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Homology
BLAST of mRNA_P-littoralis_Contig6.66.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE) HSP 1 Score: 366 bits (940), Expect = 9.480e-111 Identity = 218/317 (68.77%), Postives = 240/317 (75.71%), Query Frame = 1
Query: 1 KEGGAARTIVVPTLRYNIQVDRGVPFSMGLTLKEQADELASAETARFEAKEKEIKKAALEGGDNEAPTPDKGKGGSSKAAARKKKSPEARA---------RRKELAKVKSTLGRLQRRVDGFWYSKLPFAGASGFIKRVLLAMEKDVTLAGGVSTDRIRVYRPLTGAKDYSRAKLRESYEKVSVERAKGYWRAEYSGQRNEIRFKHFVILAGSVLPVWQKVEDVLNANTHTQHERRLRIVRATEKEDEW-NKADKEXXXXXXXXXXXXXXXXXXXXXXXPSAEASKRGAAGDKAAAGHEVK-DKKPCCETCGGSQDV 918
KE ++RT+VVPTLRYNIQVDRGVPFSMGL+LK+QAD +AS ETARFEAKE EIKKA+ + GD EAPT RRKEL+KVKSTLGRLQRRVDGFWYSK PFAGASGF KRVLLAMEKDVTLAG ++TDRIRVYRPLTGAKDYSRAKLRESYEKVSV++A+GYWR EYSG+RNEIRFKHFVILAGSVLPVW+KVE VLNANTHTQHERRLRIVRATEKEDEW N D + XXXXXXXX A+++ A+GDKA K D+KPCCE CGGSQDV
Sbjct: 340 KEKHSSRTLVVPTLRYNIQVDRGVPFSMGLSLKQQADTVASTETARFEAKEAEIKKASQKAGDAEAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKELSKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLLAMEKDVTLAGELATDRIRVYRPLTGAKDYSRAKLRESYEKVSVDKARGYWREEYSGERNEIRFKHFVILAGSVLPVWRKVEGVLNANTHTQHERRLRIVRATEKEDEWDNMPDDDGTGGNGQEGGXXXXXXXXKEGAGEKADSAGGEASGDKATGDSSSKEDEKPCCEVCGGSQDV 656
BLAST of mRNA_P-littoralis_Contig6.66.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI) HSP 1 Score: 228 bits (580), Expect = 2.610e-63 Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1
Query: 397 AMEKDVTLAGGVSTDRIRVYRPLTGAKDYSRAKLRESYEKVSVERAKGYWRAEYSGQRNEIRFKHFVILAGSVLPVWQKVEDVLNANTHTQHERRLRIVRATEKEDEWNKADKEXXXXXXXXXXXXXXXXXXXXXXXPSAEASKRG-AAGDKAAAGHEVK-DKKPCCETCGGSQDV 918
AMEKDVTLAGG++TDRIRVYRPLTGAKDYSRAKLRESYEKVSV++A+GYWR EYSG+RNEIRFKHFVILAGSVLPVW+KVE VLNANTHTQHERRLRIVRATEKEDEWN D + XXXXXXXXX S G A+GDKAA K D+KPCCE CGGSQDV
Sbjct: 321 AMEKDVTLAGGLATDRIRVYRPLTGAKDYSRAKLRESYEKVSVDKARGYWREEYSGERNEIRFKHFVILAGSVLPVWRKVEGVLNANTHTQHERRLRIVRATEKEDEWNMHDDDGTGENGKEGGXXXXXXXXXKEGAGEKAGSDGGRASGDKAAGDSSSKEDEKPCCEVCGGSQDV 496
BLAST of mRNA_P-littoralis_Contig6.66.1 vs. uniprot
Match: D8LL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL29_ECTSI) HSP 1 Score: 107 bits (266), Expect = 3.670e-24 Identity = 68/116 (58.62%), Postives = 77/116 (66.38%), Query Frame = 1
Query: 82 MGLTLKEQADELASAETARFEAKEKEIKKAALEGGDNEAPTPDKGKGGSSKAAARKKKSPEARA----RRKELAKVKSTLGRLQRRVDGFWYSKLPFAGASGFIKRVLLAMEKDVT 417
MGL+LK+QAD +ASAETARFEAKE +IKK + + GD EAPT RRKEL+KVKSTLGRLQRRVDGFWYSK PFAGASGF KRVLL + +T
Sbjct: 1 MGLSLKQQADTVASAETARFEAKEADIKKTSQKAGDAEAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKELSKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLLGVRPQMT 116
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Seed ortholog | 2880.D8LN05 |
| Model size | 1326 |
| Max annot lvl | 2880.D8LN05|- |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Evalue | 4.28e-64 |
| EggNOG OGs | KOG1513@1|root,KOG1513@2759|Eukaryota |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_000890.1 |
| Description | cellular response to interleukin-11 |
| Cds size | 1323 |
| COG category | S |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791233.8615603-CDS-P-littoralis_Contig6:277796..278330 | 1680791233.8615603-CDS-P-littoralis_Contig6:277796..278330 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig6 277797..278330 - |
| 1680791233.872473-CDS-P-littoralis_Contig6:278919..279075 | 1680791233.872473-CDS-P-littoralis_Contig6:278919..279075 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig6 278920..279075 - |
| 1680791233.8819132-CDS-P-littoralis_Contig6:279848..279942 | 1680791233.8819132-CDS-P-littoralis_Contig6:279848..279942 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig6 279849..279942 - |
| 1680791233.8942332-CDS-P-littoralis_Contig6:280163..280306 | 1680791233.8942332-CDS-P-littoralis_Contig6:280163..280306 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig6 280164..280306 - |
| 1680791233.9053018-CDS-P-littoralis_Contig6:280657..280873 | 1680791233.9053018-CDS-P-littoralis_Contig6:280657..280873 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig6 280658..280873 - |
| 1680791233.9188218-CDS-P-littoralis_Contig6:281641..281764 | 1680791233.9188218-CDS-P-littoralis_Contig6:281641..281764 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig6 281642..281764 - |
| 1680791233.9349446-CDS-P-littoralis_Contig6:282454..282511 | 1680791233.9349446-CDS-P-littoralis_Contig6:282454..282511 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig6 282455..282511 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig6.66.1 >prot_P-littoralis_Contig6.66.1 ID=prot_P-littoralis_Contig6.66.1|Name=mRNA_P-littoralis_Contig6.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=441bp
KEGGAARTIVVPTLRYNIQVDRGVPFSMGLTLKEQADELASAETARFEAK EKEIKKAALEGGDNEAPTPDKGKGGSSKAAARKKKSPEARARRKELAKVK STLGRLQRRVDGFWYSKLPFAGASGFIKRVLLAMEKDVTLAGGVSTDRIR VYRPLTGAKDYSRAKLRESYEKVSVERAKGYWRAEYSGQRNEIRFKHFVI LAGSVLPVWQKVEDVLNANTHTQHERRLRIVRATEKEDEWNKADKEEGKA GGGGNGSSDEGGESKDKKDPSAEASKRGAAGDKAAAGHEVKDKKPCCETC GGSQDVDEDDEDSEEEKEKQKKAAKGGRRGKRATLGKGTAEGEGGGGGEN DGESKSKSKKGGGRGKEKRTGRAGGRGNKGRGAADEGDEKEEEEKEEGQD EKHKKGKEGEKRKKGASSARGKGGEATAGGGGGGGGSDGDD back to topmRNA from alignment at P-littoralis_Contig6:277795..282511- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig6.66.1 ID=mRNA_P-littoralis_Contig6.66.1|Name=mRNA_P-littoralis_Contig6.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4717bp|location=Sequence derived from alignment at P-littoralis_Contig6:277795..282511- (Pylaiella littoralis U1_48) AAAGAGGGGGGGGCGGCGCGCACAATCGTGGTTCCTACACTTCGCTACAA
CATACAGGTGTGTGTGTGCTGGAGGAAGGGGGGGGGGAGGAGGGGAATTT
GGCTGTTTGCAGGCGATTATTTTTTCTCTTGTGGATTGGATGTCAACGTG
TGTTGTGTGCGTGAGTGTGTGTTTGTTGGCGCTGATGTGTTTCGTGGGAT
TGTTTTGTTGCATGATAAACCGCTGCGATGATGCAAAATATTTATTTTTC
GTATAGTGTGGGGTTGGTGCTGGTGATACGGGTGTCGAAAAGGAACGTGA
TTATGGTGGTGGCGGTACCAGAAGTGGCGGTGGTGATGGTGATAATGGCG
ATCGCGGTGATCGCGGTGATGATATTGACGGTGCGATGGTGCGATGATGA
TGGTGATGGATATAATGATGGTCATGGTCATGGTCATGGAGATAGTGGTG
TTATGCTGGTCATGGTCCGTGATGATGGCGATGATGGTAGTGACGATGAT
GATCATGGTTATGACAATGGTCATGACGTTCACGGTTGTGGTGATAATGG
TGGTGATTGTGACTACGTTGGTGATGATATTCCATGACAATAATCATGGT
AGTTGCCCGGCGAACGAAAAGAAGTACTTTGGAGTACTTCGGAGTGTACC
TGGTATCTGGACACGACACTTCTGGGCACGCCGCGCCGCCTTCGTCCACC
ACTCCACACCTCCTCATCACCCCATCCCACCCGCCCCCGCCCCCCAGGTT
GACCGTGGCGTACCGTTCTCCATGGGGCTGACCCTCAAGGAACAGGCGGA
CGAATTGGCCTCGGCCGAAACCGCCCGCTTCGAGGCCAAGGAAAAAGAGA
TCAAGAAAGCAGCCCTTGAGGTATGCGTGTATGATACGTGGTGTGTTCTT
CTTCTCGTAACAGCAGTGCACGCAGAAACATAATCAGGTGCATCAGATAC
CACGTGTGTATGTTGAAATAATAATTGCACGAATAATTGCATGATTTTTT
TTGTTGACATTTTGCGGCTTTTGGGAGAAAAAAAATTCAAAAGTAGAAAA
AAAAAAAACTATCATACGAGTATTATATCACAGAACTTTTATCAAAAAGT
AAATTAATACGTACGAAGTATGCAGCTCAAGCGACACTGGATTTACCGAT
TGCTCAAGGGGAGTACAACAGTAGATATCGAAGGACGCAACGTAAGTGCA
GAGTGATTCTTCGAAGTACACAAGCTGTATTCCCCCATCCCATATTTTCT
ATCCTGTTCGTCTCGTCCCTTTCTCTTCTCCCGTGTAACTACCGTATGCA
CGCTAAAGCAGCATGAAGTGTTATCCTCGTTGTTTTTTCAACTAACACGA
TTGTCAAGGGGATGTGATGTGTAAGACACGTCAAAAGAGAGGAGGTATTT
GGAAGCTCCTGGCTGTTCTGACTGATTTTCACTCACCAACTGTTGTCCAT
AGATACGTGTTGTATGCATGCGTATAGCAGGGTGGAACTTGGGGAAAAAA
ACACCGAACAGCGTATAGATCATCTCATTACTATATGATGGCGATTTTCC
TTTTACTCACGACTTCCCGACTCCCCCCCCCCCCCCAACACACACAACGC
CTCCTTCCAAAAAATCAACATCGTTTTGATTGTTTCAGGGCGGAGACAAC
GAAGCTCCCACCCCCGACAAAGGCAAGGGGGGTAGCAGCAAGGCCGCCGC
GAGGAAGAAGAAGAGCCCGGAAGCCCGCGCGCGCCGCAAGGAGCTGGCGA
AGGTGAAGTCGACCCTCGGACGCCTGCAGCGCCGGGTGGACGGGTTCTGG
TACTCGAAGCTGCCCTTCGCCGGAGCGAGCGGCTTCATCAAGCGCGTGCT
TCTGGTGAGTTTTGATGAGTTGCGGTGGTGGTGGCGGTGGTGGTGGCGGT
GGCGGTGGCGGTGGCGGTGGTGGTGATGGGTGGTTGTTGTTGTTGGTTGT
GGCTGGTTGTGAAACTGGTGTTATTGTTGGTGGTTATCATAGCGTTATTG
GTGATGGTGTTGATTGTGATGGTGATGAGGGGTTTGTTTTTTTTTGGGGA
GGGGGGGCGCTTTCTGTTGAAGACATGTTTTCTCCGTGCCACACGGTTGA
ATGCAAGCATATAATCGCGTGTGGCGTTGCCTTCCCAGCCGAAGGCGAAA
CGTATCTACCATCCATAACAAGCAACCCCTTCCCTTTCCCCCTCTCCTTC
CCCAGGCAATGGAGAAGGACGTTACCTTAGCGGGAGGGGTTTCCACCGAC
CGCATCCGCGTGTACCGACCGCTCACGGGGGCGAAGGATTACAGCCGCGC
CAAGCTGAGGGAGAGCTACGAGAAGGTCTCTGTGGAGAGGGCTAAGGGGT
GAGAGTCGTACGGTGTTGTAACTGAGGATTTCGTAAGGGCCTACCGTATC
ATGTCAGCTTGGCTTGGAAAATGTCACGACAACGGAAGCAACGAAACAAC
TCTGATAAATTCCCCCAACTCCTTTTGGTCGGGAACAATTTTTCAGTGAA
CAATTCTCAGTGAACAATCCTCAGTAAACAATTCTTGATGGACAATTCTC
AATGATATCGTGTTTGCAGTTACTGGCGAGCCGAATACAGCGGGCAACGC
AACGAGATCCGGTTCAAGCACTTCGTAATCCTCGCGGGGAGTGTGCTTCC
CGTCTGGCAAAAGGTGGTGTGATATGATGTGATACGATGTGGTGTCACGT
GGTGTCTGTCATGTGATGTCATTGTCTGTCGTGTGACATCATGTGATATA
ATGCACTGTGGTATCTGTCGTGTGGCGTCATGTGATATCATGTCATCTGA
TATTGTAGGGCATCATATGATATCTGTCATCCGACGTCGTGTGATGGTAT
ATCATCTGATATTGTGGGGGCATAATATTGCTTTTTTTGTACGCCGGGAG
GCCGTAGGCCTCTTCTTTTCCTCTTTGTAGCTGCTAATGCTGTTGATCCT
GATGCTGCTGCTGCTGCTGCTGCTGCTTCACGATCCTCCAAATTTGATCA
CGGTGGCACACGGTCGTAGCATTACCCTGTGTATGATATCATAACTACTG
CTGTAATCCGTTTTTTGGGATAGTCTATCTGCAGTTGTTTTTGCGGCAGT
ACATATCAAAGTTAAAGTTGGAAGGCTTTTGGTGTCTTGGTACTTGGAGC
ACACCCGTGGTACGATATGATACTCGTACAGCGTTCGAACCGTTATGATA
GCATCTTCCAGCAACAGCGACACCAGAACAACAGTAAGTGACACCCCGGA
CAGCAGCAGTACGTGCCACGCTTCAGGAGCAGCGTCATGCGATGTGCGCG
TTTGTTTCCGGGGGGCAGGGAAGGGAGTTAATTTACGAGACCGACCGAAA
CGGAAAAGGTGACGTGACATAATAACACCATGCGAACCCCCCCCCCCGCC
GGCCGCGTGCGCCCTACTCGTCGTGCAACCATGCAGGTGGAGGACGTGCT
GAATGCCAACACGCACACCCAGCACGAGAGGCGGCTGCGCATCGTCCGCG
CCACCGAGAAGGAGGACGAGTGGAACAAAGCCGACAAGGAGGAGGGGAAA
GCCGGCGGCGGCGGCAACGGCAGCAGCGATGAGGGGGGAGAGGTGCGCGC
GATGAAATCGAGATCGAGACGACGAATTAATGAATGCGTCACGCACGAGT
TCATGGTGACGCGATGCTGCTGCACGAAGGATTGATGTACTGCTGTGTAC
TGCTGCTGTGTAAATATTAATATTGTATCATACTTCGAATCATAGTTATA
TCTGACGTTGGTGAGCGGTTGATGGTCGACCTTTGTTTTTCTGTCTTGTT
GAGAAAGTTCTTGTCAGCTTTCCTCATCTGGTTGCATGAAGCTGCTGAAC
TGCTGCAGCTCTCGGCGGGTATCTATGACACGTACAACGTGTGTTTTTTT
TTTGTAACGCGTGTTGAAACGAGTGCCGTACACAACAAGCCTGTTTCTCG
CTATTTTAATTTTTCCCGGTATTTGTATCTTTCCCAAATAGTGTCCTCCG
TCTTTTTTATCCCCCCCCCCCTCCCCGCCTGCGCGCCTACCGCCTACCGC
GGGGCCCCAACTCTCCGCTTCGCCTTTCCATCCTCATTATATAGTGTGGA
CTCATGTTCTTTTATCCCCGTTTGGATCCGGTTTGATCAGAAAAAAAAAA
TGTCTCGTTCTGTTGCGTGAACGGTATGTAGAGCAAGGACAAGAAAGATC
CGTCAGCAGAAGCTTCGAAGAGAGGCGCCGCTGGGGACAAGGCTGCTGCC
GGGCACGAGGTTAAGGACAAAAAACCCTGCTGCGAGACGTGCGGTGGAAG
TCAGGACGTGGACGAGGATGACGAGGATTCCGAGGAGGAGAAGGAGAAAC
AAAAGAAGGCTGCTAAGGGCGGGCGGCGTGGCAAACGCGCCACTCTCGGC
AAGGGTACTGCTGAAGGAGAAGGAGGGGGCGGTGGCGAGAACGACGGCGA
GAGCAAGAGCAAGAGTAAGAAAGGTGGCGGCAGGGGGAAGGAAAAGAGAA
CGGGGCGAGCTGGTGGCCGTGGCAACAAGGGAAGAGGCGCTGCCGATGAA
GGAGACGAGAAGGAGGAGGAGGAGAAGGAGGAGGGGCAAGATGAGAAACA
TAAGAAGGGCAAGGAGGGAGAGAAGAGGAAGAAGGGGGCGTCGTCTGCAC
GAGGGAAGGGTGGTGAGGCTACCGCTGGTGGTGGTGGTGGTGGTGGTGGC
AGTGATGGCGATGATGG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig6:277795..282511- >mRNA_P-littoralis_Contig6.66.1 ID=mRNA_P-littoralis_Contig6.66.1|Name=mRNA_P-littoralis_Contig6.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1323bp|location=Sequence derived from alignment at P-littoralis_Contig6:277795..282511- (Pylaiella littoralis U1_48) AAAGAGGGGGGGGCGGCGCGCACAATCGTGGTTCCTACACTTCGCTACAA CATACAGGTTGACCGTGGCGTACCGTTCTCCATGGGGCTGACCCTCAAGG AACAGGCGGACGAATTGGCCTCGGCCGAAACCGCCCGCTTCGAGGCCAAG GAAAAAGAGATCAAGAAAGCAGCCCTTGAGGGCGGAGACAACGAAGCTCC CACCCCCGACAAAGGCAAGGGGGGTAGCAGCAAGGCCGCCGCGAGGAAGA AGAAGAGCCCGGAAGCCCGCGCGCGCCGCAAGGAGCTGGCGAAGGTGAAG TCGACCCTCGGACGCCTGCAGCGCCGGGTGGACGGGTTCTGGTACTCGAA GCTGCCCTTCGCCGGAGCGAGCGGCTTCATCAAGCGCGTGCTTCTGGCAA TGGAGAAGGACGTTACCTTAGCGGGAGGGGTTTCCACCGACCGCATCCGC GTGTACCGACCGCTCACGGGGGCGAAGGATTACAGCCGCGCCAAGCTGAG GGAGAGCTACGAGAAGGTCTCTGTGGAGAGGGCTAAGGGTTACTGGCGAG CCGAATACAGCGGGCAACGCAACGAGATCCGGTTCAAGCACTTCGTAATC CTCGCGGGGAGTGTGCTTCCCGTCTGGCAAAAGGTGGAGGACGTGCTGAA TGCCAACACGCACACCCAGCACGAGAGGCGGCTGCGCATCGTCCGCGCCA CCGAGAAGGAGGACGAGTGGAACAAAGCCGACAAGGAGGAGGGGAAAGCC GGCGGCGGCGGCAACGGCAGCAGCGATGAGGGGGGAGAGAGCAAGGACAA GAAAGATCCGTCAGCAGAAGCTTCGAAGAGAGGCGCCGCTGGGGACAAGG CTGCTGCCGGGCACGAGGTTAAGGACAAAAAACCCTGCTGCGAGACGTGC GGTGGAAGTCAGGACGTGGACGAGGATGACGAGGATTCCGAGGAGGAGAA GGAGAAACAAAAGAAGGCTGCTAAGGGCGGGCGGCGTGGCAAACGCGCCA CTCTCGGCAAGGGTACTGCTGAAGGAGAAGGAGGGGGCGGTGGCGAGAAC GACGGCGAGAGCAAGAGCAAGAGTAAGAAAGGTGGCGGCAGGGGGAAGGA AAAGAGAACGGGGCGAGCTGGTGGCCGTGGCAACAAGGGAAGAGGCGCTG CCGATGAAGGAGACGAGAAGGAGGAGGAGGAGAAGGAGGAGGGGCAAGAT GAGAAACATAAGAAGGGCAAGGAGGGAGAGAAGAGGAAGAAGGGGGCGTC GTCTGCACGAGGGAAGGGTGGTGAGGCTACCGCTGGTGGTGGTGGTGGTG GTGGTGGCAGTGATGGCGATGAT back to top
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