTD       +L   W   + VD+G
Sbjct:  762 QRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLKMFEAEHGSTDAEPCFFGVLETTWVEKAKVDRG 844

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5JS41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS41_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.900e-7
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = -3

Query:  414 LVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGST 584
            ++ AGA+ARQ DGRLPKR+MF  L  GE+PGRG P ++    LKD  +     HGST
Sbjct:    1 MLVAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMIEARHGST 57

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.070e-7
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = -3

Query:  414 VGAITPQSRLVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGST 611
            V A   Q RL+ AGA+ARQ DGRLPKR+MF  L  GEDPG+G P ++    LKD  +     +GST
Sbjct:  311 VEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGST 376

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.290e-7
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = -3

Query:  414 VGAITPQSRLVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGST 611
            V A   Q RL+ AGA+ARQ DGRLPKR+MF  L  GEDPG+G P ++    LKD  +     +GST
Sbjct:  495 VEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGST 560

[Close]

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.350e-7
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = -3

Query:  414 VGAITPQSRLVSAGALARQGDGRLPKRIMFRILALGEDPGRGRPTRHRAKSLKDGFQACGGTHGST 611
            V A   Q RL+ AGA+ARQ DGRLPKR+MF  L  GEDPG+G P ++    LKD  +     +GST
Sbjct:  584 VEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGST 649

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig604.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K7U5_9PHAE	7.520e-8	53.03	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JLH5_9PHAE	1.170e-7	51.52	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KA81_9PHAE	1.240e-7	53.03	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K4M0_9PHAE	1.420e-7	53.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWS4_9PHAE	1.740e-7	51.52	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KN66_9PHAE	1.810e-7	45.78	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JS41_9PHAE	1.900e-7	52.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLC4_9PHAE	2.070e-7	51.52	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K9G5_9PHAE	2.290e-7	51.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQ91_9PHAE	2.350e-7	51.52	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig604	contig	P-littoralis_Contig604:176774..177389 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	616
Hectar predicted targeting category	other localisation
Exons	1
Cds size	477

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791259.2275004-UTR-P-littoralis_Contig604:176773..176819	1680791259.2275004-UTR-P-littoralis_Contig604:176773..176819	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig604 176774..176819 +
1680791259.2593465-UTR-P-littoralis_Contig604:177296..177389	1680791259.2593465-UTR-P-littoralis_Contig604:177296..177389	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig604 177297..177389 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791259.2393024-CDS-P-littoralis_Contig604:176819..177296	1680791259.2393024-CDS-P-littoralis_Contig604:176819..177296	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig604 176820..177296 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig604.49.1	prot_P-littoralis_Contig604.49.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig604 176820..177296 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig604:176774..177389+
coding sequence from alignment at P-littoralis_Contig604:176774..177389+

protein sequence of mRNA_P-littoralis_Contig604.49.1

>prot_P-littoralis_Contig604.49.1 ID=prot_P-littoralis_Contig604.49.1|Name=mRNA_P-littoralis_Contig604.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MSVNLVHAALHVPSLPSCSPLSPSSHHCESSIVSLPLRLLSQDSPSRSFS
SWVFLDCTGFFLVTFSRSLSARLLLVLVPGAVRKPRSPRHHPCVPRYSLL
LLRGLCPQGCANTKNVTVGARHLSNRACLHKLGNRPSTISPGVASGGLGP
GPRPARVF*

mRNA from alignment at P-littoralis_Contig604:176774..177389+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig604.49.1 ID=mRNA_P-littoralis_Contig604.49.1|Name=mRNA_P-littoralis_Contig604.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=616bp|location=Sequence derived from alignment at P-littoralis_Contig604:176774..177389+ (Pylaiella littoralis U1_48)
GGGGATTATCGTCAGTAGGAGAGTGCACTTGATCACACACAGCAGCATGT
CGGTCAATCTGGTGCATGCCGCGCTACACGTTCCATCCCTTCCCTCATGC
TCTCCTCTGTCGCCGTCGTCACATCATTGTGAGTCTTCCATTGTGAGTCT
TCCCCTACGCTTGCTTTCCCAAGATTCCCCCTCCCGCTCCTTCTCCTCCT
GGGTCTTCCTTGATTGCACTGGGTTCTTTCTTGTCACGTTTTCCCGCTCG
TTGTCTGCTCGCCTCCTTCTCGTCCTCGTGCCAGGCGCGGTCAGAAAACC
TCGCAGCCCTCGTCACCATCCCTGTGTACCACGGTACTCCCTTCTTCTCC
TTCGTGGCCTTTGTCCACAGGGCTGTGCCAATACCAAAAACGTTACAGTA
GGTGCCCGCCATCTGTCGAACCGTGCGTGCCTCCACAAGCTTGGAAACCG
TCCTTCAACGATTTCGCCCGGTGTCGCGTCGGGCGGCCTCGGCCCGGGTC
CTCGCCCAGCGCGAGTATTCTGAACATTATCCGCTTTGGGAGTCGTCCGT
CGCCTTGTCTGGCCAAAGCTCCCGCGGAAACTAGTCGACTTTGCGGTGTA
ATCGCTCCCACACATT

Coding sequence (CDS) from alignment at P-littoralis_Contig604:176774..177389+

>mRNA_P-littoralis_Contig604.49.1 ID=mRNA_P-littoralis_Contig604.49.1|Name=mRNA_P-littoralis_Contig604.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig604:176774..177389+ (Pylaiella littoralis U1_48)
ATGTCGGTCAATCTGGTGCATGCCGCGCTACACGTTCCATCCCTTCCCTC
ATGCTCTCCTCTGTCGCCGTCGTCACATCATTGTGAGTCTTCCATTGTGA
GTCTTCCCCTACGCTTGCTTTCCCAAGATTCCCCCTCCCGCTCCTTCTCC
TCCTGGGTCTTCCTTGATTGCACTGGGTTCTTTCTTGTCACGTTTTCCCG
CTCGTTGTCTGCTCGCCTCCTTCTCGTCCTCGTGCCAGGCGCGGTCAGAA
AACCTCGCAGCCCTCGTCACCATCCCTGTGTACCACGGTACTCCCTTCTT
CTCCTTCGTGGCCTTTGTCCACAGGGCTGTGCCAATACCAAAAACGTTAC
AGTAGGTGCCCGCCATCTGTCGAACCGTGCGTGCCTCCACAAGCTTGGAA
ACCGTCCTTCAACGATTTCGCCCGGTGTCGCGTCGGGCGGCCTCGGCCCG
GGTCCTCGCCCAGCGCGAGTATTCTGA