mRNA_P-littoralis_Contig60.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.13.1
Unique NamemRNA_P-littoralis_Contig60.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig60.13.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 8.820e-41
Identity = 75/102 (73.53%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:  261 MVDRHQPTCCAGMQAIGTLLGTMFGFVSAALLTPIHGGDRGNRMPAAPGVIVGSSIGVLAAHSAGEENQPFRQLACLLVLSVGAASATTAVCTWLVGDILKN 566
            M D  QPTC AGMQA+GTLLGTMFGFVSAALLTPI GG+R + +PAAPGVI+GSS+GVLAA+SAGE  QP RQL  LL+LSVGAA+ TTA C+WL GD+L+N
Sbjct:    1 MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQN 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H7_ECTSI8.820e-4173.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:41383..48402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size797
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791246.4204226-UTR-P-littoralis_Contig60:41382..414361680791246.4204226-UTR-P-littoralis_Contig60:41382..41436Pylaiella littoralis U1_48UTRP-littoralis_Contig60 41383..41436 -
1680791246.4684532-UTR-P-littoralis_Contig60:48142..484021680791246.4684532-UTR-P-littoralis_Contig60:48142..48402Pylaiella littoralis U1_48UTRP-littoralis_Contig60 48143..48402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791246.4345162-CDS-P-littoralis_Contig60:41436..417691680791246.4345162-CDS-P-littoralis_Contig60:41436..41769Pylaiella littoralis U1_48CDSP-littoralis_Contig60 41437..41769 -
1680791246.4445639-CDS-P-littoralis_Contig60:42173..422811680791246.4445639-CDS-P-littoralis_Contig60:42173..42281Pylaiella littoralis U1_48CDSP-littoralis_Contig60 42174..42281 -
1680791246.4545326-CDS-P-littoralis_Contig60:48100..481421680791246.4545326-CDS-P-littoralis_Contig60:48100..48142Pylaiella littoralis U1_48CDSP-littoralis_Contig60 48101..48142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.13.1prot_P-littoralis_Contig60.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 41437..48142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.13.1

>prot_P-littoralis_Contig60.13.1 ID=prot_P-littoralis_Contig60.13.1|Name=mRNA_P-littoralis_Contig60.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
MVDRHQPTCCAGMQAIGTLLGTMFGFVSAALLTPIHGGDRGNRMPAAPGV
IVGSSIGVLAAHSAGEENQPFRQLACLLVLSVGAASATTAVCTWLVGDIL
KNVSVACGMVGALFTEVRTVFCAMHQKLRDGLLAMRSRAVKEFCSTLLYT
AERDTNLAFE*
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mRNA from alignment at P-littoralis_Contig60:41383..48402-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.13.1 ID=mRNA_P-littoralis_Contig60.13.1|Name=mRNA_P-littoralis_Contig60.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7020bp|location=Sequence derived from alignment at P-littoralis_Contig60:41383..48402- (Pylaiella littoralis U1_48)
CTAGGCTCAGCGATCTCTGTACATAGGCGAGTGTGCGTCTATGCTCACCG
TTGCGCGCATCGCGTTTGCACGGGATCTGGCAGCCAGCCACCATAAGCTT
TCACCGGGGAATGCCTCCTCCGGTGGATCGCGTTGAAGATTGAACAACTT
CAATTTCAGGAAATGCGGGGGAACCTCGGCTCAAATCTGGACTAAACTAA
GCACCACCTTCTTGTCTGGGACAACTCAGTGAACCGTGGAGCCTACACAA
CGCTGGGAAAATGGTCGACCGACATCAGCCAACGTGCTGCGCAGGAATGC
AGGTGAAATAATAAACCCCAGCGTCTACCAAATCGCCTGGTGTTGGCGTA
CAGCAGTACTTCGAAGTACGAAGTACGAAGTATATTATGTGAACACTCGA
GCTTTGCCAGGTGTGCACACGTGTGATGGTCCCTACAGAAAATATCGCGT
TTTTTTTTTTATGCAGGCTGGATTGCCCAAGAGGCTAACTCTTGTTCGTT
CGGGCCCCTCTCCATCATTTTTACGAGTTTAGGCTTGAAATTTTGGTGGT
TGCTCCTATATAGCAACGAGGAAAGGGCAGACCCAACGTTTTTTGGGAAA
CAGTAATTTGCGATTTCCTACGCGTTTTTTACGAGTTTTAATCTGAAATT
TTCAGGGCTCTACATGGTGCCGAAGGCACCACGTCCCATCCCATTGTGAT
GGAAAGCCCGCCGCAGGCGGAATTTTTTTAGGTGTCACGTGCGATGGGAT
GGTGTTTGCGCCCACTTCTGATGGTAGTACGATGAGATGGGATGGCTGGT
ACATTGTAGTGATGGGATGGGATGGTATGAGGCCAAGAGGCTGATGGGAT
GGGATGGTAAAGATGCGTTAGGGTGATGGGATGGGATGGTAACTGGTGGG
ACGGTTGGTGTGATGGGATGGGGGAGCTTTTTGGCTGGCGTGTGGCGGGA
ACATGGTAACGAAAAGATGAACTCTGATCCCCGGAGGTGTTTCCAGTGTC
AGCGGTACTCTCCCGCTTCAATGATAAAAATTATCGGCTGGAAATTAGAA
AAAGAATCAAAAAGAGAAAAATCAATAATCGGGAAATTATACGAAAAGAA
ATTAGGTTGCGACTTCAACAGAACAAACTAACCAAAACCACACCCCACGG
CATAACTAACTCCAGGCGAAGTTCTACCTCTAGTAACTGTTCCTAGGCAC
GTTGTTCTTTGAACGTTCTGGTCACTACGCCAACACCAAATACAACAACC
GCAGAGACAAAAGCAGAAACGTCACAGGACAGCAACGCTACTTGTTTAGA
GGATGATGGTGGTACCCTCCCTGGCTTGCTGGGCGGCAGCCGATGCCTTT
GCGTTTGCGTCGTGCTTTGCCTTCAATGCGGCCAACTCTCGCTTACTTTC
GCAAAGCCGGGGATGAGGCGCCCGCTGCCGGCGGTTGGGGTACTAGCCAT
GCCTTATGGTTCTGTTTTGTGGTTTGTGTTTTTGTGTTTTTGTGTTTTTG
TGTTTTGTTTTGCCAGATTGTGTGTGTGTGTGTGAGCCGGACCCCTACCC
CTCCATCCCAAACATTTTTCTCCAATTCGACACACACCTCCTTAGAAAGT
ATGTTGTGTTGAGTGGGGGGGGGGGGAGGAGGTACCTCTATGTGGGTGGA
CCCTGCTGTCGTAGCTGAGATGGGCTGGGTCGGTGGTCTAAAACCAGCAA
TTCACATATGATGGTGTCTCCCACTGGTGTGGTGGTAAATATAATGGGAT
GGGAAGCGTTCAAACACCAGCACCACTTTCCTGATGGTGCCTCAGACTGG
CGTGGTGGTGACGGGATGGTATCTGGTGATGGGTCCATAATTCCCGACCC
GATCCCATCTCATCACCTTACCATCCCATCAAGTGATGGTATACCATCCC
ATCGCAACACCACGTAGAGCCCTGGAATTTTTGACACGAGGTTTGAAGCC
CTGGCTGAAGTATAACCTTCAGGCTACATCTTATGTGTCAAAAACGCCAT
CATTCCTTTCGGGCCGTTCAAATATTAACGTTTCCAACAGGCTCTGTTGA
AGGACCCGATATTATGTGTCAAAACCGAACAGCAGGTGGTTTTATTTTTT
TTAATAACTTCCGAAAAAAGTCTCTCCTGTTCGGCTGGGGCGGTTCGGAT
GGTAGCCAACTCGACTCTCACTTTTTTGCACTGCTGTAACCGGTTCGCTC
TTTCGTCCACCACTCTCGAACGAATGAAGCCACAGTAGTAATGGTAAGGA
CATGCCTCGCGAGCTGGGTGCATGGTCCTTCTTCTCCCGTAGTTATATAA
CACCGCGAGGTATCGATAGACTGGCGAAATAAGGTTGCAGGTATCACCGA
TGAAGTGTGAGGAAATGAAAAAAAACCGACGCAGCTGACCACCAGCAGCA
GGTGGTGTGGTGATTTCCTCTTTTTTCCACTGGCCATCAATTCCTGCAAT
CCTACGCCAGCCTGTCGATGCCTCGCTGCTTCAGAGGACCACCGGAGGAG
AGAGACCATGTTCACTACTCGGGAGGCATGGCTTCGTCATTGCTGTGGCT
TCATTCGTTCGAGAGCAATCAACAAAAAACCAAACTGGTGTGGCGGCAAA
AAAAAAACTGCTGCTGGTTGAAGAATTCAGAGGACAGCAGCACCACAGCT
AGCTGCCAGCTCTCGTCCGATCCATTTTGGTTTTTGGTCCATCGCTCTCG
AATGAAAGAACCCACAGCAATACTAAAGCCATCGGTCGTGAGGTGTATGT
GTGGTCCTTCTCCTGCGTCGGTCATCAGAGGCCGTGAGGAATCGATGGGC
TACCAAAACAAAGTTTCAATGTCATGTCATCATGCAAGGCTGACCGTAAC
TTGGGTTGTTCAAACTCCTTGACCAAAAAAAATAACAGGTTTCAGATAGC
TGCAGGCTATCAGAAAAATGCTTTTTCTGATCGTTTGGGGCTATCGGAAA
AATTTATTCGAAAAGCCGCTGTCTAAAATGTCTGTTTCTGATCACATAAG
ATGCTCCGTTTTGGGCCAATGTTCAAAACAGCCAAATAAAATAAAAATAT
ATGAACTGTTCTGACACATAAGATGTAGCCTCACTGCTAAATTTGATTTT
TGTTTTTTTTAAGATGGTTTCATCGCATTACAGGTACTCGCCGATATACT
AATATCAACATAACTCACCAAAAAAATAAAAAATAAAAAATCAGCAGTGG
CGGGTGCATTTGAAATACTATCACGAATTACGTGTCAAAATTTCAGGCCA
AAACCCTGAAAAACCGCGTGGGAATTCCCGTTCCACCGCGACATCACCGT
TTTGGCCAATCCAGCCTGCAGCGACAACATTTGTGATTGCACGGAGCCCC
CAACCCCCGATTTTCTCGTGACAAGTCCCAATACATCGGCTGGTTCATCG
GCTGTAGCACTGACCCCTAATTTCGCCAACCTTTTTTGGGTAGTCCATCC
ATCAAGCTACACACCCTCCGAGTTTGAGCCCATTTGGTCCATGCCCCAGC
TGGCAACTCTGGTTTAATTTTTTTTTGCGATGTAAATGTTGATATTTTGG
GGATATTTTCGGAGGTAGACACATCATCGTTGTTGGGTGAAAAATTTCAA
CGAAGTAAAAACGGAGTTTAGAGAAAGGTTTGGGTCCATTTTAGGCAACT
TTTGCAGGCCCATCGTCAGCGCCGTAGTGTTGATCCTCAATTTCGCCAAC
GTGTTTGGGGTAGTGTATCCACCAAGCTATACACCCTCCAAGTTTCAGCC
AATTTGGTCAATTCACGAGATGGCAACCCTGGCGTGAAGTTTGCCTCCCG
AGGCCTAAAAACGAGCTCTCTGGAGGCGATTTTTTTTTGAACAAAACGGC
TTGCTTTCAGTTGCGATGGCGTAGCATTTCTGCAGTTCGAAACAAAACCA
TGGCATATAAACTATCGGAGGAGGTAGAATACACCTCTCCTGAGGTCTCC
TGTTGGTGTCGTAGCAAGCCGCGGTCTGTGCAAGGAGCACCAGCGGTGAC
AAAGGTCATGACCCCGAATGGTATTGGCAGCACAAATTGATTTCAAGTTG
AGGAGGGGCTCCGATGATGTGTTGATTGCACCGTTGCACCACTCACAAAC
TTTGTCGCTATAAAAAAAAAAAAAGTGCCAAACCATCACATGTGGTGTAT
GTCATGTTCATCAGCGATGACTTGTAAGACCGTTTCTTACGGCTCCGTTA
TTTGGTCCTGTGTTTTTTCTCCTGAGGTACCCCCCCCCCCCCAATAACAG
AGAGCCCAAACGGTTGAAAAATCTACTTCTTGAGCACAACAGGAGACAGC
ACCAAGCAGAACTCGACCCCTGGGACACCAATCGAGACTATAACTGTTGG
ACGGTACGCTCTAGTGTTCTCAGGTTGGCCACAGGAAATTTTGGTGGGTG
TGGGCTTTGGCTGTGGCGAGGTTTCGGCGGCGGACTGGGTTGAGGTAGGA
AAATCCGGTGGAAAAAAACGCTGTCCGAGCCTGTTTTTTGGCCGGAAAAA
CAGGAGCCAAGACCGTTATTTCGTTTCATCTGTTTTTCCATCTCCAACAC
ACACCGCCGCCAAAATCTCGCCACAGCCCGAACCCACTGCCGCCAAATTT
CCTGTGGCCAACTTGAGAACATAGGAGCACACGCTCCATCAGGTTTGATC
GGCATCTGTGTCCTAGGGGTCGAGTTCTGGTTGGTGCTGTCGCATGATGT
GTGCAACAAGGCTGTTTGCGGATGGGGGGGTATGGGGGTTCTCTGGTTGG
ATTCTTGGAGGGGGGTCAAAACGCCAGGCCAAAATAACGTTGACCGTAAG
AAACAGCCTGAACTAAAAAACGATGCATTACCGTAGAGACGGGTATCCCC
CCCCCCCTTTACTGCTGTAGTGTTTTCGTCCCCCCCAACTCAATTTCGGC
CGAAAAGCATGTAACCTTTGATTTTCCCCCGGGGTGAACTTACAGTAATT
TATACAAGAAAAAAAGTTCCCCCCAGGGACAATTTGCCCCCGGGGTAATT
TTTTCCCGATGCGTTCCTCCCGTTTTTTTTTTTCTTCTCGCAATGTTATT
GCGATTTTGGCATTACTGCTGTTGTACTGCGAATGAAAAAGCGCCTGCTT
TTTATGGCCCTTACGCTGTTTTCGTTCGGCACGTACCGTACTTCTACAAA
AGGAAGGGTGTTTGCTGGAGGTTGCATGCATTTGTTCAGATGTCTGCCGT
CCATGCTCGTGGATCTTGTCCACCGTGGGTTCAAACAGAGTTGGAGATAC
CGTACCGGTACTGCTGCTGTAGGGTGTTTGCTGTGCGTGCAGTTGGCATT
GTGGACTTGACCCCCCGGGGGAAAGGTTTACAAATAAAATATTGGGCTTT
CCCTTCCGGGGATATTTACAGGATATTTACTCCCGGGATAATGTCATGGA
AAAAAAAATCTACCCCTAGTTTATTTGCCCCCGGGGGTTGTGTTTTCAGA
AAAAAAAAAAATCCTCTCGCCGGGGGGAAAACACCGGTCTCTACAGTACG
GTGTTTACCCTCTTGGTTTTGAAATTGAATAATTGATTATGCGTATGTAG
CCGGTCGCCCCGGTGGTTCAGTTCGTCATCCACGCAACCTTCTGACACTC
ATGCGTGAGTCCAAATCCCAGTGCAGTAACACGATCTAGGTTTTTTCTCA
CATTTGCGCGTGAAAGTGGAAAGCGATCAGTTCGTGAGTAAAAAAAAGTT
CGATCGAACCATCGACGAGGGAAGGGGATTGCTGTCCCCTTTCTCGCGAT
AAAAGCTCAACCAACCAAGGCAAGCACCACAGAGGGAAATGGAGAAAAAA
AAAAAAACTCCTGTGTTGACTTCCCCCCGTGTGACCCTGGTTGGAGCGTC
TACCTACCTGAAAGGTGTAGAGTGGCGTCCAATGAAAGGGATAACAACAC
ACACATGATACGGTACAAGATGATACGTATCGCCAGTATTTTTTTTTTAT
TATTTTCTTACAAAGACATCAGTGTGTTCGCCTCTCCCTAGACGAGGATC
CAGCAAGATTAGCAAATTTGAAAGTATCAGATTTACATTTTCGGGCAATT
TTCACAAGAACACAATTAAGATATACAACAACAGCTTCAGCCTGCCTCCA
TGTTGTTTCTCCTCTACGCAGGCGATAGGCACCTTACTTGGGACAATGTT
CGGCTTTGTATCTGCAGCCCTCCTGACCCCGATTCATGGCGGCGACAGGG
GGAACAGAATGCCTGCAGCACCTGGCGTGGTGAGTCCTTCCAGACTGTTA
CCACTTCCTCAAGAGGTCTGAGCTATCATACTCCTTCTGTACGGTCATGC
CGGCATCAACAAATCGTCTTCCAACCTCATTCTATATTCGGCGCGTGGCA
GAAACAACTGTTTTTATCAAGGTAGGTGCAAAAACGTGTACCACCCAGGT
CTCTCCCGCTGCAACAAGCCTTGATTCGAGGTTGACGCACCCTGGGAGGT
ACTTCGGAGGTCGTAAGACACAAGACGTAGTCTGTATTTCATAGGCGAGA
GCTCATCGCGAAATCACAACTTACCGCTTTTTTTTTCTGTGTCTCAGCGG
TACTGTACCAAGAGCAAGAAGACGTCCCAATCGTTGACTCACTACTTTCT
GACGTCTGCGTGCTGCCGCGGCGGTTGTTACAGATTGTCGGATCCTCGAT
TGGTGTGCTTGCGGCTCATTCGGCAGGAGAAGAAAACCAACCATTCCGGC
AGCTTGCCTGCCTTTTAGTTTTGAGCGTGGGGGCCGCATCAGCGACAACT
GCAGTATGTACCTGGTTGGTGGGTGATATCCTGAAAAATGTGAGCGTGGC
ATGTGGTATGGTAGGTGCACTATTCACCGAGGTACGCACGGTATTTTGCG
CCATGCACCAAAAACTCCGCGACGGGTTGCTAGCAATGCGCTCACGCGCA
GTGAAAGAGTTTTGTTCTACATTGCTCTACACTGCTGAGCGGGACACGAA
TTTAGCATTTGAGTGACTGCTGTGGTGAATGTGCCCTCGTTTTGATGCAC
ACCCTTCCTGACCCGTGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:41383..48402-

>mRNA_P-littoralis_Contig60.13.1 ID=mRNA_P-littoralis_Contig60.13.1|Name=mRNA_P-littoralis_Contig60.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig60:41383..48402- (Pylaiella littoralis U1_48)
ATGGTCGACCGACATCAGCCAACGTGCTGCGCAGGAATGCAGGCGATAGG
CACCTTACTTGGGACAATGTTCGGCTTTGTATCTGCAGCCCTCCTGACCC
CGATTCATGGCGGCGACAGGGGGAACAGAATGCCTGCAGCACCTGGCGTG
ATTGTCGGATCCTCGATTGGTGTGCTTGCGGCTCATTCGGCAGGAGAAGA
AAACCAACCATTCCGGCAGCTTGCCTGCCTTTTAGTTTTGAGCGTGGGGG
CCGCATCAGCGACAACTGCAGTATGTACCTGGTTGGTGGGTGATATCCTG
AAAAATGTGAGCGTGGCATGTGGTATGGTAGGTGCACTATTCACCGAGGT
ACGCACGGTATTTTGCGCCATGCACCAAAAACTCCGCGACGGGTTGCTAG
CAATGCGCTCACGCGCAGTGAAAGAGTTTTGTTCTACATTGCTCTACACT
GCTGAGCGGGACACGAATTTAGCATTTGAGTGA
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