mRNA_P-littoralis_Contig601.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig601.31.1
Unique NamemRNA_P-littoralis_Contig601.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5JDU7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU7_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 6.440e-18
Identity = 70/227 (30.84%), Postives = 92/227 (40.53%), Query Frame = 3 
Query:    6 LFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVRCK---------------------------------------------------------------------------------------------KVDGVKPSEGSAKTGKGRPTLTADGR-LGASF*SSAPAPSRSGESPARLALRIILEDGKQWRPEY 404
            +FG+++P    I+W VIDAINKTPAVG F F  TEE C + A ++K  ST+G F  VVAAVDGLF++ K                                                                                             KV  ++ +E  + +G+ R  L A  R L A + +  PAPSRSGE+PAR A+R  LE  KQWRP+Y
Sbjct:    1 MFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNANRFKEKSTDGIFSWVVAAVDGLFIKAKGSCAKDTANVIANYSGSKSAYGINVQAMCTADYRMTRVSACSYGLGLQFKSRSKLHLSAVVQLQRIAQSRSQSETSLSITRKPCYLHDFLQDEKVAQIQLAEEDSCSGRNRLALCATQRTLPAGWQTEQPAPSRSGETPARAAIRTALESKKQWRPDY 227
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BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5KUP3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.460e-14
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 3 
Query:    3 LLFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVRCK 212
            L+FG+++P    I+W VIDAINKTPAVG F F  TEE C + A ++K  ST+G F  VVAAVDGLF++ K
Sbjct:  102 LMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNANRFKKKSTDGIFSWVVAAVDGLFIKAK 171
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BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5L4Q5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.640e-14
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 3 
Query:    3 LLFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVRCK 212
            L+FG+++P    I+W VIDAINKTPAVG F F  TEE C + A +++G ST+G F  VVAAVDGLF++ K
Sbjct:   57 LMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNANRFEGKSTDGIFCWVVAAVDGLFIKAK 126
[Close]
BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5JRW0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.800e-14
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 3 
Query:    6 LFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVRCK 212
            +FG+++P    I+W VIDAINK+PAVG F F  TEE C + A ++K  ST+G F  VVAAVDGLF++ K
Sbjct:    1 MFGLSVPTTYQILWSVIDAINKSPAVGAFDFPLTEEGCMRNANRFKEKSTDGIFSWVVAAVDGLFIKAK 69
[Close]
BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5K8X4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.860e-14
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 3 
Query:    3 LLFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVRCK 212
            L+FG+++P    I+W VIDAINKTPAVG F F  TEE C + A ++K  ST+G F  VVAAVDGLF++ K
Sbjct:  121 LMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNANRFKEKSTDGIFSWVVAAVDGLFIKTK 190
[Close]
BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 8.790e-14
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:    3 LLFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVR 206
            LLFG+A   V  +MWQV+DAIN TP VGPF+F QT EEC + A +W+  ST GAF   VAA DGLFV+
Sbjct:  145 LLFGIAKESVFNVMWQVVDAINNTPTVGPFFFPQTVEECTRQAREWEVKSTGGAFAGCVAAGDGLFVK 212
[Close]
BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5KEZ6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.170e-13
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 3 
Query:    6 LFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVR 206
            LFGV+   V  I+WQV+DAIN T  VGPF+F Q+E+EC + A +W+  ST GAF  VVAA DGLFV+
Sbjct:  152 LFGVSKETVFSILWQVVDAINSTAEVGPFFFPQSEDECTRQAAEWEEKSTGGAFQGVVAAGDGLFVK 218
[Close]
BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5K9K7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.520e-13
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 3 
Query:    6 LFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVRCK 212
            +FG+++ +   I+W+VIDAIN TPAVG F F  TEE C + A ++K  ST+G F  VVAAVDGLF++ +
Sbjct:    6 MFGLSVAVTYQILWEVIDAINNTPAVGAFDFPLTEEGCMRNANRFKDKSTDGIFSWVVAAVDGLFIKAE 74
[Close]
BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5JXA4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.710e-13
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 3 
Query:    6 LFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVR 206
            LFGV+   V  I+WQV+DAIN T  VGPF+F Q+E+EC + A +W+  ST GAF  VVAA DGLFV+
Sbjct:  150 LFGVSKETVFSILWQVVDAINSTAEVGPFFFPQSEDECTRQAAEWEEKSTGGAFQGVVAAGDGLFVK 216
[Close]
BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Match: A0A6H5KPH6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.790e-13
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 3 
Query:    6 LFGVAIPIVLLIMWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVDGLFVR 206
            LFGV+   V  I+WQV+DAIN T  VGPF+F Q+E+EC + A +W+  ST GAF  VVAA DGLFV+
Sbjct:  117 LFGVSKETVFSILWQVVDAINSTAEVGPFFFPQSEDECTRQAAEWEEKSTGGAFQGVVAAGDGLFVK 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig601.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDU7_9PHAE6.440e-1830.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KUP3_9PHAE4.460e-1457.14DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L4Q5_9PHAE4.640e-1457.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JRW0_9PHAE4.800e-1455.07DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K8X4_9PHAE4.860e-1457.14DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JDE6_9PHAE8.790e-1460.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KEZ6_9PHAE1.170e-1358.21DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K9K7_9PHAE1.520e-1352.17DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JXA4_9PHAE2.710e-1358.21DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KPH6_9PHAE2.790e-1358.21DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig601contigP-littoralis_Contig601:111627..113796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1259
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791256.040421-UTR-P-littoralis_Contig601:111626..1125771680791256.040421-UTR-P-littoralis_Contig601:111626..112577Pylaiella littoralis U1_48UTRP-littoralis_Contig601 111627..112577 -
1680791256.0717425-UTR-P-littoralis_Contig601:113755..1137961680791256.0717425-UTR-P-littoralis_Contig601:113755..113796Pylaiella littoralis U1_48UTRP-littoralis_Contig601 113756..113796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791256.0502331-CDS-P-littoralis_Contig601:112577..1127421680791256.0502331-CDS-P-littoralis_Contig601:112577..112742Pylaiella littoralis U1_48CDSP-littoralis_Contig601 112578..112742 -
1680791256.0593498-CDS-P-littoralis_Contig601:113653..1137551680791256.0593498-CDS-P-littoralis_Contig601:113653..113755Pylaiella littoralis U1_48CDSP-littoralis_Contig601 113654..113755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig601.31.1prot_P-littoralis_Contig601.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig601 112578..113755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig601.31.1

>prot_P-littoralis_Contig601.31.1 ID=prot_P-littoralis_Contig601.31.1|Name=mRNA_P-littoralis_Contig601.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MWQVIDAINKTPAVGPFYFQQTEEECAQAAGKWKGLSTNGAFDHVVAAVD
GLFVRCKKVDGVKPSEGSAKTGKGRPTLTADGRLGASF*
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mRNA from alignment at P-littoralis_Contig601:111627..113796-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig601.31.1 ID=mRNA_P-littoralis_Contig601.31.1|Name=mRNA_P-littoralis_Contig601.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2170bp|location=Sequence derived from alignment at P-littoralis_Contig601:111627..113796- (Pylaiella littoralis U1_48)
CGCTGCTCTTTGGCGTTGCAATCCCGATCGTGTTGTTGATCATGTGGCAA
GTGATCGATGCCATAAACAAGACGCCGGCAGTGGGTCCCTTTTACTTCCA
GCAAACGGAGGAGGAGTGCGCTCAGGCTGCAGGCAAATGGAAGGTGTGTC
TGCAAATGAGGTGTTGTTGTTCCTTTATTGCGCGTGTCAAATTGTCATGA
CATGGGTACGGGTGCCGACGATATTTCTTGGTCTGTTCTCAGCATACCAT
AAAACCCTTTGTTTCCCCCCACCATTTATGATTCCCCCCCATCTACTTTT
CAGCCGAAAAGCATGGAAACTTTGATTTGCCCCCGGGAAGACGCAGAAAA
TAAGACCCCCCCCCCCCCCGGCATCCCGTGGATTTTTACCTTTGGTAGTT
GTTTTTCGAAGACTTCCACCCGGGGTTGCTTGATTTTTCAACACTTTGTT
GTGCTTACGGTATCGTTGCACATGGTTGAAGGGGGTGACACGTCTTTGTG
TTCGGCCCTTGCACGGCATCCCCACGTGCTGTCCTCCTTCCTTTTCCTCC
TGAATACTTGCTCGTATATCTTGTCCATGGCGGATTCAGCAAACTCTAGA
GAGAGAGAGAGGGCGCGCGTGTGTGTGTCCGTCTGCTGTGTGCGTGCTTT
ATGTATCAATTTGTTTTTTGTGCCTTCCCCCCAGGGAAGAGTATCCGCCG
GGGAAGATTCGAAAAATAAATGTCCCCCCCTCCCCCGTCAGTTTACCCCC
GAGGGGTCGTATTTAAAAAAAAAAGATGCCCTCTCCGGGAGTAAAAGAAA
GGTTTTTGCGGTACTCATTTTGCGGTACTCATCTAACATTGAGGTTCCCG
AACTCAAACTAAACCGATCTTGCGATGCTAGTTTATGTTTTGTTACTGTT
TGTTTCATATGTTCAGTCATACGACTCCCCCCTTAAAGTTGTAAACACAC
TTTCCTGACCCCGATCCCGACCCCTGATCCCCACCCCGGCGCGCGCTCCC
TATCACCCACTACCCGCCTTTCTTTTGCTTCGTATCCCACCACCCACCAC
GCAGGGACTGAGCACCAATGGCGCGTTCGATCATGTGGTGGCCGCTGTGG
ATGGTTTGTTCGTTAGGTGCAAGAAGGTCGATGGAGTGAAGCCTTCTGAG
GGGTCCGCGAAGACGGGCAAGGGGCGGCCGACCCTCACCGCTGACGGCAG
GCTAGGGGCGTCCTTTTAGAGCAGCGCGCCGGCACCGTCCAGAAGCGGAG
AGTCGCCGGCGCGGCTTGCTCTGCGGATAATTTTGGAGGACGGCAAGCAA
TGGCGCCCGGAGTACAACAAGCTGCGCAACTCGTAAATACTGCACGGGTC
GTATGGTGGCTGGCGTTTGCGATGTTTGGTTTTGGTAGCGGGTAAAGGGC
AGCGGAGCTGGCAGCAGATAGAGGGGGCGGAGCTTGGTTCTGCATGCACG
GGGGGGTAAGGGCATCGTCTCGTGTGTTGTCGTGAATGCTTGGTTGAGCG
GATTTGCCCCCCGCTGTAGTTTTTCCTTCGGGATATAGGACAGATTCATT
TGGTACTAAACCTTGCATGGGTCTTGATTCGATGTCTTTACGCTAAGTTG
ATTTGTGCGATTGCCTTTACCTCCGTGAGGTAGGAGCTGTGGTCTCTACC
TTTTTTTCGATAGCCTGATATCGGTTCGAGCGCATGCTTTTTTTTTTGTA
TTTTGTCTGGTACGATGTATGTAGTTGTTCGCGTTTGTGTGACCCCCTCT
CGAGATCTGTGTTATTTTGATCGGATCAATGTTATCTTCCGTGCTCAGTC
AAGTGTAGTTAGAACTGTCGTTCTTAATACTACTCTGTAATGTGATGTGA
CGATCACACAAGGTGTATGTGCTGTTCATGTGTCTTTTTTTTCGAGTTGA
TATCACTCATGCAGCCACCTCGGCGGTGATTGAGTAGTTTTTTAAAAAAT
ACATGGACGAGTCGTGCCGTTCCGAAAATTACAGGTGGTTTTCTGTTTTG
TGTATGTAGCATTCACCTGGAGGGGTCAGGGCAAGTTCGCAATCAAAACA
AAGGATCAACTAGAAACGTGGGCCCCTGGATACACGTAAAACTTGAAATG
CGATTGGTTTCATGTTCAGGAGGACGGGTTGACTACTGCTGTCCATCAGG
CATAAATAAAAAGAGAAACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig601:111627..113796-

>mRNA_P-littoralis_Contig601.31.1 ID=mRNA_P-littoralis_Contig601.31.1|Name=mRNA_P-littoralis_Contig601.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig601:111627..113796- (Pylaiella littoralis U1_48)
ATGTGGCAAGTGATCGATGCCATAAACAAGACGCCGGCAGTGGGTCCCTT
TTACTTCCAGCAAACGGAGGAGGAGTGCGCTCAGGCTGCAGGCAAATGGA
AGGGACTGAGCACCAATGGCGCGTTCGATCATGTGGTGGCCGCTGTGGAT
GGTTTGTTCGTTAGGTGCAAGAAGGTCGATGGAGTGAAGCCTTCTGAGGG
GTCCGCGAAGACGGGCAAGGGGCGGCCGACCCTCACCGCTGACGGCAGGC
TAGGGGCGTCCTTTTAG
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