mRNA_P-littoralis_Contig604.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig604.35.1
Unique NamemRNA_P-littoralis_Contig604.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig604.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig604contigP-littoralis_Contig604:135111..135553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size443
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791259.1461449-CDS-P-littoralis_Contig604:135110..1354491680791259.1461449-CDS-P-littoralis_Contig604:135110..135449Pylaiella littoralis U1_48CDSP-littoralis_Contig604 135111..135449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791259.155911-UTR-P-littoralis_Contig604:135449..1355531680791259.155911-UTR-P-littoralis_Contig604:135449..135553Pylaiella littoralis U1_48UTRP-littoralis_Contig604 135450..135553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig604.35.1prot_P-littoralis_Contig604.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig604 135111..135449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig604.35.1

>prot_P-littoralis_Contig604.35.1 ID=prot_P-littoralis_Contig604.35.1|Name=mRNA_P-littoralis_Contig604.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MLESGARAGVGGRGIRPPCGGPVRAHRVLVTYVVEGNTAVAGRRFCALEE
NLTRTTVKNRKFFSPDRQLVATERFRRAFRAAFDAGFREWARKLENEGTK
LQSGRQGGGYHLR
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mRNA from alignment at P-littoralis_Contig604:135111..135553-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig604.35.1 ID=mRNA_P-littoralis_Contig604.35.1|Name=mRNA_P-littoralis_Contig604.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=443bp|location=Sequence derived from alignment at P-littoralis_Contig604:135111..135553- (Pylaiella littoralis U1_48)
GACGACATCAAGATGACCGCTGACGCGTACCAGACGAACGGCGATGGAGC
ACGGTAGATACTCGCCATTGGCACTGTGGAGTTAGGAAACTTCTCAAAAA
ACACATGCTTGAGAGCGGGGCGAGGGCGGGCGTAGGAGGTCGTGGAATTA
GACCGCCGTGTGGAGGCCCTGTTCGGGCTCACAGGGTTCTGGTGACTTAC
GTGGTGGAAGGGAACACAGCAGTGGCGGGGCGCCGCTTCTGTGCGTTGGA
GGAGAATTTGACCCGGACGACGGTCAAGAATCGGAAATTCTTCTCGCCAG
ACCGGCAGCTGGTGGCAACGGAACGGTTTAGGAGGGCGTTTCGGGCCGCC
TTCGACGCCGGCTTTAGAGAGTGGGCGAGGAAATTGGAGAATGAAGGAAC
GAAGCTGCAGAGCGGTAGGCAAGGGGGGGGATATCATCTGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig604:135111..135553-

>mRNA_P-littoralis_Contig604.35.1 ID=mRNA_P-littoralis_Contig604.35.1|Name=mRNA_P-littoralis_Contig604.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig604:135111..135553- (Pylaiella littoralis U1_48)
ATGCTTGAGAGCGGGGCGAGGGCGGGCGTAGGAGGTCGTGGAATTAGACC
GCCGTGTGGAGGCCCTGTTCGGGCTCACAGGGTTCTGGTGACTTACGTGG
TGGAAGGGAACACAGCAGTGGCGGGGCGCCGCTTCTGTGCGTTGGAGGAG
AATTTGACCCGGACGACGGTCAAGAATCGGAAATTCTTCTCGCCAGACCG
GCAGCTGGTGGCAACGGAACGGTTTAGGAGGGCGTTTCGGGCCGCCTTCG
ACGCCGGCTTTAGAGAGTGGGCGAGGAAATTGGAGAATGAAGGAACGAAG
CTGCAGAGCGGTAGGCAAGGGGGGGGATATCATCTGCGG
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