mRNA_P-littoralis_Contig1139.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1139.14.1
Unique NamemRNA_P-littoralis_Contig1139.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1139.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1139contigP-littoralis_Contig1139:40012..40546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size486
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789462.1339483-CDS-P-littoralis_Contig1139:40011..402401680789462.1339483-CDS-P-littoralis_Contig1139:40011..40240Pylaiella littoralis U1_48CDSP-littoralis_Contig1139 40012..40240 +
1680789462.1426632-CDS-P-littoralis_Contig1139:40289..404621680789462.1426632-CDS-P-littoralis_Contig1139:40289..40462Pylaiella littoralis U1_48CDSP-littoralis_Contig1139 40290..40462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789462.1513505-UTR-P-littoralis_Contig1139:40462..405461680789462.1513505-UTR-P-littoralis_Contig1139:40462..40546Pylaiella littoralis U1_48UTRP-littoralis_Contig1139 40463..40546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1139.14.1prot_P-littoralis_Contig1139.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1139 40012..40462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1139.14.1

>prot_P-littoralis_Contig1139.14.1 ID=prot_P-littoralis_Contig1139.14.1|Name=mRNA_P-littoralis_Contig1139.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
QPVTLFQNGEFSSPVSLISCFTLFATKRLLTKYFLCCDASRNPRESLLGG
HLYTSLRALYVSYCTYCTVFESIKVLWDYLPTRWCTLQTTLAYVDEVCSS
EVKGSDLNGPMKRTNCLHNVYIHMIAPSMLGNF*
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mRNA from alignment at P-littoralis_Contig1139:40012..40546+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1139.14.1 ID=mRNA_P-littoralis_Contig1139.14.1|Name=mRNA_P-littoralis_Contig1139.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=535bp|location=Sequence derived from alignment at P-littoralis_Contig1139:40012..40546+ (Pylaiella littoralis U1_48)
CAACCGGTAACGCTTTTCCAAAACGGTGAGTTCAGTTCTCCGGTTTCCCT
TATCTCTTGCTTCACTCTCTTCGCCACGAAGCGCCTCCTTACGAAATATT
TCTTGTGTTGTGACGCCTCTCGCAACCCACGCGAGAGCCTCCTTGGCGGG
CATCTTTATACCAGTCTTCGCGCTTTGTATGTATCATACTGTACGTACTG
TACTGTGTTTGAATCAATCAAGGTATTATTGAATCCCCCTTCCTTTGTTT
TGGGGGGATGGCTGTTTGTTGGTTCTTAGGGATTATCTGCCCACGCGCTG
GTGCACATTGCAGACAACACTTGCGTATGTAGACGAAGTTTGTTCAAGTG
AAGTGAAGGGAAGTGATTTGAATGGTCCCATGAAGCGAACCAATTGCCTC
CATAATGTCTACATACATATGATAGCACCCAGTATGTTAGGCAATTTCTA
GGGCTCTTGCAATTTTTCGTCGGTAAAGATGACCACGGTATGGGAAGGAA
TCGGAGAATGGTGTCACCTACAGTCACCGACCAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1139:40012..40546+

>mRNA_P-littoralis_Contig1139.14.1 ID=mRNA_P-littoralis_Contig1139.14.1|Name=mRNA_P-littoralis_Contig1139.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1139:40012..40546+ (Pylaiella littoralis U1_48)
CAACCGGTAACGCTTTTCCAAAACGGTGAGTTCAGTTCTCCGGTTTCCCT
TATCTCTTGCTTCACTCTCTTCGCCACGAAGCGCCTCCTTACGAAATATT
TCTTGTGTTGTGACGCCTCTCGCAACCCACGCGAGAGCCTCCTTGGCGGG
CATCTTTATACCAGTCTTCGCGCTTTGTATGTATCATACTGTACGTACTG
TACTGTGTTTGAATCAATCAAGGTATTATGGGATTATCTGCCCACGCGCT
GGTGCACATTGCAGACAACACTTGCGTATGTAGACGAAGTTTGTTCAAGT
GAAGTGAAGGGAAGTGATTTGAATGGTCCCATGAAGCGAACCAATTGCCT
CCATAATGTCTACATACATATGATAGCACCCAGTATGTTAGGCAATTTCT
AG
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