mRNA_P-littoralis_Contig1146.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1146.8.1
Unique NamemRNA_P-littoralis_Contig1146.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1146.8.1 vs. uniprot
Match: D7G347_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G347_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 8.020e-12
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 1 
Query:  511 DMCKGLYEAGNKAGERCGSRAKADNNGFCGRHTSQYDKGRVKKRKSRPCRGPGGGAAQE---LTDPIGDDDLSECGSEGAFPGDLADYDENGEAKITLGKGEAAVQARALRNIPEGWARESLKCVFLLVQAT 897
            + C  L+ +G + G+RCG+ AK+     CG   S   K   K  ++R C   G G   E   + +P GD+++S+ GS+G FPGDLADYD   E  +T+ K    + A  +  IPEGW   +LK VF LVQ T
Sbjct:   59 ETCNPLFASGKRQGQRCGAEAKSP----CGTLCSMRSK---KGGENRTCGRGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYD---EPSVTI-KSPQQINAM-VDKIPEGWGMAALKFVFELVQHT 178
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BLAST of mRNA_P-littoralis_Contig1146.8.1 vs. uniprot
Match: D7FZ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ42_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 6.500e-11
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 1 
Query:  511 DMCKGLYEAGNKAGERCGSRAKADNNGFCGRHTSQYDKGRVKKRKSRPCRGPGGGAAQE---LTDPIGDDDLSECGSEGAFPGDLADYDENGEAKITLGKGEAAVQARALRNIPEGWARESLKCVFLLVQAT 897
            + C  L+ +G +  +RCG+ AK+     CG   S + K   K  ++R C   G G   E   + +P GD+++S+ GS+G FPGDLADYD   E  +T+ K    + A  +  IPEGW + +LK VF LVQ T
Sbjct:  394 ETCNALFASGKRQRQRCGAEAKSP----CGTLCSMHSK---KGGQNRTCGRGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYD---EPSVTI-KSPQQINAM-VDKIPEGWGKAALKFVFELVQHT 513
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BLAST of mRNA_P-littoralis_Contig1146.8.1 vs. uniprot
Match: A0A6H5JFP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP3_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.000e-10
Identity = 54/149 (36.24%), Postives = 74/149 (49.66%), Query Frame = 1 
Query:  469 ARTANNKRTSG--GKIDMCKGLYEAGNKAGERCGSRAKADNNGFCGRHTSQYDKGRVKKRKSRPCRGPGGGAAQELTDPI-GDDDLSECGSEGAFPGDLADYDENGEAKITLGKGEAAVQARALRNIPEGWARESLKCVFLLVQATARL 906
            A  A +K+  G  G+   C   + +G K G  CG+ AK+    FC  H+ Q  + R   R      G GG    E    + GDDD+S+ GSEG FPGD  DYD++       GK    V+A  +  I E W +E+L  +F LVQ T +L
Sbjct:  340 AGVAPSKKQRGKRGRRSTCTATFASGPKQGGPCGAEAKSPCGMFCNEHSRQGSRSRTCGRG-----GKGGDDEAEYEQELEGDDDMSDGGSEGEFPGDAVDYDQD---VFVSGKSPQQVKAM-VDKIQEAWGKEALAFIFGLVQNTKQL 479
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BLAST of mRNA_P-littoralis_Contig1146.8.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 6.740e-9
Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 1 
Query:  517 CKGLYEAGNKAGERCGSRAKADNNGFCGRHTSQY------------DKGRVKKRKSR---------------PC----RGPGGG--AAQELTDPIGDDDLSECGSEGAFPGDLADYDENGEAKITLGKGEAAVQARALRNIPEGWARESLKCVFLLVQATARL 906
            C   + +G K GE CG+ AK+    FC +H+ Q              K ++ KR+ R               PC    + P GG   A+   +P GDDD+S+ GSEG FPGD ADYD++       GK    V+A  +  I E WA+E+L  +F LVQ T +L
Sbjct:  414 CTAKFASGPKQGEPCGAEAKSPCGMFCKKHSRQGIRSQGGGAGVAPSKMKLGKRRRRSTCTAKFASGPKQGEPCGAEAKSPCGGDDEAEYEQEPEGDDDMSDGGSEGEFPGDAADYDQD---VFVSGKSPQQVKAM-VDKIQEAWAKEALTFIFGLVQNTKQL 572
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BLAST of mRNA_P-littoralis_Contig1146.8.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.540e-8
Identity = 51/146 (34.93%), Postives = 72/146 (49.32%), Query Frame = 1 
Query:  478 ANNKRTSGGKIDMCKGLYEAGNKAGERCGSRAKADNNGFCGRHTSQYDKGRVKKRKSRPC-RGPGGG--AAQELTDPIGDDDLSECGSEGAFPGDLADYDENGEAKITLGKGEAAVQARALRNIPEGWARESLKCVFLLVQATARL 906
            +  KR   G+   C   + +G K GE CG+  K+    FC  H+ Q         + R C RG  GG   A+   +  G+ D+S+ GSEG FPGD ADYD++       GK    V A  +  I E W +E+L  +F L+Q T +L
Sbjct:  361 SKKKRGKRGRRSTCTSTFASGPKQGEPCGAEEKSPCGMFCIMHSRQGS-------RDRTCGRGGKGGDDEAEYEQEAEGNHDMSDGGSEGEFPGDAADYDQD---VFVSGKSPQQVNAM-VDKIQEAWGKEALTFIFGLMQNTKQL 495
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BLAST of mRNA_P-littoralis_Contig1146.8.1 vs. uniprot
Match: A0A6H5KDI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.230e-6
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  691 TDPIGDDDLSECGSEGAFPGDLADYDENGEAKITLGKGEAAVQARALRNIPEGWARESLKCVFLLVQAT 897
            T+P GD+++S+ GS+G FPGDLADYD   E  +T+ K    + A   +  PEGW R +LK VF LVQ T
Sbjct:  409 TEPEGDEEMSDGGSDGEFPGDLADYD---EPSVTI-KSSQQINAMVDKK-PEGWGRAALKFVFELVQHT 472
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BLAST of mRNA_P-littoralis_Contig1146.8.1 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-5
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:  511 DMCKGLYEAGNKAGERCGSRAKADNNGFCGRHTSQYDKGRVKKRKSRPC-RGPGG--GAAQELTDPIGDDDLSECGSEGAFPGDLADYDE 771
            + C  L+ +GN+ G+RCG+ AK+     C  H+        K  ++R C RG  G     + + DP GD+++S+ GS+G FP DLADYDE
Sbjct:  462 ETCHALFASGNRQGQRCGAEAKSPCGVLCSMHSK-------KGGQNRTCGRGENGRDDETEYVQDPEGDEEMSDGGSDGEFPWDLADYDE 544
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BLAST of mRNA_P-littoralis_Contig1146.8.1 vs. uniprot
Match: A0A6H5K9N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.070e-5
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:  667 GGGAAQELTDPIGDDDLSECGSEGAFPGDLADYDENGEAKITLGKGEAAVQARALRNIPEGWARESLKCVFLLVQATARLEKAGR*KRLQETRL 948
            G    + + DP GD+D+S+ GS+G FPG LA+YD   E  +T+ K    + A  +  IPEGW + +L+ VF LVQ T       + K + ++++
Sbjct:  303 GDNETEYVQDPEGDEDMSDGGSDGEFPGGLANYD---EPSVTI-KSPQQINAM-VDKIPEGWGKPALRFVFELVQHTHDFRNGRKKKNMTKSKV 391
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1146.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G347_ECTSI8.020e-1239.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ42_ECTSI6.500e-1138.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFP3_9PHAE8.000e-1036.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIB8_9PHAE6.740e-934.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFU5_9PHAE4.540e-834.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDI1_9PHAE9.230e-649.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVH8_9PHAE1.770e-538.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9N7_9PHAE6.070e-536.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1146contigP-littoralis_Contig1146:39589..41290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1139
Hectar predicted targeting categoryother localisation
Exons2
Cds size774
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.335302-UTR-P-littoralis_Contig1146:39588..397381680789467.335302-UTR-P-littoralis_Contig1146:39588..39738Pylaiella littoralis U1_48UTRP-littoralis_Contig1146 39589..39738 +
1680789467.3650575-UTR-P-littoralis_Contig1146:41075..412901680789467.3650575-UTR-P-littoralis_Contig1146:41075..41290Pylaiella littoralis U1_48UTRP-littoralis_Contig1146 41076..41290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.3476324-CDS-P-littoralis_Contig1146:39738..405081680789467.3476324-CDS-P-littoralis_Contig1146:39738..40508Pylaiella littoralis U1_48CDSP-littoralis_Contig1146 39739..40508 +
1680789467.356722-CDS-P-littoralis_Contig1146:41071..410751680789467.356722-CDS-P-littoralis_Contig1146:41071..41075Pylaiella littoralis U1_48CDSP-littoralis_Contig1146 41072..41075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1146.8.1prot_P-littoralis_Contig1146.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1146 39739..41075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1146.8.1

>prot_P-littoralis_Contig1146.8.1 ID=prot_P-littoralis_Contig1146.8.1|Name=mRNA_P-littoralis_Contig1146.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=258bp
MSIYHWVNGSDSDGGDDSDDDEDDGDRREDSEEDSDISSLLSTSSPDDKR
SLRQKQQQEEKEGEGDYSKKNEGDGGGGAKKRVQGKQPDKEEGGEGDCSK
TNDGDGARTANNKRTSGGKIDMCKGLYEAGNKAGERCGSRAKADNNGFCG
RHTSQYDKGRVKKRKSRPCRGPGGGAAQELTDPIGDDDLSECGSEGAFPG
DLADYDENGEAKITLGKGEAAVQARALRNIPEGWARESLKCVFLLVQATA
RLEKAGR*
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mRNA from alignment at P-littoralis_Contig1146:39589..41290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1146.8.1 ID=mRNA_P-littoralis_Contig1146.8.1|Name=mRNA_P-littoralis_Contig1146.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1702bp|location=Sequence derived from alignment at P-littoralis_Contig1146:39589..41290+ (Pylaiella littoralis U1_48)
CAGGAGGTTGGTGCAAGCGTCCCCGGGTTGCAGGAGGCCCCTGGCGTCAC
CCCAAGTGCACAGCAGCAACGGGAGCAGCAGCAACGGCCGCAACGGCAGC
CGCTACCGGTGCTGCGCAGGGGGACGCGTACTAGAGATCGTAGCAGTAAA
ATGAGCATATACCATTGGGTCAACGGAAGCGACAGCGATGGTGGCGATGA
CTCTGACGACGACGAGGACGATGGTGATAGGCGAGAGGACAGCGAAGAGG
ATAGTGACATTAGTAGTCTCTTGTCGACGTCCTCTCCGGATGACAAGAGG
TCACTGAGGCAGAAGCAGCAGCAGGAAGAGAAAGAGGGGGAGGGTGATTA
CTCTAAAAAAAACGAGGGCGACGGGGGCGGCGGCGCGAAGAAGCGAGTGC
AGGGGAAGCAGCCGGATAAAGAGGAAGGGGGGGAGGGTGATTGCTCTAAA
ACAAACGACGGTGACGGGGCCCGTACCGCGAACAACAAGCGCACCAGTGG
CGGAAAAATTGACATGTGCAAGGGCCTCTACGAGGCTGGAAACAAGGCGG
GGGAGCGGTGTGGCTCTCGAGCCAAAGCCGACAATAACGGCTTCTGTGGT
CGCCACACAAGTCAGTATGATAAGGGTAGGGTGAAAAAACGCAAGTCAAG
GCCGTGTCGCGGCCCAGGTGGTGGTGCTGCGCAGGAACTGACGGACCCTA
TAGGAGACGATGATCTCAGTGAATGTGGCAGCGAAGGCGCATTTCCTGGT
GACCTGGCGGACTACGACGAGAATGGAGAGGCTAAGATTACGTTGGGAAA
GGGTGAGGCAGCCGTACAAGCCAGGGCGTTGAGGAACATTCCAGAAGGTT
GGGCGCGCGAGTCTTTGAAGTGCGTGTTCCTTTTGGTCCAAGCCACCGCG
CGGCTGGAAAAAGCCGGGAGGTGAGTGTGTGTGTTTACGTGCATGTCTTT
GTGTATCCTTGGGCGTGTGAGTGTTTTTGTTTTGGCCAAATAGTGTTTCC
ACGGAAGACTTCTAAACGATATTAGTTATTGGTGTGGTGTCCACATGCCG
TATTCTATTTTCATCTGAAAGCCCCCCCCCCCCCCCCCCTCTGTTCTCAT
GTATTTTGTATTTCTGCAACAACACACCGGGGGGAAATTACCCGGGCGAA
AGCCGCGTATTTTTATATGTTTCCTCCGTACTGGTGTGCTCCATCCGTTG
TGGGCGTAATATTTTGTCGCATGGATTCAATCGTTGTTGCACTATCAATT
GGTCGTGGAATGCCTACTCTGACATGCCTTGGCGGTGTTTTGCGTCTTGT
ACGTATGAATATCGGGTGTTGTTTGGGCGGAATATTCAACGTGGATGACT
GCTGCTTCACCCAACGAGAGTTAGCCCAAACACTCCACCGTCAGCCATGT
CGCCTGACCCCTTCCTGTCGTCGACGTGCTCCTGACTAACCCCATATACT
CTCGCCCACATGCACCTTGTGTTCAAAATACAGATGAAAGAGGCTGCAAG
AGACGAGGCTGTAAGGGAATCCCCACTTTTCGCGAAATTACGCGAAGCGC
GGCTGCTGCCTCGAGAGGATGGAGAGGGGAAAAATAAAGAAGAGGTGGGC
AGGAGTAAGTTGACTCCTGTCAAACCGGAATACCCTCCAGCACAGCAGTG
GTCATGTGCAGGCATTTCCGAGGGGAGGATATGGGGTGGGTTTGGGACGG
CC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1146:39589..41290+

>mRNA_P-littoralis_Contig1146.8.1 ID=mRNA_P-littoralis_Contig1146.8.1|Name=mRNA_P-littoralis_Contig1146.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig1146:39589..41290+ (Pylaiella littoralis U1_48)
ATGAGCATATACCATTGGGTCAACGGAAGCGACAGCGATGGTGGCGATGA
CTCTGACGACGACGAGGACGATGGTGATAGGCGAGAGGACAGCGAAGAGG
ATAGTGACATTAGTAGTCTCTTGTCGACGTCCTCTCCGGATGACAAGAGG
TCACTGAGGCAGAAGCAGCAGCAGGAAGAGAAAGAGGGGGAGGGTGATTA
CTCTAAAAAAAACGAGGGCGACGGGGGCGGCGGCGCGAAGAAGCGAGTGC
AGGGGAAGCAGCCGGATAAAGAGGAAGGGGGGGAGGGTGATTGCTCTAAA
ACAAACGACGGTGACGGGGCCCGTACCGCGAACAACAAGCGCACCAGTGG
CGGAAAAATTGACATGTGCAAGGGCCTCTACGAGGCTGGAAACAAGGCGG
GGGAGCGGTGTGGCTCTCGAGCCAAAGCCGACAATAACGGCTTCTGTGGT
CGCCACACAAGTCAGTATGATAAGGGTAGGGTGAAAAAACGCAAGTCAAG
GCCGTGTCGCGGCCCAGGTGGTGGTGCTGCGCAGGAACTGACGGACCCTA
TAGGAGACGATGATCTCAGTGAATGTGGCAGCGAAGGCGCATTTCCTGGT
GACCTGGCGGACTACGACGAGAATGGAGAGGCTAAGATTACGTTGGGAAA
GGGTGAGGCAGCCGTACAAGCCAGGGCGTTGAGGAACATTCCAGAAGGTT
GGGCGCGCGAGTCTTTGAAGTGCGTGTTCCTTTTGGTCCAAGCCACCGCG
CGGCTGGAAAAAGCCGGGAGATGA
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