mRNA_P-littoralis_Contig1144.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1144.1.1
Unique NamemRNA_P-littoralis_Contig1144.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1144.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1144contigP-littoralis_Contig1144:11423..12118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size403
Hectar predicted targeting categorysignal peptide
Exons2
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789466.8534799-CDS-P-littoralis_Contig1144:11422..117831680789466.8534799-CDS-P-littoralis_Contig1144:11422..11783Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 11423..11783 -
1680789466.8620338-CDS-P-littoralis_Contig1144:12077..121121680789466.8620338-CDS-P-littoralis_Contig1144:12077..12112Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 12078..12112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789466.873109-UTR-P-littoralis_Contig1144:12112..121181680789466.873109-UTR-P-littoralis_Contig1144:12112..12118Pylaiella littoralis U1_48UTRP-littoralis_Contig1144 12113..12118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1144.1.1prot_P-littoralis_Contig1144.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1144 11423..12112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1144.1.1

>prot_P-littoralis_Contig1144.1.1 ID=prot_P-littoralis_Contig1144.1.1|Name=mRNA_P-littoralis_Contig1144.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MMVVIAAAVLASTIPRKIAAYSATIVSTPMVTPRAPDPLVGGTCFMDSLL
SRITAVGCSSTFFYHSRVYVKVRVTSEMGSRWRSYVRKEQFFAGQIWRGR
WCLAQFIRAGSRVLDFGWLQERGSLSWSSYTE
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mRNA from alignment at P-littoralis_Contig1144:11423..12118-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1144.1.1 ID=mRNA_P-littoralis_Contig1144.1.1|Name=mRNA_P-littoralis_Contig1144.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=696bp|location=Sequence derived from alignment at P-littoralis_Contig1144:11423..12118- (Pylaiella littoralis U1_48)
GCGACTATGATGGTGGTGATTGCTGCCGCTGTTCTTGCGAGGTGGGCAAT
GAATCTTCCATGATGCTGGTTAGACCCGTGTAGCTTATAAGTCGGAGCAT
GGTGGACACTACGTTGGTTCTTGACGTGACGAAAGCAAGTGGAAGAAGTA
AAATTGCACAGGGAGTGAGCGGAACCGCATCGCTCATGTATGCGTTCCTG
GTTCACCTTTAGAGCGCAAAGCTTAGTCGACCCAGACTTGAAAAAATGGC
GATGTATCAAAATTTGACTTGCCAAGTGAACTACTGTGCCTTCGCCGCCT
CCTTTCAATGTTCTTGCTGCCCGTGTTCCTGACAGCACGATTCCAAGGAA
GATTGCGGCTTATTCGGCTACAATTGTCTCGACCCCAATGGTAACACCAC
GTGCACCTGATCCACTTGTGGGCGGCACGTGTTTCATGGACTCCTTATTG
TCGCGAATCACCGCGGTTGGCTGCAGCAGCACCTTCTTCTATCATAGTCG
AGTATATGTGAAAGTACGTGTGACGAGTGAGATGGGTTCTCGTTGGCGGT
CTTATGTGCGAAAGGAACAGTTTTTTGCTGGGCAAATATGGCGGGGTCGG
TGGTGCTTGGCCCAGTTTATACGTGCCGGCTCGCGTGTTCTGGATTTTGG
CTGGTTACAAGAGCGCGGTTCGCTCTCCTGGAGTAGCTACACGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1144:11423..12118-

>mRNA_P-littoralis_Contig1144.1.1 ID=mRNA_P-littoralis_Contig1144.1.1|Name=mRNA_P-littoralis_Contig1144.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig1144:11423..12118- (Pylaiella littoralis U1_48)
ATGATGGTGGTGATTGCTGCCGCTGTTCTTGCGAGCACGATTCCAAGGAA
GATTGCGGCTTATTCGGCTACAATTGTCTCGACCCCAATGGTAACACCAC
GTGCACCTGATCCACTTGTGGGCGGCACGTGTTTCATGGACTCCTTATTG
TCGCGAATCACCGCGGTTGGCTGCAGCAGCACCTTCTTCTATCATAGTCG
AGTATATGTGAAAGTACGTGTGACGAGTGAGATGGGTTCTCGTTGGCGGT
CTTATGTGCGAAAGGAACAGTTTTTTGCTGGGCAAATATGGCGGGGTCGG
TGGTGCTTGGCCCAGTTTATACGTGCCGGCTCGCGTGTTCTGGATTTTGG
CTGGTTACAAGAGCGCGGTTCGCTCTCCTGGAGTAGCTACACGGAA
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