prot_P-littoralis_Contig114.60.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig114.60.3
Unique Name	prot_P-littoralis_Contig114.60.3
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	308

Homology

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 412 bits (1058), Expect = 6.550e-141
Identity = 218/284 (76.76%), Postives = 236/284 (83.10%), Query Frame = 0

Query:    1 MGDRDTPSSCLFVSDLPSDITEKELERLFAGCHGFDSCRVRKDKNEHDVGFVEFWDTESASIAKDRFNGHDVKGHSIAVCHARPARKRHRADRTDTRDMDGXXXXXXXDGRNIYPIMNQGGHHR-TPSGG--GLQPPALAGVNAGYLGMG--GMGSIHAAQAYGMATPRLMQASTPMSAMGLPLGLPTDAHHTLYVEGVPGGVTERELSHIFRPFPGYISLRLRAKGGRSLGTTSMLANAEAICFVEFESSYHATIAKMGAADYRLDKVDRNSAILRIEYAKPK 279
            MGDRD PS  LFVSDLPSDITEKELERLFAGCHGF+SCRVRKDKNEHDVGFV+F DTESA+IAK+RF GH  +GH IAVC+ARPARKRHR +R+D RDMDG       D RN   +         TPSGG  G  P  L+ VN GYLGMG  G+G IHAAQAYGMATPRLMQAST MSAMGLPLGLP+DAHHTLYVEG+PG V+EREL+HIFRPFPGYISLRLRAKGGRSLG+ S  AN EAICFVEFESSYHATIAKMGAADYRLDK+DRNSA+LRIEYAK K
Sbjct:    1 MGDRDIPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIAVCYARPARKRHRPERSDARDMDGGG-----DSRNYQSMQXXXXXXXXTPSGGVGGGLPTNLSSVNTGYLGMGIGGIGGIHAAQAYGMATPRLMQASTAMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSAS--ANVEAICFVEFESSYHATIAKMGAADYRLDKIDRNSAVLRIEYAKSK 277

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: D7FXN5_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN5_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.370e-38
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0

Query:    1 MGDRDTPSSCLFVSDLPSDITEKELERLFAGCHGFDSCRVRKDKNEHDVGFVEFWDTESASIAKDRFNGHDVKGHSIAV 79
            MGDRDTPS  LFVSDLPSDITEKELERLFAGCHGF+SCRVRKDKNEHDVGFV+F DTESA+IAK+RF GH  +GH I  
Sbjct:    1 MGDRDTPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIGA 79

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: L8H910_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H910_ACACA)

HSP 1 Score: 113 bits (282), Expect = 2.530e-25
Identity = 100/289 (34.60%), Postives = 144/289 (49.83%), Query Frame = 0

Query:    8 SSCLFVSDLPSDITEKELERLFAGCHGFDSCRVRKDKNEHDVGFVEFWDTESASIAKDRFNG-----HDVKGHSIAVCHARPARKRHRA------------DRTDTRDMDGXXXXXXXDGRNIYPIMNQGGHHRTPSGGGLQPPALAGVNAG--YLGMGGMGSIHAAQAYGMATPRLMQASTPMSAMGLPLGLPTDAHHTLYVEGVPGGVTERELSHIFRPFPGYISLRLRAKGGRSLGTTSMLANAEAICFVEFESSYHATIAKMGAADYRLDKVDRNSAILRIEYAK 277
            S+ LF++++P ++TE E    F+   G+ S R+R+D+NE+ VGFVEF D +SA+ A+++FN      +D  G +I   H   +R +HR             D+  +      XXXXXXDG       +        SG  L P  ++ +  G   L M GM      Q Y    P    AS        P  L  DA  TLYVEG+P   TERE++HIFR  PGY+ +R++ K  +     S + N   +C+VEFE+ Y+A +A      Y++DK D     L I YAK
Sbjct:   45 STALFIAEIPLEVTEAEFRSTFSSEPGYISARLRRDRNENTVGFVEFSDHKSAAEAREQFNNFKFSHNDDHGITIHFAHEH-SRNKHRERDDGKHYGSQHYDQPSSSRKGYNXXXXXXDGYGSMRAADVNSRVSLTSGLPLVPMGVSPMMPGPTSLDMSGM------QFYSTVAPNAQFASYVQPQAYSPQ-LSPDAAPTLYVEGLPLDATEREVAHIFRQMPGYLGIRIKPKESKQ--HPSRVFN---LCWVEFETKYNAAVALHHLKGYKMDKNDTKG--LTISYAK 318

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.130e-25
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 0

Query:  175 MGLPLGLPTDAHHTLYVEGVPGGVTERELSHIFRPFPGYISLRLRAK-GGRSLGTTSMLANAEAICFVEFESSYHATIAKMGAADYRLDKVDRNSAILRIEYAKPKGGGG 283
            MGLPL LP DA  TLYVEG+P   +ERE++HIFRPFPGY SLR+R K   R  G         A+CFVEF+++Y A++AK+   DY++D+ D  +  L + YA+ + G G
Sbjct:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQ------RAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGRRGTG 104

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: A0A8J5XR47_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XR47_DIALT)

HSP 1 Score: 103 bits (257), Expect = 6.850e-21
Identity = 95/298 (31.88%), Postives = 129/298 (43.29%), Query Frame = 0

Query:    8 SSCLFVSDLPSDITEKELERLFAGCHGFDSCRVRKDKNEHDVGFVEFWDTESASIAKDRFNGHDVKG-------------HSIAVCHARPARKRHRADRTDTRDMDGXXXXXXXDGRNIYPIMNQGGHHRTPSGG---GLQPPALAGVNAGYLGMGGMGSIHAAQAYGMATP------------RLMQASTPMSAMGLPLGLPTDAHHTLYVEGVPGGVTERELSHIFRPFPGYISLRLRAKGGRSLGTTSMLANAEAICFVEFESSYHATIAKMGAADYRLDKVDRNSAILRIEYAK 277
            S+ LFV+DLPS++ E EL  +F    G+ + R+R DK+   VGFVEF   + A+ AK+  +G  V G              +I      PA KR R D                 G    P  N+  H R    G   G + P  A V A  L    +G    A  Y    P                A  P     L + +P  A  TLY++ VP   T+RELSHIFRP+ G+ S+RL AK  +  G          +CF EF++ +HAT A+     YR+DK D     L  ++AK
Sbjct:  477 SNTLFVADLPSEMKESELSGIFRHLRGYLTSRLRTDKSARVVGFVEFEVPDLAAAAKEMLDGQRVSGVPVPLRMQFAKPMRAIPQRSPLPAPKRAREDEPAA-----------GRGAGRSPPANRA-HARAHGDGDAYGYEVPPRAAVLA--LPPASLGYAPVAATYDPRAPPPHLAPLVXXXXXXXXAPAPER---LAMPIPPGASATLYIDNVPADATQRELSHIFRPYAGFQSVRLIAKEAKRAGEPHRW-----LCFAEFDNKFHATAARNHVQGYRMDKNDTRG--LGCDFAK 750

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: A0A5A7P711_STRAF (RNA-binding protein with multiple splicing n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P711_STRAF)

HSP 1 Score: 94.0 bits (232), Expect = 4.720e-19
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 0

Query:  169 STPMSAMGLP-LGLPTDAHHTLYVEGVPGGVTERELSHIFRPFPGYISLRLRAKGGRSLGTTSMLANAEAICFVEFESSYHATIAKMGAADYRLDKVDRNSAILRIEYAKPKG---GGGDR 285
            S P+   G P + LP DA  TLYVEG+PG  + RE+SHIFRPF GY  +RL  K  R  G  +++     +CFV+F S  HA  A      Y+ D+ DR+SAILR+++A+  G   GGG+R
Sbjct:  117 SRPIGVGGRPEIQLPPDATSTLYVEGLPGNCSRREVSHIFRPFVGYKEVRLVTKESRHSGGDTLV-----LCFVDFLSPAHAATAMDALQGYKFDEHDRDSAILRLQFARYPGARSGGGNR 232

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: A0A833QTM7_9POAL (RRM domain-containing protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QTM7_9POAL)

HSP 1 Score: 92.4 bits (228), Expect = 7.290e-18
Identity = 50/104 (48.08%), Postives = 66/104 (63.46%), Query Frame = 0

Query:  178 PLGLPTDAHHTLYVEGVPGGVTERELSHIFRPFPGYISLRLRAKGGRSL-GTTSMLANAEAICFVEFESSYHATIAKMGAADYRLDKVDRNSAILRIEYAKPKG 280
            PL LP DA  TLYVEG+P   T RE+SHIFRPF GY  +RL  K  + + G+T +L      CFV+F S  HA +A      YRLD  DR+S++LR+++A+  G
Sbjct:  214 PLSLPPDASSTLYVEGLPSNCTRREVSHIFRPFVGYREVRLVNKEPKHVKGSTHIL------CFVDFASPAHAAVALDALQGYRLDDHDRDSSVLRLQFARNPG 311

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: A0A7S0HWY9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HWY9_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.820e-17
Identity = 89/308 (28.90%), Postives = 127/308 (41.23%), Query Frame = 0

Query:    4 RDTPSSCLFVSDLPSDITEKELERLFAGCHGFDSCRVRKDKNEHDVGFVEFWDTESASIAKDRFNGHD-VKGHSIAVCHAR-----PARKRHRADRTDTRDMDGXXXXXXXDGRNIYPIMNQGGHHRTPSGGG------------LQPPALAGVNAGYLGMGGM-----------GSIHAAQAYGMATPRLMQASTPMSAMGLPLGLPTDAHHTLYVEGVPGGVTERELSHIFRPFPG--YISLRLRAKGGRSLGTTSMLANAEAICFVEFESSYHATIAKMGAADYRLDKVDRNSAILRIEYAKPKG 280
            R  PS+CLF+ +LP+D+T+  LER F G  GF   R RKD+N   VGFVEF   + A   +D   G    +G S  + ++      P R R   ++  +R MD           N        G     S GG                     + G                  G ++              A + +    L   LP DA  TLYVEG+P   TERE++HIFR F G  Y S+R+ A+        ++      +CFVEF++ + AT        YR+DK    + + +I +AK KG
Sbjct:    3 RAPPSNCLFLPELPADLTDATLERHFRGFVGFQVARTRKDRNSKLVGFVEFDAVDDAVRCRDSMQGTSPFEGISWHIHYSNNTKGTPKRPREEMEQPVSR-MDAQRPAMYDRPNNQXXXXXXXGAPMMQSPGGGYGXXXXXXXXXXXXXXXXXXHHGXXXXXXXXXXXXXXXXXXGPMYQPMXXXXXXXXXXPAGSSIPPNYLSAQLPRDASSTLYVEGLPSDATEREVAHIFRRFEGHGYQSIRMLARESSKTPGKNLY-----LCFVEFDNPHQATACLHQMQGYRVDKAIEGAGV-KISFAKSKG 303

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: A0A6I9T1T3_SESIN (RNA-binding protein 1-like isoform X1 n=3 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9T1T3_SESIN)

HSP 1 Score: 88.6 bits (218), Expect = 3.900e-17
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 0

Query:  181 LPTDAHHTLYVEGVPGGVTERELSHIFRPFPGYISLRLRAKGGRSLGTTSMLANAEAICFVEFESSYHATIAKMGAADYRLDKVDRNSAILRIEYAKPKG---GGGDR 285
            LP DA  TL+VEG+P   T RE+SHIFRPF GY  +RL  K  R  G   ++     +CFV+FES  HA  A      Y+ D+ DR+SA LR+++A+  G   GGG R
Sbjct:  122 LPPDASSTLFVEGLPANCTRREVSHIFRPFVGYKEVRLVTKESRHPGGDPLV-----LCFVDFESPAHAATAMDALQGYKFDEHDRDSAHLRLQFARYPGARSGGGHR 224

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BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Match: UPI000C1D09AE (RNA-binding protein 1-like isoform X2 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D09AE)

HSP 1 Score: 88.6 bits (218), Expect = 5.290e-17
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 0

Query:  179 LGLPTDAHHTLYVEGVPGGVTERELSHIFRPFPGYISLRLRAKGGRSLGTTSMLANAEAICFVEFESSYHATIAKMGAADYRLDKVDRNSAILRIEYAKPKG---GGGDR 285
            + LP DA  TL+VEG+P   T RE+SHIFRPF GY   RL  K  R  G  +++     +CFV+F S  HA  A      YR D+ DR+SA LR+++A+  G   GGG R
Sbjct:  136 IALPPDASSTLFVEGLPANCTRREVSHIFRPFVGYKEARLVTKDSRRSGGDALV-----LCFVDFVSPAHAATAMDALQGYRFDEHDRDSAHLRLQFARYPGARSGGGHR 240

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot

BLAST of mRNA_P-littoralis_Contig114.60.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L4C0_9PHAE	6.550e-141	76.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FXN5_ECTSI	3.370e-38	82.28	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
L8H910_ACACA	2.530e-25	34.60	RNA recognition motif domain containing protein n=...	[more]
A0A835Z002_9STRA	5.130e-25	49.09	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A8J5XR47_DIALT	6.850e-21	31.88	Uncharacterized protein n=1 Tax=Diacronema lutheri...	[more]
A0A5A7P711_STRAF	4.720e-19	45.45	RNA-binding protein with multiple splicing n=1 Tax...	[more]
A0A833QTM7_9POAL	7.290e-18	48.08	RRM domain-containing protein n=1 Tax=Carex little...	[more]
A0A7S0HWY9_9EUKA	1.820e-17	28.90	Hypothetical protein (Fragment) n=1 Tax=Phaeocysti...	[more]
A0A6I9T1T3_SESIN	3.900e-17	46.30	RNA-binding protein 1-like isoform X1 n=3 Tax=Sesa...	[more]
UPI000C1D09AE	5.290e-17	45.45	RNA-binding protein 1-like isoform X2 n=1 Tax=Olea...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 10..80 e-value: 7.7E-12 score: 55.3 coord: 188..274 e-value: 0.017 score: 22.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 189..253 e-value: 1.0E-4 score: 22.1 coord: 11..77 e-value: 1.0E-13 score: 50.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 9..84 score: 13.123163
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 187..278 score: 10.257856
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 182..307 e-value: 6.3E-14 score: 54.1 coord: 2..125 e-value: 5.0E-21 score: 77.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..307
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..307
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 158..280 coord: 8..83
None	No IPR available	CDD	cd00590	RRM_SF	coord: 11..80 e-value: 4.03807E-15 score: 66.9449
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..221

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig114	contig	P-littoralis_Contig114:389221..410096 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig114.60.3	mRNA_P-littoralis_Contig114.60.3	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig114 388994..411115 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig114.60.3 ID=prot_P-littoralis_Contig114.60.3|Name=mRNA_P-littoralis_Contig114.60.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=308bp
MGDRDTPSSCLFVSDLPSDITEKELERLFAGCHGFDSCRVRKDKNEHDVG
FVEFWDTESASIAKDRFNGHDVKGHSIAVCHARPARKRHRADRTDTRDMD
GGGGGGGGDGRNIYPIMNQGGHHRTPSGGGLQPPALAGVNAGYLGMGGMG
SIHAAQAYGMATPRLMQASTPMSAMGLPLGLPTDAHHTLYVEGVPGGVTE
RELSHIFRPFPGYISLRLRAKGGRSLGTTSMLANAEAICFVEFESSYHAT
IAKMGAADYRLDKVDRNSAILRIEYAKPKGGGGDRGGGGGGRGRDRGGED
RGDRDRY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf