mRNA_P-littoralis_Contig10.194.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.194.1
Unique NamemRNA_P-littoralis_Contig10.194.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:689198..689589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size394
Hectar predicted targeting categorysignal anchor
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.9843493-UTR-P-littoralis_Contig10:689197..6892171680789325.9843493-UTR-P-littoralis_Contig10:689197..689217Pylaiella littoralis U1_48UTRP-littoralis_Contig10 689198..689217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.9989033-CDS-P-littoralis_Contig10:689217..6895891680789325.9989033-CDS-P-littoralis_Contig10:689217..689589Pylaiella littoralis U1_48CDSP-littoralis_Contig10 689218..689589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.194.1prot_P-littoralis_Contig10.194.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 689218..689589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.194.1

>prot_P-littoralis_Contig10.194.1 ID=prot_P-littoralis_Contig10.194.1|Name=mRNA_P-littoralis_Contig10.194.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
ARCPFHCVCRRSLVGVGGVYISHFRPLNSHGKKRPKYIQHLFLAVLSQTI
LWLISIDGGFLGGVFECLEADWKQVAHAETVLNSLVRGVLFTALLLDLVK
FHGSLPDLAPRVSQPSWFPILPI*
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mRNA from alignment at P-littoralis_Contig10:689198..689589-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.194.1 ID=mRNA_P-littoralis_Contig10.194.1|Name=mRNA_P-littoralis_Contig10.194.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=392bp|location=Sequence derived from alignment at P-littoralis_Contig10:689198..689589- (Pylaiella littoralis U1_48)
GCGCGCTGCCCCTTCCATTGTGTTTGTCGTCGGTCCTTGGTCGGTGTGGG
TGGGGTGTACATCAGTCATTTCAGACCACTCAATTCACACGGAAAAAAAC
GCCCCAAGTATATACAACACTTGTTCTTGGCAGTTTTATCGCAGACCATA
CTTTGGCTGATATCGATCGACGGAGGTTTCCTTGGCGGAGTGTTTGAGTG
TCTTGAGGCTGATTGGAAACAGGTGGCGCATGCTGAAACTGTCCTCAACA
GTTTAGTTCGAGGCGTGTTATTTACCGCTCTCCTGTTGGATTTAGTCAAA
TTCCACGGGAGTCTGCCAGATCTGGCACCTCGCGTCTCACAACCCTCTTG
GTTTCCAATTTTACCCATATGACATCACGCGCTCCTCCGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:689198..689589-

>mRNA_P-littoralis_Contig10.194.1 ID=mRNA_P-littoralis_Contig10.194.1|Name=mRNA_P-littoralis_Contig10.194.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig10:689198..689589- (Pylaiella littoralis U1_48)
GCGCGCTGCCCCTTCCATTGTGTTTGTCGTCGGTCCTTGGTCGGTGTGGG
TGGGGTGTACATCAGTCATTTCAGACCACTCAATTCACACGGAAAAAAAC
GCCCCAAGTATATACAACACTTGTTCTTGGCAGTTTTATCGCAGACCATA
CTTTGGCTGATATCGATCGACGGAGGTTTCCTTGGCGGAGTGTTTGAGTG
TCTTGAGGCTGATTGGAAACAGGTGGCGCATGCTGAAACTGTCCTCAACA
GTTTAGTTCGAGGCGTGTTATTTACCGCTCTCCTGTTGGATTTAGTCAAA
TTCCACGGGAGTCTGCCAGATCTGGCACCTCGCGTCTCACAACCCTCTTG
GTTTCCAATTTTACCCATATGA
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