mRNA_P-littoralis_Contig604.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig604.2.1
Unique NamemRNA_P-littoralis_Contig604.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig604.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig604contigP-littoralis_Contig604:6257..6972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size691
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791258.9355252-CDS-P-littoralis_Contig604:6256..65941680791258.9355252-CDS-P-littoralis_Contig604:6256..6594Pylaiella littoralis U1_48CDSP-littoralis_Contig604 6257..6594 +
1680791258.9451582-CDS-P-littoralis_Contig604:6619..66441680791258.9451582-CDS-P-littoralis_Contig604:6619..6644Pylaiella littoralis U1_48CDSP-littoralis_Contig604 6620..6644 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791258.958921-UTR-P-littoralis_Contig604:6644..69721680791258.958921-UTR-P-littoralis_Contig604:6644..6972Pylaiella littoralis U1_48UTRP-littoralis_Contig604 6645..6972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig604.2.1prot_P-littoralis_Contig604.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig604 6257..6644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig604.2.1

>prot_P-littoralis_Contig604.2.1 ID=prot_P-littoralis_Contig604.2.1|Name=mRNA_P-littoralis_Contig604.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
QPPFLRRHGTATPPRSTRHRREPTRYALPKLQGSEWETEKREERDDERQR
VGKRAEERERAGRGRERSAIYRGSTHTRERAEYSSLRDVEEGRVLQGWGR
KPHICRVASSSTYHQTSPLS*
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mRNA from alignment at P-littoralis_Contig604:6257..6972+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig604.2.1 ID=mRNA_P-littoralis_Contig604.2.1|Name=mRNA_P-littoralis_Contig604.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=716bp|location=Sequence derived from alignment at P-littoralis_Contig604:6257..6972+ (Pylaiella littoralis U1_48)
CAACCGCCTTTTCTCCGCCGCCACGGCACAGCGACACCGCCACGAAGCAC
GAGACACAGACGCGAGCCAACAAGGTACGCGCTCCCAAAGCTACAGGGTA
GTGAGTGGGAGACAGAGAAGAGAGAGGAGAGAGACGATGAGAGGCAGAGA
GTAGGAAAGAGGGCCGAAGAGAGAGAGAGGGCAGGGAGAGGAAGAGAGAG
GAGTGCAATATACCGTGGTAGCACACACACCCGAGAGAGAGCAGAATACA
GCTCGCTGAGAGATGTAGAGGAGGGCCGCGTGCTGCAAGGTTGGGGTCGC
AAGCCTCACATTTGCAGAGTGGCCAGCAGCAGCACGTAGCGATGCGCATG
GTGCACTTGCCAGCCACCAAACGTCTCCACTATCATAGCGCACGACATCC
GCTCCTCGCAAGCTACATCTGATACGTGTGATACCAGGTTAGGTTGCACC
ATGTACAGTATGTATGTTAAAGGACGGGCTGAACCGCCTGTTACTACCGT
ATATACGAGTAGAGGTGGTAGTGGTCTTATATTTTTGAGGAAGAGCGGAG
GAATGTGAGCCTCACTACACTGTCTGTACTGTCGACTTCATTGCTCTTAG
CCCCCTATACTACGAGTATACACCGCTAGTCTACCTCTTGCTTGTATTTG
TGCGTTTGAATAGCACCGCCGGCGGGGTTTGCCTCCGGTGAGAGAAAGAG
CAAGCAAGCGCCTGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig604:6257..6972+

>mRNA_P-littoralis_Contig604.2.1 ID=mRNA_P-littoralis_Contig604.2.1|Name=mRNA_P-littoralis_Contig604.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig604:6257..6972+ (Pylaiella littoralis U1_48)
CAACCGCCTTTTCTCCGCCGCCACGGCACAGCGACACCGCCACGAAGCAC
GAGACACAGACGCGAGCCAACAAGGTACGCGCTCCCAAAGCTACAGGGTA
GTGAGTGGGAGACAGAGAAGAGAGAGGAGAGAGACGATGAGAGGCAGAGA
GTAGGAAAGAGGGCCGAAGAGAGAGAGAGGGCAGGGAGAGGAAGAGAGAG
GAGTGCAATATACCGTGGTAGCACACACACCCGAGAGAGAGCAGAATACA
GCTCGCTGAGAGATGTAGAGGAGGGCCGCGTGCTGCAAGGTTGGGGTCGC
AAGCCTCACATTTGCAGAGTGGCCAGCAGCAGCACGTACCACCAAACGTC
TCCACTATCATAG
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