mRNA_P-littoralis_Contig60.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.78.1
Unique NamemRNA_P-littoralis_Contig60.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:370608..375302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size291
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791245.9548533-CDS-P-littoralis_Contig60:370607..3706911680791245.9548533-CDS-P-littoralis_Contig60:370607..370691Pylaiella littoralis U1_48CDSP-littoralis_Contig60 370608..370691 -
1680791245.9663632-CDS-P-littoralis_Contig60:375095..3752811680791245.9663632-CDS-P-littoralis_Contig60:375095..375281Pylaiella littoralis U1_48CDSP-littoralis_Contig60 375096..375281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791245.9768982-UTR-P-littoralis_Contig60:375281..3753021680791245.9768982-UTR-P-littoralis_Contig60:375281..375302Pylaiella littoralis U1_48UTRP-littoralis_Contig60 375282..375302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.78.1prot_P-littoralis_Contig60.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 370608..375281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.78.1

>prot_P-littoralis_Contig60.78.1 ID=prot_P-littoralis_Contig60.78.1|Name=mRNA_P-littoralis_Contig60.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MLCQENLGACSQRIFGTIHPTTSRIFVSMAPSSPRLTVCYHPSGNSAILS
VAVVVHETSLFDVTLSMLLASKDHPHACQLCLCDVGGYPS
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mRNA from alignment at P-littoralis_Contig60:370608..375302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.78.1 ID=mRNA_P-littoralis_Contig60.78.1|Name=mRNA_P-littoralis_Contig60.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4695bp|location=Sequence derived from alignment at P-littoralis_Contig60:370608..375302- (Pylaiella littoralis U1_48)
CCCGCCGTCCGCGAAGGGGGAATGCTGTGTCAAGAAAACCTAGGAGCGTG
TTCCCAAAGAATTTTTGGAACGATCCACCCGACCACCTCACGCATTTTTG
TGTCGATGGCGCCCTCCAGCCCTCGATTAACGGTGTGTTACCATCCCAGC
GGTAATTCGGCAATCCTTTCGGTCGCAGTTGTGGTGCACGAGACTTCATT
GTTCGATGTAAGTTTGTTTACACGAGCATCCTTCGAAAACGCACCAAAGT
GTATTATTGCTTGATGTACGCACTCACACAGACGACCCCGAAATGGTCTT
GTAGAACCTGATATCATCAGGGGAGAGCTGCAACGGTACGTCATCTGATG
AGTTGTAGAAACACAAGTAGATGTATTACTCTCTCGGTGTTCGTTGCTAT
ACTACCCGCGGGCACGTTAATACGAGGTTTCCACCAGAAAAAATTTACGC
TTTAAAAAAACGTTTTTGCTCAAATCCACGTCTTTCCAATTACGCCGCAA
TTTTAAAACGTTTTTTTGCTCCAAGCACGCGCGTACTTTTTTCTCAGGAA
AGGTATGTTTTTTTTACGTTTTTGCTGTTTTGACCTTTCCGTTCGGATCT
TCCTGGATGGTATCAACCAGCGGGAACAAGAGAGATTATATGAAATATGC
ATTGCTGCTGTATGATATGGACGCACAATACACAGCAGTACTTGTACAAG
TATTGAACAACAACAACAACAACAACAGACCAAGCAAAAGGAAGCACACA
ACGATGCTACCACTGCTGCTGCTGCTGCTGCTGCTGTAGTGTAGCACACC
ACGGGCAAAGACAATATACGACGGGCAAACCGCAGCAACCTTTCACCCAA
GGTATAGCCAGCAAGCGTATACCCCTAGCACAAACACACGTGGTATGTGA
GTCTGCTGTGCACATAATAGCTTGGTGGGAATTTCTTCCTGTCTGTCCTC
TTGGTGTTTATTGTTTTTCCTTCGAAGTGTCATTTTATTATAATCTTCTA
CAAAGTCTGGAAGGTAACTCACTGGCAAATAATGAGAGCGCGACACCGGT
CGCCGCCCTCTGTTGTCCAGAAACCAAGTTTCCCTTCCATGTCAACTGGC
CGGGGCCCAACAAATGCTGTCTCGATCTACCGAGACCCCCAGTGGTAATA
TACCACTGACATCCAACCATCAAGCCCCCGCTTGAACCAGTCCTTTGTAA
AATTATCACCATAAAATATTCACCGTTTAAATAAAAATACCCTTCCAGGT
ACATCCCCTAGATGCCGCTAATCCCCCCTCCCACTTTCGAAGAAAAAAAG
GGTGGGGTGGGTGGGAAAAAACGACACCACTACTAGGTCCCGAAGCAAGG
CTGATCGACAGGTAGCGGTAGCAGTGTTGTTCGCTCACAAGCCCACAAGT
TTGTGAGAGCGTTAGACTTTGGACTGAGCTTGTGTGCGACCCCTGACAGG
TAGCTCAGCTCCTTTTCTTGCAGATATATAATTATTTTGACATCTCCGTA
AACCAATAGAGGTAACTACTATTACTGCAAAAAATCTTTAATTCTAAGTC
GCTCACAGGGCGAGAAAGCCCTCTCTCGAGCGCCCACAGGCGATGCCTGG
ACACAGGAGTTCTGACGTCATGAACACATATTGTGACGTCATAATCACCG
ATTCTGCGCGTGGCGTTGTGGTATGATGTGTCTGTGTGTGTGCTTGAGGC
ACACACGCCCGAAAAGGGGCGGAGAAAGTCGCACATGTACACAGACATCT
GCGGGCGCGACGTTCGATCCGTGCGCTGACGAGCCGCAGCATCACACACT
GCTGTGCGTAAAGCGGGTCCTCAGATTTTTTGGCGCGGGACTGTCATCAT
AGAGGCCAGTGTGCACATACGTGTGCACGTGCACAGCAGTGCACTCACAC
CACCAACATAAGATGCCATCACCGTGGCTTCTACTACTACACATCAAACA
GACAGCTACGTATTCATGACTGAGCTATGCATGTTGTGCATACAATTGGC
TCTCTGAGAGTTTTTGTTTTTTCATGTTTTTCTGCTGTGTAGTAGGCCTG
TCGGAAACAAGCACGCGGGGAGCTTTCTTTTCTGCTGTGAAGATCCGATG
TTCAGTGATACGTGTGCACGTGCACAGCAGTGCACTCACACCACCAACAT
AAGATGCCATCACCGTGGCTTCTACTACTACACATCAAACAGACAGCTAC
GCATTCATGGCTGAGCTATGCATGTTGTGCATACAATTGGCTCTCTGAGA
GTTTTTGTTTTTTCATGTTTTTCTGCTGTGTAGTAGGCCTGTCGGAAACA
AGCACGCGGGGAGCTTTCTTTTCTGCTGTGAAGATCCGATGTTCAGTGAT
ACGTGTGCACGTGCACAGCAGTGCACTCACACCATGTATTTTGGCGGAGG
AGGGCGTTAGTCCGGGCCGCGGGCACAGTTTTAGTGTCAGAGAGTTAAGA
GAAGGCCCCAGCTCATCACGCACACAGCACCAAGCACTCTTCTAATATAA
ACAGAAAATGAGCGCTTTAGAGCGCGTTGTCAAAGTGTTCACCGCTCAAA
CAGATGCCAATACCAGTCTCAAAAAAAGGTCCCCGTTTATCCGTTTTCCG
TCGGGAGTCGGGAGATTGTATTGTCCCCTTAACCCCCGTTAGTCCGGGCC
GCCGGGCAGAGGGAGTGAGAGAAGCAGCCCCCCCCTCATCGCACACACAG
CACCAACCACCCTAATAAGCAGAAAATGAGTGCGTTATCGAAGTGTTCAC
CACTGAAACGTAAGCAAGGCGGCAGCACCGCAGCAAAGCCCAGGGCCCTC
TTTGCGGCTGGCAACCCGGACTGGCCCTGCCTCGACAAGGACTGCCCTGA
CGGTCGACTGAAGGTCTGCCTTCGTAAAAAAGATAACAAAACGAGGTTTC
CACCAGAAAAAAATTACGCTTTAAAAAAACGTTTTTGCTCAAATCCACGT
CTTTCCAATTACGCCGCAATTTTAAAACGTTTTTTTGCTCCAAGCACGCG
CGTACTTTTTTCTCAGGAAAGGTATGTTTTTTTTACGTTTTTGCTGTTTT
GACCTTTCCGTTCGGATCTTCCTGGATGGTATCAACCAGCGGGAACAAGA
GAGATGATATGAAATATGCATTGCTGCTGTATGCACGCACAATACACAGC
AGTACTTGTACAAGTATTGAACAACAACAACAACGACAGACCAAGCAAAA
GGAAGCACACAACGATGCTACCACTGCTGCTGCTGCTGCTGCTGCTGTAG
TGTAGCACACCACGGGCAAAGACAATATACGACGGGCATACCGCAGCAAC
CTTTCACCCAAGGTATAGCCAGCAAGCGTATACCCCTAGCACAAACACAC
GTGGTATGTGAGTCTGCTGTGCACATAATAGCTTGGTGGGAATTTCTTCC
TGTCTTCTTGGTGTTTCCCCCACGATGATGACACGGCAGCAGCTGTGAGC
ACCAGCACCAGCGCCACCACCACCCACCCGCAGCGGCGGTCACAGAGATA
TGCATCTACCTGTCTGTCTGTGTACTACTGTAGTACTGTCTATCCAGACA
GCTAGCTGTGTGATGCTGCGCCACGCCTCGGCTTGCGCAGGGTGGGTTGG
AACCGCTCGCCGCTGCTCCGTCTGGTGGTTCTTCTTCTCTCCTACTCACT
CCTCATGCAAAAATGTGATTCCTCCGCGGTCAAAATACAACACACACACA
ACACTACATACATACATGCTGCTAACTACTGCTGCTCCTGCTGTTTGTTT
GTGCGTGGGTGACGATGCGCTATGACCTCGACTTTCGCGGGGTGAAGCAG
AAAGAACCGCTGCTACGGCCTAGTGTATGTATGTTGTTTCCTGTGTATCA
CCCCTCGTTTCCAAGTATTACACAATAATAGAGCAATGACATGCGTATCT
CCGTCAAGTGTTTGTATTTTCCGACGACGACATAAAACGACTCTTCACGG
TGGCCGCCAACTGCCAAGAGCTACAAGCGGCCCGATTATGAAAAGCGTAA
ATTTCAACCGTCACTTGAGGAAAAGCGTAAATTCAAAAGCGTAAATTTAA
AGACGTGTTCTGGTGGAAACCTCGTAAAGAATACGCGACGTGCGATCAAA
ACATCTGGAACGACAAGAACACTTGCAAGGTATGTTTGGGTTGAAATGTC
ATGTGTGTGTACATGAATCTAATGCTCGTTTGTTCAAGTGCTGCAGACCG
TGTGTTGGGGGTGTCGGTGTGGAGTGAGTTGCATGTATGTGCTCTGTGCA
CCGCCTGTGTGTTGCATTTTGTGTGTTCTTTACGAACCCTTTGATGACCC
TCACGAATGATTTTGTATAATATTTCGATAATATTTTCCTACGTCTTTCA
ACAACCATCATCGTTCTTTTTTTTGCATTGCATATGTCCAAGCTGCTCCA
CTGCCACAACTGTAGCTGTGCCCTGAATCTGTTGCTCGTTTGTTTCAGTC
CTGCAGACGGTGTGTTGCTGATGACAATGTGGTCTCCGGATTGCACGTGC
TGTCTTTTCACATGTATGTGTGTTCGTAGTGCCGGAATTTTTTTCTCTGT
TCTTCCGTCTTTCAACAATATCAGCACTTCGTTTTTTTTTTCATGCCCCG
TATATTTCAAGGTCACGCTTTCCATGCTACTCGCCAGCAAGGACCATCCA
CACGCCTGCCAGCTCTGCCTCTGTGACGTCGGGGGGTACCCTTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:370608..375302-

>mRNA_P-littoralis_Contig60.78.1 ID=mRNA_P-littoralis_Contig60.78.1|Name=mRNA_P-littoralis_Contig60.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig60:370608..375302- (Pylaiella littoralis U1_48)
ATGCTGTGTCAAGAAAACCTAGGAGCGTGTTCCCAAAGAATTTTTGGAAC
GATCCACCCGACCACCTCACGCATTTTTGTGTCGATGGCGCCCTCCAGCC
CTCGATTAACGGTGTGTTACCATCCCAGCGGTAATTCGGCAATCCTTTCG
GTCGCAGTTGTGGTGCACGAGACTTCATTGTTCGATGTCACGCTTTCCAT
GCTACTCGCCAGCAAGGACCATCCACACGCCTGCCAGCTCTGCCTCTGTG
ACGTCGGGGGGTACCCTTCA
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