mRNA_P-littoralis_Contig115.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.31.1
Unique NamemRNA_P-littoralis_Contig115.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:97504..98638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size518
Hectar predicted targeting categoryother localisation
Exons2
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.312995-CDS-P-littoralis_Contig115:97503..979551680789469.312995-CDS-P-littoralis_Contig115:97503..97955Pylaiella littoralis U1_48CDSP-littoralis_Contig115 97504..97955 -
1680789469.3270864-CDS-P-littoralis_Contig115:98574..986321680789469.3270864-CDS-P-littoralis_Contig115:98574..98632Pylaiella littoralis U1_48CDSP-littoralis_Contig115 98575..98632 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.3419085-UTR-P-littoralis_Contig115:98632..986381680789469.3419085-UTR-P-littoralis_Contig115:98632..98638Pylaiella littoralis U1_48UTRP-littoralis_Contig115 98633..98638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.31.1prot_P-littoralis_Contig115.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 97504..98632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.31.1

>prot_P-littoralis_Contig115.31.1 ID=prot_P-littoralis_Contig115.31.1|Name=mRNA_P-littoralis_Contig115.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MGWSCAEVGCKQAGSYGHRDADGKPKGNVMCREHREADMINMKAPKCSIR
GCYKAPWRGYEIDKKNKYCDNHATEEMVIIRKECGTEGCKVTPNYGFERS
RTHCVTHKQPGMSKPNTVARTRGSTGPRKSAVTVLGIAAAAARAVAMAAE
EEVRQMVAQLVDIVSAKAAA
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mRNA from alignment at P-littoralis_Contig115:97504..98638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.31.1 ID=mRNA_P-littoralis_Contig115.31.1|Name=mRNA_P-littoralis_Contig115.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1135bp|location=Sequence derived from alignment at P-littoralis_Contig115:97504..98638- (Pylaiella littoralis U1_48)
GGCCAGATGGGGTGGAGCTGTGCGGAAGTCGGTTGCAAGCAGGCAGGATC
GTATGGCCACAGAGGTGGGCAGGCGGTTTGGTAATCCCATCCTTCACGGT
GAACATGTCGTTACACTGCATCTATTTTCCTCTCTCTCTCCCTCTAGCTC
CCCTGTCTCTCTTTCGCTCTCCTCTCTCTCTTCTTTGCCAACTCCTTCTC
CCTCACTCTATCCTTCTCTCTTTCCGCACCCGCCTATCTTAGCAGAGGCA
TCGATGCCATCCTTTTTCGCAAAAAGAAAAAGCACGCACAGCGAACTTGA
AGTTCCCACTGCTGTTCCATCCCCTGTATCACACCACACGTGTGTAATCA
TGCCAGCTCGCACTACACTGACAACCGATGGACTAAGCTGTTGATTTACC
CTGCTCCTGGTTGTGCTTTCGACTTCCCACCCTTCAAATCAGCTTTTTCG
AAACTGGGCCACACACAGCGGTAGCGTTCGTTCATAACGCAATTCCTACG
CTTCCGTCGGCAACGCAAAAATACCACTCACCCGATCCCCACGCACTAGC
TCCAACTCCCTAAACACTCTAACTTTACTCTCTTTGTCTCTTCCCGAATC
ACGAATCGCATTTTTTTACACCAGTATCACACTGTTTTTCTTCGCGTGCA
TTGTTTCTCCACACTCCCCTTGTTTCCTTCCAGATGCCGACGGGAAGCCG
AAAGGGAACGTGATGTGTAGAGAACACAGGGAGGCCGACATGATTAACAT
GAAGGCCCCGAAGTGTTCCATCCGCGGTTGTTATAAAGCTCCATGGCGTG
GCTACGAGATAGACAAGAAGAACAAATATTGTGACAATCACGCCACAGAA
GAAATGGTCATCATCCGCAAGGAATGTGGCACCGAAGGATGTAAAGTCAC
GCCGAATTATGGTTTCGAGCGCTCTCGTACGCATTGCGTTACGCACAAGC
AGCCAGGGATGAGTAAACCCAACACGGTTGCTCGCACGAGGGGTTCCACA
GGCCCTCGTAAGTCAGCTGTAACAGTTCTGGGCATAGCAGCAGCAGCAGC
ACGTGCGGTAGCGATGGCGGCCGAGGAGGAAGTCAGGCAGATGGTGGCGC
AGCTGGTAGACATAGTATCAGCGAAGGCAGCAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:97504..98638-

>mRNA_P-littoralis_Contig115.31.1 ID=mRNA_P-littoralis_Contig115.31.1|Name=mRNA_P-littoralis_Contig115.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig115:97504..98638- (Pylaiella littoralis U1_48)
ATGGGGTGGAGCTGTGCGGAAGTCGGTTGCAAGCAGGCAGGATCGTATGG
CCACAGAGATGCCGACGGGAAGCCGAAAGGGAACGTGATGTGTAGAGAAC
ACAGGGAGGCCGACATGATTAACATGAAGGCCCCGAAGTGTTCCATCCGC
GGTTGTTATAAAGCTCCATGGCGTGGCTACGAGATAGACAAGAAGAACAA
ATATTGTGACAATCACGCCACAGAAGAAATGGTCATCATCCGCAAGGAAT
GTGGCACCGAAGGATGTAAAGTCACGCCGAATTATGGTTTCGAGCGCTCT
CGTACGCATTGCGTTACGCACAAGCAGCCAGGGATGAGTAAACCCAACAC
GGTTGCTCGCACGAGGGGTTCCACAGGCCCTCGTAAGTCAGCTGTAACAG
TTCTGGGCATAGCAGCAGCAGCAGCACGTGCGGTAGCGATGGCGGCCGAG
GAGGAAGTCAGGCAGATGGTGGCGCAGCTGGTAGACATAGTATCAGCGAA
GGCAGCAGCA
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