mRNA_P-littoralis_Contig1144.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1144.3.1
Unique NamemRNA_P-littoralis_Contig1144.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1144.3.1 vs. uniprot
Match: D7G975_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G975_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 7.990e-60
Identity = 111/188 (59.04%), Postives = 139/188 (73.94%), Query Frame = 2 
Query:  110 ETSFLFSNSGGEHGFTGSSDGSMYGHSCASKCITVAAMDWEDGTGANGTFADPETSSVAPYSSRGPCIVN----NETRRQPTTCATDHIMTSTVKSAVTDLFQPFVGTSASAPVAAAIATIIRAACYPKMVGYDQMMEMLTNYDYTIDYTSD--GTAETWGAEAGYGIISARKMLAWVEANCN-ACSG 652
            +  FL  +SGG  G T   DG++YGH+CA  C+ VAA++W++G G  G+F DPETS V  +SS GPCIV+     ETR +PTTCA D + TST        F  F+GTSASAPVAAAIATI+RAAC+P++V Y ++MEMLTNY+YT+DYT+D  G AETWG EAG+GIISA +MLAWVE NC+ ACSG
Sbjct:   85 DADFLLLSSGGIGGHT---DGNIYGHACAKNCVAVAAINWQEGDGPGGSFEDPETSRVEYFSSTGPCIVDPGSGKETREKPTTCAADGLATSTTG------FSEFLGTSASAPVAAAIATIVRAACFPRVVEYGEVMEMLTNYEYTVDYTNDADGAAETWGNEAGHGIISAAQMLAWVEENCSEACSG 263
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BLAST of mRNA_P-littoralis_Contig1144.3.1 vs. uniprot
Match: UPI001FE1201C (S8 family serine peptidase n=1 Tax=Actinokineospora enzanensis TaxID=155975 RepID=UPI001FE1201C)

HSP 1 Score: 54.7 bits (130), Expect = 8.190e-5
Identity = 71/218 (32.57%), Postives = 91/218 (41.74%), Query Frame = 2 
Query:   77 IVHYEGQTFDTETSFL---FSNSGGEHGFTGSSDGSMYGHSCASKCITVAA--------MDWEDGTGANGTFADPE----TSSVAPYSSRGP-----------------CIVNNETRRQPTTCATDHIMTSTVKSAVTDLFQPFVGTSASAPVAAAIATIIRAACYPKMVGYDQMMEMLTNYDYTIDYTSDGTAETWGAEAGYGIISARKMLAWVEAN 634
            IV Y GQ      S L   F +SGG   F  S+ G   GHS A    +VAA         D E G  AN T   P     TS++  +SS GP                      E R +P   A D + TS       D F PF GTSA+AP AAAIA ++ +   P +   D + E LT     +D    G    W   +G GI+ A ++L W  A+
Sbjct:  424 IVKYSGQNRYLSLSALRGRFVDSGGLKAF--STPGVTLGHSAARDAFSVAAAPADKALPFDLEPGDPANPTGPWPNSFSATSALERFSSDGPRRVFYQADGTPITPGNVAATGGELRHKPDLTAADGVRTSV------DGFDPFYGTSAAAPHAAAIAALVLSG-NPGLAPAD-VREALTRT--AVDLGPPG----WDGRSGAGILLADRVLDWTGAS 625
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1144.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G975_ECTSI7.990e-6059.04Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
UPI001FE1201C8.190e-532.57S8 family serine peptidase n=1 Tax=Actinokineospor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1144contigP-littoralis_Contig1144:13941..19959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G975
PFAMsFn3-like,Glyco_hydro_3,Glyco_hydro_3_C,Polysacc_lyase,WSC
Model size800
Max annot lvl2759|Eukaryota
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.18e-60
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
EC3.2.1.37
Descriptionprotein xylosyltransferase activity
Cds size789
COG categoryU
CAZyGH3
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1144.3.1prot_P-littoralis_Contig1144.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1144 13941..19949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789466.9006386-CDS-P-littoralis_Contig1144:13940..140711680789466.9006386-CDS-P-littoralis_Contig1144:13940..14071Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 13941..14071 -
1680789466.9165866-CDS-P-littoralis_Contig1144:14930..151141680789466.9165866-CDS-P-littoralis_Contig1144:14930..15114Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 14931..15114 -
1680789466.9291728-CDS-P-littoralis_Contig1144:17649..177471680789466.9291728-CDS-P-littoralis_Contig1144:17649..17747Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 17650..17747 -
1680789466.93846-CDS-P-littoralis_Contig1144:18255..184121680789466.93846-CDS-P-littoralis_Contig1144:18255..18412Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 18256..18412 -
1680789466.9491262-CDS-P-littoralis_Contig1144:18657..187891680789466.9491262-CDS-P-littoralis_Contig1144:18657..18789Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 18658..18789 -
1680789466.962032-CDS-P-littoralis_Contig1144:19532..196071680789466.962032-CDS-P-littoralis_Contig1144:19532..19607Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 19533..19607 -
1680789466.9733186-CDS-P-littoralis_Contig1144:19937..199491680789466.9733186-CDS-P-littoralis_Contig1144:19937..19949Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 19938..19949 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789466.98248-UTR-P-littoralis_Contig1144:19949..199591680789466.98248-UTR-P-littoralis_Contig1144:19949..19959Pylaiella littoralis U1_48UTRP-littoralis_Contig1144 19950..19959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1144.3.1

>prot_P-littoralis_Contig1144.3.1 ID=prot_P-littoralis_Contig1144.3.1|Name=mRNA_P-littoralis_Contig1144.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=263bp
MEIIDFIPFSEPETEGFSYYLQIVHYEGQTFDTETSFLFSNSGGEHGFTG
SSDGSMYGHSCASKCITVAAMDWEDGTGANGTFADPETSSVAPYSSRGPC
IVNNETRRQPTTCATDHIMTSTVKSAVTDLFQPFVGTSASAPVAAAIATI
IRAACYPKMVGYDQMMEMLTNYDYTIDYTSDGTAETWGAEAGYGIISARK
MLAWVEANCNACSGMERNQYGICSNGLAGIEATNSDGITACCPRGCNQCG
GSNCDTSGLLAGY
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mRNA from alignment at P-littoralis_Contig1144:13941..19959-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1144.3.1 ID=mRNA_P-littoralis_Contig1144.3.1|Name=mRNA_P-littoralis_Contig1144.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6019bp|location=Sequence derived from alignment at P-littoralis_Contig1144:13941..19959- (Pylaiella littoralis U1_48)
GAAGGTTTCGATGGAGATCATCGTAAGTACATTATGGCCTACTTCGTACT
TCGTATTATTGGCAATCATTCACTACGAGAAGCGTTTAACGGGTTGGGAT
ACTATTTGATATTTGAGCACAAATTAAGGATTGGCTGCGGATAAATTGTT
TGGCAAATAGGCTCCCTGCTCCTGTATGTCTGTAGCGCAAAATTTGAGTT
GACGGGGGGTTTGATCCTCGTCTTGTATAATCGATCTTCACAAACTTATC
ATAAATGGCTTACTGCACTCGCACTGCTCTTTCCAGGGTCCAACCGCCCC
GGATTTCTATTCCTCACTCCGTTGCCCTGCCTGCCGTCATAAATGTTTGC
AGGATTTTATTCCCTTCTCTGAACCCGAGACCGAGGGCTTCAGTTACTAT
CTTCAGATCGTCCACTACGAAGGCCAGGTGAGTCAGGAGACGCGGTGATT
ACTCTGACCAGTGGGGTTTATAGTGTCGCTGCTTGAAGCATTAAAAATAT
TGGTCAGGGCAAATATTCTCGAACTGCCAGATACTCTCGACGGTTTGTCG
TGGGTGGAGGACGCACCGGTACCCCGTCTGTGCAATGCAAAACACCGTGC
TCTGGGTCGGGTAGATCGTTTGCCCGAAGCAGATTCTTTTTTTCTTCGGC
GAGCATGTCGCGATCAATCCCCCGCAGAGATTGAAGACTTTTGTTGAACT
TTGTTAAGGCTAAAAATATAGGGTGTTGAAAATGTGGGGCCTCGTCTGTT
GGGTGTGCGTCCTCGAATCAGAATGACGAGGCCCCTCATACAACTATTTG
TAAAGTTGATCAAGTGTTCCGAGCGTCCCCACCGCAATGTGAGTTGGTGT
GGTGCGTTGGTATTGTGTCATGGGTTGTGCGTTGTACGGGGTGTACGGAC
GGGAAGCTCCGTTGAATATCCGTTAGAGGAGATGAAACTAATCGATAGCA
ATTTTACCCCCGGATCCCTTGTTCTTTCTGTGCGCACCTTTTGTCGCCAA
CATCGTCTTACCTGCTGGCGCTCGAAATTCGCGACACAAAGTGGAGATAT
GACGATGAACTATTTGAAGCAGGCAGACCATGCTTAGCCTGTTTTGACTG
GTGCAAACAACGTTCGTTGCCGGTTTCGACATACCAACGATGGTGCTCAT
TCGACTCCTCGCGATTGCAGACTTTTGATACCGAGACGAGCTTTCTTTTT
AGCAACAGTGGCGGAGAGCATGGATTCACGGGGAGCTCCGACGGAAGCAT
GTACGGTCACTCTTGCGCCTCCAAATGTATCACCGTTGCCGCCATGGACT
GGGTAAGTGACATGATGCACAACTGTCAAGAAAGTAAATTATCACTGTAC
CGGTATTGCCCGCGTGGGGATGCCAATTAAGCCCACCGTATACCTCAAGG
TGGGACAGTTCGTTGTTGCTTGGCACTCTGCTATAGCAGTAGGTATGCCG
TTCGAAATTCGCCCCTGACCTACACATGGTCGTCGGTCGTGGGACCGCTA
GCCCAATATCACCGCGACCGAAATGGTGCTGACTTGGGTCCTGGCAGGAG
GACGGAACTGGTGCGAACGGCACTTTCGCGGATCCTGAAACCAGCTCTGT
GGCACCATATAGCTCCCGAGGGCCGTGCATCGTCAACAACGAGACCCGCA
GACAGCCCACCACTTGCGCCACCGATCATATAATGACTTCAACAGTAAAA
TCAGGTATTATATGACATTAGGCGCAGCTAGGCAATCATTGTTGAAATAT
GACTTGCATCCGATTTGTGCTCTGTGGACATACATATGCTAATCAATCGA
TGAATTCAGCGCAAGGAGCTCATGAAGGTCGCTAACGCCGGACAAGCTTC
GCCCCCATCGGTTTTGGCTCCAACAGCTCAAATGCGTTAGAAAGAATAAA
AACAATGGGGGAAGAAGCCAGAAGGCTCATCGACTCTCAACATCAAAGCG
GGTATACATTTCTTCCGCAAATCTTGTTCACAATCAATCCGACGAGATGA
CAAAAAGCCACCATTAAGTAAAAGCAGTCAATTATTGCGTATATCGATCA
TACGGCAACCCCTTTCACGGCAGGGCAAACCCTTTTTACTGGTAGAATAA
CGTCGAGTACCTCTCGAATTGCGAAGAGTGAAATTCCTTCATGATCAGCG
CACATCCTACATGTTTCGGTGCCAAGTGAAGTGTGGACGGTATCCCTGTC
TTTATTGTATAGCTGTGACAGATTTGTTTCAGCCGTTCGTCGGCACCTCG
GCGTCGGCTCCGGTAGCAGCGGCCATCGCGACCATCATAAGAGCTGCATG
CTACCCCAAGGTATGGAGGTTGCGGGGGGAGGAACATCAAAAGTAGTTGG
GCTGGACCCAGGGACTTTGATCCATGCTACACCTGCAGGTCTAGCTAGCC
TTGTAACCTGTGTTGGATCGACAGGGCGTAAATTCCAGAAAGCTCAACGC
ACGCTGTTTGAGAAGCCGTTATTTTTATATTGCCTGAAAGACGATTTGGC
ATCAACCGATCCTTTGCACTTCGAAGTGCTGGAGTATATGGGGCTTCGCG
GTTTGTGTCTGACTCTTGATCGAAGACTGTAAAACAAAAATTACTATGCT
TGATTGTTGACGACTTATATGAAACTTATGTGAGTCAAGTTGTGGTCACC
TTGAGAACGATAGATGGTATGGGAGTTTTTTCATCGCACGAAACAAAAAA
TGTTCCAAAAGGTGCATGCCAAATCACTTGGATCGACCTCAAAAGGTTAT
CGATAGGCGCTTTGAACACGCTGCTTAACAGGCGGCCAAAGGGGTAGGTT
GGGGAGTATATGTCGGTCAACCTTGGGCTAGGATGAGGTTGCGGCACCGA
TGCCAACTTTTGCGGTTGGCTAATAAACTGGACCTAAACCCCTTTTGCTT
GCCGGGAAAAAAGTAACCTGGAACGTGTCAAACCCCTACAACCACAGTCG
GTAGGCAGGGGTCGACCCCCACTGTGTTGCGTCCTCACCGTCGAGATTCA
GTTACTTGCGTACCTCTATTGGTATTACACTTCACGCAAGACAACTATAA
GTCACGATTTTTCAGTCCACGTAGGACGCTTGAACGCTATTGATGCTGTC
GCCACGTGCTCTGCATGTCGGGCGAATATCGATCCGTGCTCATATAAAGA
AAAAAATCAGAAATAAATTGAATAAGAGTGCCTAAACCCTCGAGACACAT
TAATTATTGAAAAATTCATTTATATCTTCGTGTTTGTTCGAATAGAAACG
AAAATAATTTGCATTTCCGGGTTTTCTTTTCCCGACGAATGTTCGGAAAT
TGTTGATGAGCTGACCACAAACTGTGGAGGAAGGGCAAATTTATTTTGAT
GGCCAGTACGTCAACGATACAAACAGCAAACCCGTCTAATTGTTTTCGCA
CGAATTTCGGGAAGTCGTCGACGGGCTGACTGATGACAAATGTTCGGGGA
ATGGATTTTTTAACAATTCTGTCATGTTCACGTGGTTTGTTCGAATAGAA
ACAAACCACACGTCTGGTGCTTTTCTGGCGGTTTTGTTTTCGCACACATG
TTGGAAGAGAGTTGTTGATGGGCTGACCATAGATGGTCGAGGACTAATGC
GAAAATATGCAAAAGTATGTCTTTTTTTTCCGGTGTTCATGCTGTGCAAT
ACGCCTAGACTATTCTGTGATACCTGTCTTAGGCGGATTGGGTGGTTTGA
ATCCAGCTATAGGTACCATCATCTGGAAGTACCTTGGCCCATGTAAATAC
GAAGTCGTACCATATCAAGAATATCCACAGTTATGATAGTTCCGCGATCC
TTTTCGTGCTCTTCTCCTGCGTATGTACCAACTGACCGGCGAAAATCGAC
CAATCAACAAGTTTGGAAGTATTCGGATGTATTCAATAAGTGGACGAATA
CCATCTACGTAACTTTCTCTCGGCTCGCTATTCGGAAAAAATTGGTATGT
GCCTAAACTCGAAATTGCTTGCAGGCAAGGATACATCTCTCATCGCACGA
CCAGCAAGTAGCATCTCGAAGATTGACGCCCCCTACGCTCTGGTCACGTC
ACATTTAAATAACAGGATGACGGTCCTGGCGAACGTTCATAAACTTGGCG
CTCATCGTTTATTCCTGTAGCCTACACCGTTTTAGACACCCATATTGCAG
CAACACGATTCCAAAATCTTCATGAGCGTTAAAGCCAAATCAATAATTGT
CGTTCTGGGTGGGGTCTACGCCGCAGTGCGTTGGCGAAGATGACATGGCA
GAAATGGAGCAGGTCACAAAAGTTATACCGTCCAAAACCCGGTAACTGAT
GTCGAGAGGGTGTACCTGTGCCTATGCCTTCTATATCTTCATGGACATAA
AGTTTACCATTTGGTTCACGTAAGCCTGTCCTCCCGTGTGGCACGTGGGG
CGGAGTTGGAGCTTAGGATGTGACGTACAGCAGTTGCGTGTGCTGTTGAT
AATCGCGATGTTTGTGACCCAGGCAGCCAGTCTTTCGCATTTCTTCAAAG
ATAAAATGAAGTGTTGTCTTGTTCTGGTATGGTTCATGATGAACGAGACC
CACGCGGACTATCCGTCTTTATGTTAATCTCTCGGGAATAGTGTCTATTG
CGTTTATCAACGAAATGCCGGTGGTTGCTGCCGCACGACGGTACAAAGCT
GTGCAACAATATTACTGCGGGAAAACCCGTGCATGAAGAGCGTTGTTGTT
GTTGTTGAACTTGGCTCAGCAGACGTATTTTAAGCGACATTTTGACAACT
TTCCGCACGCCTGTGTGTTCACGCCGCCGCGCACAATGATGACGCCACCG
GCGGACTCATTGCCCTATTCGATTGTCGTTCGTTCTCATCAACAGATGGT
GGGGTACGATCAAATGATGGAGATGTTGACGAACTACGACTACACGATCG
ACTACACGTCCGATGGTACCGCTGAAACATGGGGGGCCGAAGCCGGTTAC
GGTATCATATCCGCTCGCAAGATGCTCGCGTGGGTAGAGGCTAACTGCAA
CGCCTGCTCAGGCATGGAGAGGAACCAATGTACGCTTCCCTTGGAGGTGT
TCCTTCCATGTACAATTATCGGACCGTTTTTTTCATCCTTACCCAGAGCG
AAGAACTGTTCCGTTTCTGAAAAAAACTGAGAGAAACACGTATAGCGAAT
AACAAGGGGTGGCTGACGGAGGAATCAAATCCACGACCTTACGCTGAACA
GGTTTTTTATGCTCAGACAGTGTGGGGTGCACTTTTTTTGTGTACCGAAC
CAACGACATGCACAGAAAATACCACTTGAGCTTGGGAACCCGCTTGGGAG
AGTTCCCGGAGAAGGATTAGTGTAGATGAAGAATACAGCAAACCCTTCGA
ATTAAGAAATTCGTGCCAAAGGGTTCTCGGAGAAGGAGTGTGTACCGATC
ACCTGGGTTTGGATACAGGTATTATCATGAACCTTTTATTTCACGCAAAA
CGTATCCTCTGCGTTGTATTTTTCTGGAATACATGTGCTTTCACCTGTTG
CTGTTGTATGTTGTGTGGTGGCATCACAACCAGTCCTCTCCATGCAATGT
CACCCTGTATGCTGTCTGTCGTACTGGAACCATCTCCGATGATCCCGAAT
GCAATTAATCCTAACCACAACAAGCACGCAAATCATGAGGGCTTTGAAAA
GAAAATATTATAAGAACTGCATCTTCTGACTTTGTTTTAGACAGAGGGGA
AGTACGCAAATGCGCATGGCTTTTTCTTTGCTTTTGTAGTGACTACCTTT
CATCTTTCCCGAATCAATGTACACCTGTCGTCGTACCTCGGATGTTCGAG
TGGCGATCTTTCCGGCCGTATCTGAAATGCTTGCGCGACTCCTCGTCAAC
ATCGCAACAATACTCTCGGCAATCACACGCAATTGAAGACGGAATATGCA
GCAACGGTCTGGCAGGCATCGAAGCAACTAACTCGGACGGCATCACTGCC
TGCTGCCCAAGAGGGTGCAACCAGTGCGGTGGAAGCAACTGCGATACCTC
CGGTTTGCTGGCGGGATAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1144:13941..19959-

>mRNA_P-littoralis_Contig1144.3.1 ID=mRNA_P-littoralis_Contig1144.3.1|Name=mRNA_P-littoralis_Contig1144.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig1144:13941..19959- (Pylaiella littoralis U1_48)
ATGGAGATCATCGATTTTATTCCCTTCTCTGAACCCGAGACCGAGGGCTT
CAGTTACTATCTTCAGATCGTCCACTACGAAGGCCAGACTTTTGATACCG
AGACGAGCTTTCTTTTTAGCAACAGTGGCGGAGAGCATGGATTCACGGGG
AGCTCCGACGGAAGCATGTACGGTCACTCTTGCGCCTCCAAATGTATCAC
CGTTGCCGCCATGGACTGGGAGGACGGAACTGGTGCGAACGGCACTTTCG
CGGATCCTGAAACCAGCTCTGTGGCACCATATAGCTCCCGAGGGCCGTGC
ATCGTCAACAACGAGACCCGCAGACAGCCCACCACTTGCGCCACCGATCA
TATAATGACTTCAACAGTAAAATCAGCTGTGACAGATTTGTTTCAGCCGT
TCGTCGGCACCTCGGCGTCGGCTCCGGTAGCAGCGGCCATCGCGACCATC
ATAAGAGCTGCATGCTACCCCAAGATGGTGGGGTACGATCAAATGATGGA
GATGTTGACGAACTACGACTACACGATCGACTACACGTCCGATGGTACCG
CTGAAACATGGGGGGCCGAAGCCGGTTACGGTATCATATCCGCTCGCAAG
ATGCTCGCGTGGGTAGAGGCTAACTGCAACGCCTGCTCAGGCATGGAGAG
GAACCAATACGGAATATGCAGCAACGGTCTGGCAGGCATCGAAGCAACTA
ACTCGGACGGCATCACTGCCTGCTGCCCAAGAGGGTGCAACCAGTGCGGT
GGAAGCAACTGCGATACCTCCGGTTTGCTGGCGGGATAC
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