mRNA_P-littoralis_Contig10.171.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.171.1
Unique NamemRNA_P-littoralis_Contig10.171.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:630901..633101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size257
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.6735258-CDS-P-littoralis_Contig10:630900..6309991680789325.6735258-CDS-P-littoralis_Contig10:630900..630999Pylaiella littoralis U1_48CDSP-littoralis_Contig10 630901..630999 -
1680789325.6826463-CDS-P-littoralis_Contig10:632945..6331011680789325.6826463-CDS-P-littoralis_Contig10:632945..633101Pylaiella littoralis U1_48CDSP-littoralis_Contig10 632946..633101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.171.1prot_P-littoralis_Contig10.171.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 630901..633101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.171.1

>prot_P-littoralis_Contig10.171.1 ID=prot_P-littoralis_Contig10.171.1|Name=mRNA_P-littoralis_Contig10.171.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
SGGDQGFWHLPHTHVGPHTSARGPRAEAKPLGSPEHCTSGASSPRFSDGR
FATWRRKMCETPPKPERLRLKTCRLFRRDGCSPR*
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mRNA from alignment at P-littoralis_Contig10:630901..633101-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.171.1 ID=mRNA_P-littoralis_Contig10.171.1|Name=mRNA_P-littoralis_Contig10.171.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2201bp|location=Sequence derived from alignment at P-littoralis_Contig10:630901..633101- (Pylaiella littoralis U1_48)
TCGGGCGGGGATCAGGGATTCTGGCACCTTCCACACACACACGTCGGCCC
TCACACCTCGGCACGCGGTCCACGCGCGGAGGCGAAACCTCTTGGGTCAC
CTGAGCATTGCACCAGTGGAGCCTCGAGTCCAAGGTTCAGCGACGGAAGG
TTCGCGGTGAGTGCAAAAATCGTATTTTCTAGGGTCTCACAGGCGGCCCC
TTCTGACCCCGGCTTCCGACTACCCTCTCTAGCACGACAGCGTGCTCCTT
CCACAGCGGTGGCAAGTGTAGGCTCGCCCATCCCAGCCGTTCGCCATACT
CATGATCTACTCTCGGGAGCAATCCGCGTGGGAAACGATCGTGTGTGGGC
GAAGATATCAACACATACATACATGGGCACATGTCATATTCGGTTAGCGT
TACGCCGCACCAACAGGCGCACGCGGTGCTGTTTTTTGTTTTTGCTTGTA
TCTTTTTTCGAAAGTATGGGCGACCTGGAGGAAGGCCCTGATGGGTATAA
TGCTACTATTAATGTACTATGGAGTATGACTACAAATTCGCTATAAATTC
GCTACACGTATACGATATATAGTCATACTCCATAGGTGCCAATGTGTCCC
CTCTTGTGCTATCTTGTGCGTAAGAGGGGGTAGTTGTGAGTGTAGGACCC
CGTCGTGCATGCTGGGATTTTTCACTTTAGGGCGGGCCTTGGACATTTTC
TCGTGTATAGCACTGCTGCACTTGCTGCGGCAGTTCAGCATCAGTTGCCC
GTCCGTAGGTAGTCGTGCCCTCAAAGTTTGCCAATTTTTTCGTGGGTCCA
AATCTCGCAGCAGTACAGGACGTGAGGCGGTTTCTTGTAGGGCCGGATTT
TTTTCATTTTTTGATAGAATCCGAACGAACTTTCCGGCCAACGGTTGCCG
ATCCGCTGTTCTTATAGGTAAATAGGTGTTCGGTTTTCGGTGATCCCTTT
TTTTGAGGATGTGGTTGAAGAGTCGGCTCCAGAGTGTATCTGCATCGAAG
GACCGCAGGATGGTGTTTTTTGCGCTGAAACCCGTTTGCATCGCCGCCCG
TAACTTTCGAACGAATGAAGACACAGCAATGACGAAGGCATCTTCCGTGA
GCTGTGTATATGATCCCCCTCGTGTCGTGATCGCTTGGGTTAGGGTTACA
TCCGTACATTCGCAACGTAGGTTTGCTCATGGCCAACTCATGCGAAACAA
ATTGAGAAAGATGTATCAGCCGGACTGCTGTACAGCAGCATTATTATATA
CTGCTGTATGTATAGTAGTTGTACAGCAGTAGAGAAAGGAGATGACAGCC
CGTGTTCTTTTTTACAACACAACAACATGCCACAGCCACGAGCGATGACC
ATTTTGCGAACATGCCAGTGTAATCCTCACCCAAACGATTACCACACGAG
GGAGCCACGCACAGCTCACGAGAGATGGGCTTGTCATCGCTGTGGCTTCA
TTCATTGGGGAGTTACGAGGGAAGATGCAACTTGTGGTCTCTCTCAGAGG
AAGCTTTGATACTCCTCCTCCTGCTGCTGCTGCTGTGCTGATGATCCTGC
TGCTACATACGGTTGATTTTGGTTGCTGATGAACACGATGGAATGAACGA
TGACACGGCAAGCGCACGCAGAAAGATGGTGGACACATGTTATGTATGGA
CAGCAGCAAGCAGTAGTAGCAGCAGCAGGAGCAGCAGCTGCAACAACACA
GAAAGTAGTAGCAGAGCTCTCCTCCTCTGATGCTCTGTTGTGATTAATAT
CGTTTGTTTTGTCCACACACAAAGAGAGATAACTTCACACATTTTTTTTA
TATATTTTCCGATCGTATTTTCCGAACCGATCCAGCGTTCGGAAAATGTC
CGATTTTCCGAACGTGATCCGATTAAAAGCTGTTCGGAAAATTTTGTTCG
GAAAATGTTGTTCGGAAAAAGGTGTTTTCCGAGCCTAAAGAAGCCTTGAC
TCTAAAAAATTCGGAATCTATCAAAAAATGAATAAAATATCCGGCCCTGC
AAGAAACCGCCTAAGCCCTGAAAAGACTGGCGTGGTATTGCTTCATCACG
AAGGTATACTCATTCATGCCTAAATATGTACGTCGAACGTTAGGTTGTTC
AGACATGGAGACGGAAGATGTGCGAGACGCCGCCGAAGCCGGAGCGGCTG
CGGTTGAAGACATGTCGCCTGTTCCGGCGAGACGGATGTTCGCCGAGGTA
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:630901..633101-

>mRNA_P-littoralis_Contig10.171.1 ID=mRNA_P-littoralis_Contig10.171.1|Name=mRNA_P-littoralis_Contig10.171.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig10:630901..633101- (Pylaiella littoralis U1_48)
TCGGGCGGGGATCAGGGATTCTGGCACCTTCCACACACACACGTCGGCCC
TCACACCTCGGCACGCGGTCCACGCGCGGAGGCGAAACCTCTTGGGTCAC
CTGAGCATTGCACCAGTGGAGCCTCGAGTCCAAGGTTCAGCGACGGAAGG
TTCGCGACATGGAGACGGAAGATGTGCGAGACGCCGCCGAAGCCGGAGCG
GCTGCGGTTGAAGACATGTCGCCTGTTCCGGCGAGACGGATGTTCGCCGA
GGTAA
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