mRNA_P-littoralis_Contig10.257.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.257.1
Unique NamemRNA_P-littoralis_Contig10.257.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:939801..941051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1251
Hectar predicted targeting categoryother localisation
Exons1
Cds size672
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789326.032372-UTR-P-littoralis_Contig10:939800..9400901680789326.032372-UTR-P-littoralis_Contig10:939800..940090Pylaiella littoralis U1_48UTRP-littoralis_Contig10 939801..940090 -
1680789326.0496976-UTR-P-littoralis_Contig10:940762..9410511680789326.0496976-UTR-P-littoralis_Contig10:940762..941051Pylaiella littoralis U1_48UTRP-littoralis_Contig10 940763..941051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789326.041412-CDS-P-littoralis_Contig10:940090..9407621680789326.041412-CDS-P-littoralis_Contig10:940090..940762Pylaiella littoralis U1_48CDSP-littoralis_Contig10 940091..940762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.257.1prot_P-littoralis_Contig10.257.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 940091..940762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.257.1

>prot_P-littoralis_Contig10.257.1 ID=prot_P-littoralis_Contig10.257.1|Name=mRNA_P-littoralis_Contig10.257.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MSALVVTLLRLSSRPPTGGTLYVKSGGFLDREEAGRAEEKTQRGCKNLCL
RVLFYRERKKCSLQAVRRSCAFRMTCPPPHWYIFRPAGDRLCVCVCVCVV
ISSILDAGQSAHILACVGASVGGDRRQEGQHVAGVSVFFSPVFLLVCGAL
RPFIPFFPRGGLGRLFRFTSALTFHNWNFVSSQTTQSLSTALAFVEVGVF
DGKELPQWVSKHFIAAIFTWYTL*
back to top

mRNA from alignment at P-littoralis_Contig10:939801..941051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.257.1 ID=mRNA_P-littoralis_Contig10.257.1|Name=mRNA_P-littoralis_Contig10.257.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1251bp|location=Sequence derived from alignment at P-littoralis_Contig10:939801..941051- (Pylaiella littoralis U1_48)
ACGGGCATTTGTAGTCGAGGAGAGAAGAGAGGAGAGGAGAAGAGAGGAAA
GGAAATTTACGGTATTTGTATCTTCTTTTTTTTTAACCGGCTATCATACA
CAAGTACGTGTGGTGGATTGGTGTTTGTGCGGTCGAATGTCAGGCGGCCG
ATTTATCCCGCAGTGAGCAGCCCGGGCGGTGGCGTTGGATGCTTCTGGTG
GTCAGTTTTTTTTTTGTTCTTTATTTGCGGCAGGAGCCGGCCTGAGCAGG
CGGCTGCACCCGCACGATGATGTCGCTGTTTTGTGGTAAATGTCTGCTCT
AGTGGTGACGCTCTTGCGGCTGTCCTCCAGGCCGCCCACGGGGGGCACGT
TGTATGTAAAATCGGGGGGATTCCTCGACAGGGAAGAAGCAGGGAGGGCG
GAGGAGAAGACACAACGGGGTTGTAAAAATTTGTGCTTGCGGGTATTATT
TTACAGAGAGAGGAAGAAATGTTCATTACAGGCAGTACGCAGAAGCTGCG
CCTTTCGTATGACATGCCCCCCTCCGCACTGGTATATATTTCGTCCAGCT
GGGGACAGGTTGTGTGTGTGTGTGTGTGTGTGTGTCGTCATCTCATCTAT
TCTGGACGCCGGCCAGTCTGCACACATTTTGGCGTGTGTGGGCGCGTCGG
TCGGGGGTGACAGAAGACAGGAAGGTCAACATGTGGCAGGAGTATCTGTT
TTTTTCTCTCCAGTTTTCCTTCTTGTGTGCGGTGCATTGCGGCCTTTTAT
ACCTTTTTTCCCGCGGGGAGGGCTTGGCCGTCTCTTTCGTTTCACGAGCG
CATTGACTTTTCACAATTGGAATTTCGTTAGCTCACAAACGACACAATCG
CTTTCCACCGCTTTAGCCTTCGTAGAGGTGGGCGTTTTCGATGGGAAAGA
ATTGCCGCAATGGGTCAGCAAGCACTTTATTGCTGCAATTTTTACCTGGT
ACACGCTATGATATACTTCGTACCTTTTTTTGTCGTCGATGTTGGTGTTG
GTGTAGGTGTTGGTGTTGGGGAAAGAAGCAAGCGCTCCGAGTGGTGGGTA
AAGGGGGACGCGTCGGGCGGTTAGGTCACGGTCGACGGAAAAAAAACTGT
GGTGGTGACAGGCAAAAATATGATAGCAGCAGTATTGAAACATGGTCTTA
CGTAGCCGTTCAGGCTTTTGCCTGTCTGTTAATATGGACAAAAGAGAGAG
AGAAATACATCAAATTCCCGCACTTTGGCCGATCAGAAATTAGCGGCGCC
G
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig10:939801..941051-

>mRNA_P-littoralis_Contig10.257.1 ID=mRNA_P-littoralis_Contig10.257.1|Name=mRNA_P-littoralis_Contig10.257.1|organism=Pylaiella littoralis U1_48|type=CDS|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig10:939801..941051- (Pylaiella littoralis U1_48)
ATGTCTGCTCTAGTGGTGACGCTCTTGCGGCTGTCCTCCAGGCCGCCCAC
GGGGGGCACGTTGTATGTAAAATCGGGGGGATTCCTCGACAGGGAAGAAG
CAGGGAGGGCGGAGGAGAAGACACAACGGGGTTGTAAAAATTTGTGCTTG
CGGGTATTATTTTACAGAGAGAGGAAGAAATGTTCATTACAGGCAGTACG
CAGAAGCTGCGCCTTTCGTATGACATGCCCCCCTCCGCACTGGTATATAT
TTCGTCCAGCTGGGGACAGGTTGTGTGTGTGTGTGTGTGTGTGTGTCGTC
ATCTCATCTATTCTGGACGCCGGCCAGTCTGCACACATTTTGGCGTGTGT
GGGCGCGTCGGTCGGGGGTGACAGAAGACAGGAAGGTCAACATGTGGCAG
GAGTATCTGTTTTTTTCTCTCCAGTTTTCCTTCTTGTGTGCGGTGCATTG
CGGCCTTTTATACCTTTTTTCCCGCGGGGAGGGCTTGGCCGTCTCTTTCG
TTTCACGAGCGCATTGACTTTTCACAATTGGAATTTCGTTAGCTCACAAA
CGACACAATCGCTTTCCACCGCTTTAGCCTTCGTAGAGGTGGGCGTTTTC
GATGGGAAAGAATTGCCGCAATGGGTCAGCAAGCACTTTATTGCTGCAAT
TTTTACCTGGTACACGCTATGA
back to top