mRNA_P-littoralis_Contig1138.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1138.3.1
Unique NamemRNA_P-littoralis_Contig1138.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1138.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1138contigP-littoralis_Contig1138:4959..7801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1461
Hectar predicted targeting categoryother localisation
Exons4
Cds size1461
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789461.8329043-CDS-P-littoralis_Contig1138:4958..50831680789461.8329043-CDS-P-littoralis_Contig1138:4958..5083Pylaiella littoralis U1_48CDSP-littoralis_Contig1138 4959..5083 +
1680789461.842607-CDS-P-littoralis_Contig1138:5295..53501680789461.842607-CDS-P-littoralis_Contig1138:5295..5350Pylaiella littoralis U1_48CDSP-littoralis_Contig1138 5296..5350 +
1680789461.8516388-CDS-P-littoralis_Contig1138:5917..69641680789461.8516388-CDS-P-littoralis_Contig1138:5917..6964Pylaiella littoralis U1_48CDSP-littoralis_Contig1138 5918..6964 +
1680789461.8597252-CDS-P-littoralis_Contig1138:7567..78011680789461.8597252-CDS-P-littoralis_Contig1138:7567..7801Pylaiella littoralis U1_48CDSP-littoralis_Contig1138 7568..7801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1138.3.1prot_P-littoralis_Contig1138.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1138 4959..7801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1138.3.1

>prot_P-littoralis_Contig1138.3.1 ID=prot_P-littoralis_Contig1138.3.1|Name=mRNA_P-littoralis_Contig1138.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=487bp
MQSVRALVKTATLRGFGGGRVPEAKAAIAQHDAVQKRLSDVRDASVAWLS
EMARRALVEKRRIAARQYSLKISLDNARAEASAHAKTVEDQRQVAIIEAH
RVERALESVQAERDAALESRDKALAKAASASAEAASTAHALEKQNHLATL
MQNSLTAEVDRAHKGWEQSRAEAATLSRTIDRQHREAMDETARFADTTKH
LEYTIERLTESVSVLTQANANIEESFSSARSVWEIELGAAVQSMQAAGAR
ASVLHEALNEQQRAADTEAEGEKLALQSMTGHLDSAMRARDDAVAQTEDL
KLIQTNLEAEVERALSGWEACRMDAARLHRILAEQDQHVFAEAGRYQETV
EALTATVTLLRGTIRDHANLFVSAKDSWRGEYGSALASTEAANRRAEEMS
MTIFELTNKEPLESDSETAEDTSDTASPSNASAKPGESMGRTDDSIGGSP
TAEEMHPPEEPHGGDGGGGGGGGFEGAAWTSDDDAG*
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mRNA from alignment at P-littoralis_Contig1138:4959..7801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1138.3.1 ID=mRNA_P-littoralis_Contig1138.3.1|Name=mRNA_P-littoralis_Contig1138.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2843bp|location=Sequence derived from alignment at P-littoralis_Contig1138:4959..7801+ (Pylaiella littoralis U1_48)
ATGCAGAGCGTTCGAGCTCTCGTCAAAACAGCGACCCTGAGGGGCTTTGG
CgGGGGACGGGTCCCTGAGGCGAAGGCGGCCATCGCGCAGCATGACGCTG
TGCAGAAGAGACTGTCCGACGTACGGTGAGTGTGCTTGCGGATACAGGCT
GTGACTGTTCGTATCACACGGCATGCAAGGTTTTACTATCGTTGCAGTAG
CATTGTTGGAGAGAGGCGTTGCGCAAAAATTAAAAATTGCGATTACCATT
TTCATGGTTTTGTTTTGTGATGATGGCGGTCGTGATGATATGTCCCACTG
TCCCTTTGTTTTTGTCTGCCGTTACCGCGTGACTCAGGGATGCGAGCGTG
GCCTGGTTGTCTGAGATGGCGCGTCGTGCGCTGGTCGAGAAGGTACGCCT
GTAGTCATGTTTGGTGCCTCCTGCCGTCACACCAGATGTGAATGTTTGCA
CTAGGTCAGAGGGTGGAATGCATAGGCACTGGTATCCTGTTGGTCGACTT
GGCCCTTACTCCTTGAGTGGCCGGCACGTTGACGAGCATGTTGTTGCTGT
TGGGTAGTTAGGTTGTGATCTGCTGCTGCCATTTTTTGCTCTCACCGGAA
ACCGAAATATCCATGAAAATAGATCCACAAAAAACCCTTTTGGAGCGTAC
GCTCTGGTGCGCTCCTGACGCGCAGGGATCGTGTTGGCTGTGGGCATTGT
TTATGGCGATATTCCGGTGGCAGACAAGTTCGAACTCTTTCCCCGATCGC
ATTTTTTCCGGTCGGCACTCCAGTCGAAAGCAAACATGATACCACAATCG
CCAagGGATGCGCGGCCAATGGTTGAATGCCTCCAGCGAGGCAAGCAACC
GCCGCAATAACAAAATGATACCGGTTCACCTCGAATAATCGTCCCCCCCC
CGGAACTGACCGCTCCCGCTCCATGAAACGCGCCGTTCTCCGAATCGAAA
TCAAACTAGAGGAGAATTGCGGCGAGGCAGTACTCGCTGAAGATCAGCCT
CGACAACGCCCGCGCCGAAGCATCCGCTCACGCCAAGACTGTCGAGGACC
AACGGCAGGTTGCCATCATCGAGGCCCACCGAGTGGAGCGCGCGCTCGAG
TCGGTGCAAGCTGAACGTGACGCAGCTCTTGAGAGCCGCGACAAAGCTTT
AGCGAAAGCAGCCTCTGCCTCAGCTGAAGCAGCTTCTACGGCGCACGCTC
TCGAAAAGCAGAATCATCTCGCAACCTTGATGCAGAATAGCCTTACGGCG
GAGGTTGACAGGGCTCACAAAGGCTGGGAACAGAGTCGAGCAGAAGCGGC
TACCCTCAGCCGGACGATCGACAGACAGCACCGCGAGGCGATGGATGAGA
CGGCGCGATTCGCGGATACCACCAAGCACCTCGAATACACGATCGAGCGC
CTCACGGAGTCTGTTTCCGTCCTTACACAGGCCAACGCGAACATCGAAGA
AAGCTTCTCTTCAGCGAGGAGCGTGTGGGAAATTGAACTTGGCGCAGCGG
TCCAGAGCATGCAAGCGGCAGGCGCGAGGGCTAGCGTTCTTCACGAGGCA
CTCAACGAGCAGCAGCGCGCAGCCGACACCGAGGCCGAAGGGGAAAAATT
GGCTCTCCAGTCGATGACAGGTCATCTCGACAGCGCGATGAGGGCCCGCG
ACGATGCCGTCGCTCAAACCGAAGACCTGAAGCTGATCCAGACCAACCTG
GAGGCTGAAGTAGAGCGGGCTCTCAGTGGGTGGGAAGCCTGTCGGATGGA
CGCTGCCCGGTTGCATAGGATACTCGCGGAGCAAGACCAGCACGTCTTCG
CAGAAGCTGGGCGTTACCAAGAAACCGTTGAAGCGCTTACCGCAACAGTC
ACCTTGTTGCGGGGAACGATTAGGGATCACGCTAACCTCTTCGTGTCCGC
AAAGGACAGCTGGAGGGGGGAGTATGGCTCGGCTCTAGCGAGCACGGAAG
CCGCCAACCGCCGTGCTGAGGAGATGTCCATGACCATCTTCGAGCTTACT
AATAAGGTGATAGACGATGGCGAATGGCAAAAAATGCATGAAGTCTGGGG
TATTCACCCCTGAAAAAATGGTGGTAGGCTCTGGTTTTTGAAGAGGCAAA
GCGGTTGCGTAGATGGCGTAATACCGATTCCTCGCCTGTTTGCAACATCG
GATGGAAGAAATATTGTGCAATCGATACGAGGAGTCAACTTTATCCTATA
GATGCGGACCCGACGTAGGTATGTCCTTGTACCCAAATTGGTTTTTCTCA
GTGCGGTCTATCTCTCGCCCCTCATGCGCTGCGGCTTTTCGTCTTTATTT
TGTTATTTTTCTTTGAGCCTACCTACAGTAGTTCACATGAAGGTAACGCC
AGGCCGGCGGCAGCGCATCCATTGGAACAGATACTTTTCTCAGCGACCGG
CAGACCTCTCTCTGCCTTGCTTTGAGATATTCTTGACGCTTGCGCCACGC
GTGCCGGTGTTGGGGTTGTTGCCGCCTGCTGCTGCGTATGGCATAGCTGT
CGGGCTTGCTGCGCACATCCGATACAAGGCCGTAGTGTGTGCTTCGTCCG
ATGCCCACCCCAATACTCAAGCTACGTCTTGCTCTCTTGTTGACCCCCGC
TTTGTTCAGGAACCGCTGGAAAGCGACTCCGAGACCGCCGAGGACACGAG
CGACACCGCGTCGCCATCAAACGCTTCCGCCAAGCCTGGCGAAAGCATGG
GCCGCACCGACGACAGCATCGGCGGTAGCCCAACCGCGGAGGAGATGCAC
CCACCAGAGGAACCCCACGGCGGGGACGGTGGGGGAGGGGGTGGGGGTGG
CTTCGAAGGTGCAGCTTGGACGAGCGACGATGATGCCGGCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1138:4959..7801+

>mRNA_P-littoralis_Contig1138.3.1 ID=mRNA_P-littoralis_Contig1138.3.1|Name=mRNA_P-littoralis_Contig1138.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1461bp|location=Sequence derived from alignment at P-littoralis_Contig1138:4959..7801+ (Pylaiella littoralis U1_48)
ATGCAGAGCGTTCGAGCTCTCGTCAAAACAGCGACCCTGAGGGGCTTTGG
CgGGGGACGGGTCCCTGAGGCGAAGGCGGCCATCGCGCAGCATGACGCTG
TGCAGAAGAGACTGTCCGACGTACGGGATGCGAGCGTGGCCTGGTTGTCT
GAGATGGCGCGTCGTGCGCTGGTCGAGAAGAGGAGAATTGCGGCGAGGCA
GTACTCGCTGAAGATCAGCCTCGACAACGCCCGCGCCGAAGCATCCGCTC
ACGCCAAGACTGTCGAGGACCAACGGCAGGTTGCCATCATCGAGGCCCAC
CGAGTGGAGCGCGCGCTCGAGTCGGTGCAAGCTGAACGTGACGCAGCTCT
TGAGAGCCGCGACAAAGCTTTAGCGAAAGCAGCCTCTGCCTCAGCTGAAG
CAGCTTCTACGGCGCACGCTCTCGAAAAGCAGAATCATCTCGCAACCTTG
ATGCAGAATAGCCTTACGGCGGAGGTTGACAGGGCTCACAAAGGCTGGGA
ACAGAGTCGAGCAGAAGCGGCTACCCTCAGCCGGACGATCGACAGACAGC
ACCGCGAGGCGATGGATGAGACGGCGCGATTCGCGGATACCACCAAGCAC
CTCGAATACACGATCGAGCGCCTCACGGAGTCTGTTTCCGTCCTTACACA
GGCCAACGCGAACATCGAAGAAAGCTTCTCTTCAGCGAGGAGCGTGTGGG
AAATTGAACTTGGCGCAGCGGTCCAGAGCATGCAAGCGGCAGGCGCGAGG
GCTAGCGTTCTTCACGAGGCACTCAACGAGCAGCAGCGCGCAGCCGACAC
CGAGGCCGAAGGGGAAAAATTGGCTCTCCAGTCGATGACAGGTCATCTCG
ACAGCGCGATGAGGGCCCGCGACGATGCCGTCGCTCAAACCGAAGACCTG
AAGCTGATCCAGACCAACCTGGAGGCTGAAGTAGAGCGGGCTCTCAGTGG
GTGGGAAGCCTGTCGGATGGACGCTGCCCGGTTGCATAGGATACTCGCGG
AGCAAGACCAGCACGTCTTCGCAGAAGCTGGGCGTTACCAAGAAACCGTT
GAAGCGCTTACCGCAACAGTCACCTTGTTGCGGGGAACGATTAGGGATCA
CGCTAACCTCTTCGTGTCCGCAAAGGACAGCTGGAGGGGGGAGTATGGCT
CGGCTCTAGCGAGCACGGAAGCCGCCAACCGCCGTGCTGAGGAGATGTCC
ATGACCATCTTCGAGCTTACTAATAAGGAACCGCTGGAAAGCGACTCCGA
GACCGCCGAGGACACGAGCGACACCGCGTCGCCATCAAACGCTTCCGCCA
AGCCTGGCGAAAGCATGGGCCGCACCGACGACAGCATCGGCGGTAGCCCA
ACCGCGGAGGAGATGCACCCACCAGAGGAACCCCACGGCGGGGACGGTGG
GGGAGGGGGTGGGGGTGGCTTCGAAGGTGCAGCTTGGACGAGCGACGATG
ATGCCGGCTGA
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