mRNA_P-littoralis_Contig60.145.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.145.1
Unique NamemRNA_P-littoralis_Contig60.145.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:604719..606291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size525
Hectar predicted targeting categorysignal peptide
Exons2
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791252.6002927-UTR-P-littoralis_Contig60:604718..6048321680791252.6002927-UTR-P-littoralis_Contig60:604718..604832Pylaiella littoralis U1_48UTRP-littoralis_Contig60 604719..604832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791252.6102662-CDS-P-littoralis_Contig60:604832..6049671680791252.6102662-CDS-P-littoralis_Contig60:604832..604967Pylaiella littoralis U1_48CDSP-littoralis_Contig60 604833..604967 +
1680791252.619411-CDS-P-littoralis_Contig60:606015..6062911680791252.619411-CDS-P-littoralis_Contig60:606015..606291Pylaiella littoralis U1_48CDSP-littoralis_Contig60 606016..606291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.145.1prot_P-littoralis_Contig60.145.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 604833..606291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.145.1

>prot_P-littoralis_Contig60.145.1 ID=prot_P-littoralis_Contig60.145.1|Name=mRNA_P-littoralis_Contig60.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MRAWRAKGRTVVGALVVAAAVSGRGEQALGFLLSPGDSGDAPTTRASRLL
LHASRGDPSSSSRPSRIPPRFRSGYARSSPPPSNNIGGAEFDSSGGGGGG
RNLGARRASASSSPQPAAVRSAVSDAATGGFGGSEKP
back to top

mRNA from alignment at P-littoralis_Contig60:604719..606291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.145.1 ID=mRNA_P-littoralis_Contig60.145.1|Name=mRNA_P-littoralis_Contig60.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1573bp|location=Sequence derived from alignment at P-littoralis_Contig60:604719..606291+ (Pylaiella littoralis U1_48)
GGAACACGGTGGCATCGTCTGGACGTCTGGACCCTCTCTCGCCAACGTTC
TCTCTTCCCAATACAACCTAACTGCACACCGTCATAGCATCGATTCCAAG
ACCACTGCTTTAGCATGAGGGCTTGGCGAGCTAAAGGGAGAACCGTGGTA
GGGGCGCTCGTCGTAGCTGCAGCTGTGTCGGGGCGGGGCGAACAGGCTCT
TGGTTTTCTTCTATCGCCGGGCGACAGCGGGGACGCCCCAACAACTAGGG
TAAGACGAAAAAGGCAACACACCTTCTCGAGTTACTGCTGTAGCGCACAG
CTACGTACTTTCTTTTGTATTTTCTGCACGAAGACATGCCTGATGCATTC
TTCAACAACAAGGGCATCATAGGTTGGAGGTCTTCTTGTGTGCCACGCGA
TACATTATGCGTGGTGAGGATTTGGGACGGTGCTCATAAATCTGCATCGA
TTATTACAATCGCAGCAATACATGGCGGTAAGCATCGATTGAGATTCAGA
CATGAAGCTTGGCGAGTGACATTTTAACAACAGGTATACTCGTAAGATCT
GCTTCGCGTAAATCACGCACATGCACACTCGTGTAATAAGATTATTATCC
CCCAAGACCTGTCTCCAGCAGCTCGCTTCGCCCACGGTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTT
GCCATCCCTTTAATTGGACGCCACTCTGCGTGTGCGTAAAGGAAACAAAC
ATTTATAATGAAGAAACACCTCAAACGTGCTATAATACGGGACTGTGGAG
TGTTTTTGTCAAACTTTGCATTCCGCCGAAGCTATGATATGATACCTGGA
ACACCGGTCACGTGTAAGCACGAGGCCGAACTACTCGTCAAAGGCTACTG
CCGCGTACACGAACATATGCATGGTTGCGTCAAAGTTGGAGTTACGTTCA
GTCGTCGAAGACTGCTGCCGTGTGCAGGGTACGCAGATTCAATACGGGTG
ACGATGTTGAATGCGATGTTGAAGAATACAAAAACATGAGCCTGTTGGTC
ATCTACAGCAGCTCAGCTACCTCTCGGGGCGCGTGTACAGGAGTGTTACC
ACCTCCATGTTACTTCGAAGTACATTTTATTGTATCAAAAACATTTGAGA
CACAATAACGTTTGAGACAAAAGGAATCTCCAGATGTAGATTACACTGCC
CGCGACCCTGCAGTGCACGACCACAGCTTTTCGCGCGTGCCGAGGACATC
TTGAAGTAACGCTGTTGTGAAACACTGCCCGTCTGGTATCGCAGCAGGCT
TCGCGCCTACTACTGCATGCCTCTCGCGGCGATCCATCGTCATCGTCAAG
ACCCTCAAGAATCCCCCCCAGGTTCCGGAGTGGCTACGCACGTAGCAGCC
CGCCCCCAAGCAACAACATCGGTGGCGCGGAATTTGACAGCAGCGGCGGG
GGCGGCGGGGGCAGAAACCTAGGTGCAAGGAGGGCTTCAGCATCATCATC
GCCGCAGCCCGCCGCGGTCCGCTCGGCGGTGAGCGACGCGGCGACTGGGG
GCTTCGGCGGTAGCGAAAAACCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig60:604719..606291+

>mRNA_P-littoralis_Contig60.145.1 ID=mRNA_P-littoralis_Contig60.145.1|Name=mRNA_P-littoralis_Contig60.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig60:604719..606291+ (Pylaiella littoralis U1_48)
ATGAGGGCTTGGCGAGCTAAAGGGAGAACCGTGGTAGGGGCGCTCGTCGT
AGCTGCAGCTGTGTCGGGGCGGGGCGAACAGGCTCTTGGTTTTCTTCTAT
CGCCGGGCGACAGCGGGGACGCCCCAACAACTAGGGCTTCGCGCCTACTA
CTGCATGCCTCTCGCGGCGATCCATCGTCATCGTCAAGACCCTCAAGAAT
CCCCCCCAGGTTCCGGAGTGGCTACGCACGTAGCAGCCCGCCCCCAAGCA
ACAACATCGGTGGCGCGGAATTTGACAGCAGCGGCGGGGGCGGCGGGGGC
AGAAACCTAGGTGCAAGGAGGGCTTCAGCATCATCATCGCCGCAGCCCGC
CGCGGTCCGCTCGGCGGTGAGCGACGCGGCGACTGGGGGCTTCGGCGGTA
GCGAAAAACCG
back to top