mRNA_P-littoralis_Contig6.241.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.241.1
Unique NamemRNA_P-littoralis_Contig6.241.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:977352..979249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FIM9
Preferred nameVPS72
PFAMsYL1,YL1_C
Model size1900
Max annot lvl2759|Eukaryota
KEGG koko:K11664,ko:K14859
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0016604,GO:0016607,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034728,GO:0035019,GO:0035267,GO:0036211,GO:0042393,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097346,GO:0098727,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue5.94e-05
EggNOG OGsKOG2897@1|root,KOG2897@2759|Eukaryota
Descriptionhistone exchange
Cds size1011
COG categoryS
BRITEko00000,ko03009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791242.0629907-UTR-P-littoralis_Contig6:977351..9782381680791242.0629907-UTR-P-littoralis_Contig6:977351..978238Pylaiella littoralis U1_48UTRP-littoralis_Contig6 977352..978238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791242.0788887-CDS-P-littoralis_Contig6:978238..9792491680791242.0788887-CDS-P-littoralis_Contig6:978238..979249Pylaiella littoralis U1_48CDSP-littoralis_Contig6 978239..979249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.241.1prot_P-littoralis_Contig6.241.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 978239..979249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.241.1

>prot_P-littoralis_Contig6.241.1 ID=prot_P-littoralis_Contig6.241.1|Name=mRNA_P-littoralis_Contig6.241.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=337bp
NGSLKGAGGGAAAAAVAAGSGQSTGGASKHSSASSASKDGEKKSKSSASK
GKGKAKGGGGGGAGAGVAESGATANASSTASVAGAEKAKTGTKRKQAAGS
KGTKPTKRPFFAAGPGSGAAGAALAPSAAGGRHEQQQLVPLKPLPTAVIH
YGANDPAESTPEGSAVVKAAAFAAVAAQKAAAGGWQAAGNGAGEDGGRHE
VPEGSAVVKAAAYAAAAAQQAAAAAGGATPGGPAPPRKTHKTAAAAPVAA
AAAADGADGTLPGAAMAQPALPQQQQQQQQQQLATTAAPRMLGGGVAGWE
AGPNTTTAGAPKCVKWIQTAQPAAPLRQPPGEARRG*
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mRNA from alignment at P-littoralis_Contig6:977352..979249-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.241.1 ID=mRNA_P-littoralis_Contig6.241.1|Name=mRNA_P-littoralis_Contig6.241.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1898bp|location=Sequence derived from alignment at P-littoralis_Contig6:977352..979249- (Pylaiella littoralis U1_48)
AACGGGTCGTTGAAGGGGGCTGGGGGTGGGGCAGCGGCGGCGGCGGTGGC
GGCGGGCAGCGGGCAGAGCACCGGCGGGGCAAGCAAGCACAGCTCAGCAT
CGTCGGCGTCCAAAGATGGGGAGAAGAAATCAAAGTCATCCGCGAGCAAG
GGCAAGGGAAAAGCGAAGGGTGGCGGTGGTGGCGGTGCGGGGGCGGGAGT
AGCGGAGAGCGGTGCCACTGCTAACGCTTCTTCTACGGCCTCTGTCGCTG
GTGCCGAGAAGGCCAAGACTGGCACGAAGCGCAAGCAAGCCGCCGGGAGC
AAGGGGACAAAACCCACAAAGCGGCCTTTTTTTGCGGCGGGGCCCGGGTC
GGGGGCAGCGGGAGCAGCATTAGCACCCTCGGCGGCTGGCGGCAGGCACG
AACAGCAGCAGTTGGTGCCTTTGAAGCCTCTACCCACGGCCGTGATTCAC
TACGGCGCGAACGATCCGGCGGAATCTACCCCGGAGGGGAGTGCGGTAGT
GAAAGCAGCGGCCTTCGCCGCAGTAGCGGCACAAAAAGCGGCCGCTGGGG
GATGGCAAGCGGCCGGCAACGGCGCTGGCGAAGACGGGGGAAGGCACGAA
GTTCCCGAAGGCAGCGCGGTGGTGAAGGCAGCGGCCTACGCCGCGGCGGC
AGCGCAACAAGCGGCGGCTGCGGCAGGGGGGGCTACACCAGGCGGACCCG
CACCGCCAAGAAAAACACACAAGACTGCAGCGGCAGCACCAGTTGCGGCG
GCTGCTGCTGCTGACGGGGCTGACGGGACTCTTCCGGGAGCAGCGATGGC
GCAACCGGCGCTACCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGG
CCACAACGGCAGCGCCACGTATGCTGGGCGGAGGGGTGGCTGGATGGGAA
GCTGGCCCGAACACAACGACCGCGGGGGCGCCGAAATGCGTGAAGTGGAT
TCAAACGGCGCAGCCCGCCGCTCCGCTGCGACAACCGCCAGGGGAGGCTA
GGCGAGGGTAGACGGGGCCAGCTCTATGATTAGGTTAGGTTAGGGATGGA
CGTGCTTCCTGTCCGGACGACTAGCCGGGCCGGGGGTCTTGCGACTATGA
TAGAGCAGGAATACGTGAAGGACGCTGTTTCTTACAGGATAGCAGCAGTT
GCACAAAATGTCTGGTCGGCAGCTTTGATATGTCCCTGGCTGGTTCTGGC
GTGGTTTGACCGTTGCACGAGAGAGGGAAAGAGAGAGAAAGCGCCGAAAA
AGATGGCGGACAGCAGCTAACCCCAGCGCGAGAGGCAGCAGTAATCAAAC
CAGACCGCCCAATGGAAGCTGTTCCCCTTGCTGGCAGGTAGCCGGGGGGT
AGGTTTTACCGAGCTGGCCGGTGATACCACCGCTGCTTTGTGCTTTTGAG
GCACGTCGTTGTAAATGATGGTTATACGAAGTATGTGTGTATGTGTGTTT
CTCTTGTTCAATTGTGTAGACCGCGCTTACCGGCTTCCAATAACAAAACG
GCAGTTGAAGCGGTGTGTGTGTTGGTATGTGTGTGCGTGTGTGTGCGTGT
GCGCGCACGCTAGTGAATGTTGTGCGGCTGTAGCGTGGAGCTTCCGCCGC
ACTTCAGTTTTTCCGACCCGGCGGGAAGAAATAAATACTGTAGTATCACA
AAATCTTTTACGGCAAAAACAAAAATAATCTCAGAGAGGACGGCGGTATG
TGTGTCGTCACGGATGGTCACGGTGCCGTGAGATGAGAAACCGGACGTTC
GTTCCGCGGTCACACGTTTCACACAGTCGCGAAGAGGTTACCAGCGAGGT
CGTGTCCGTGGTGCGATAAATGGCGGGGGTTGGCGGGTCGAAAAAGTGCC
CAATACTCTGTAGTACTCGTTTATCCTGAGCGCAAGGTTTCTCCTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:977352..979249-

>mRNA_P-littoralis_Contig6.241.1 ID=mRNA_P-littoralis_Contig6.241.1|Name=mRNA_P-littoralis_Contig6.241.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1011bp|location=Sequence derived from alignment at P-littoralis_Contig6:977352..979249- (Pylaiella littoralis U1_48)
AACGGGTCGTTGAAGGGGGCTGGGGGTGGGGCAGCGGCGGCGGCGGTGGC
GGCGGGCAGCGGGCAGAGCACCGGCGGGGCAAGCAAGCACAGCTCAGCAT
CGTCGGCGTCCAAAGATGGGGAGAAGAAATCAAAGTCATCCGCGAGCAAG
GGCAAGGGAAAAGCGAAGGGTGGCGGTGGTGGCGGTGCGGGGGCGGGAGT
AGCGGAGAGCGGTGCCACTGCTAACGCTTCTTCTACGGCCTCTGTCGCTG
GTGCCGAGAAGGCCAAGACTGGCACGAAGCGCAAGCAAGCCGCCGGGAGC
AAGGGGACAAAACCCACAAAGCGGCCTTTTTTTGCGGCGGGGCCCGGGTC
GGGGGCAGCGGGAGCAGCATTAGCACCCTCGGCGGCTGGCGGCAGGCACG
AACAGCAGCAGTTGGTGCCTTTGAAGCCTCTACCCACGGCCGTGATTCAC
TACGGCGCGAACGATCCGGCGGAATCTACCCCGGAGGGGAGTGCGGTAGT
GAAAGCAGCGGCCTTCGCCGCAGTAGCGGCACAAAAAGCGGCCGCTGGGG
GATGGCAAGCGGCCGGCAACGGCGCTGGCGAAGACGGGGGAAGGCACGAA
GTTCCCGAAGGCAGCGCGGTGGTGAAGGCAGCGGCCTACGCCGCGGCGGC
AGCGCAACAAGCGGCGGCTGCGGCAGGGGGGGCTACACCAGGCGGACCCG
CACCGCCAAGAAAAACACACAAGACTGCAGCGGCAGCACCAGTTGCGGCG
GCTGCTGCTGCTGACGGGGCTGACGGGACTCTTCCGGGAGCAGCGATGGC
GCAACCGGCGCTACCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGG
CCACAACGGCAGCGCCACGTATGCTGGGCGGAGGGGTGGCTGGATGGGAA
GCTGGCCCGAACACAACGACCGCGGGGGCGCCGAAATGCGTGAAGTGGAT
TCAAACGGCGCAGCCCGCCGCTCCGCTGCGACAACCGCCAGGGGAGGCTA
GGCGAGGGTAG
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