mRNA_P-littoralis_Contig1135.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1135.6.1
Unique NamemRNA_P-littoralis_Contig1135.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1135.6.1 vs. uniprot
Match: A0A6C0JA70_9ZZZZ (DUF4338 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JA70_9ZZZZ)

HSP 1 Score: 75.5 bits (184), Expect = 1.560e-13
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  103 FKEQACRRNIRVSISFDEYSSIVRTACWYCGEFTYKGYSGVDRVQNAGAYEKDNDVPCCKTCNFMKGPLSVDDFLGKVKHI 345
            +K+ + +RNI+ +IS  EY +I+   C YCG F  +G +G+DRV +   YE  N VPCCKTCN +KG L++  F  K+K+I
Sbjct:  365 YKKSSAKRNIKFNISETEYINILTYPCKYCGCFN-QGANGIDRVHSELPYEIGNIVPCCKTCNSLKGTLTLLQFKQKLKNI 444          
BLAST of mRNA_P-littoralis_Contig1135.6.1 vs. uniprot
Match: A0A6C0B6K3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0B6K3_9ZZZZ)

HSP 1 Score: 70.5 bits (171), Expect = 8.370e-12
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  136 VSISFDEYSSIVRTACWYCGEFTYKGYSGVDRVQNAGAYEKDNDVPCCKTCNFMKGPLSVDDFLGKVKHI 345
            + ++ +++ SI +  C+YCG    KG++G+DR+ +   YE DN V CC  CN MKG +    F+ +V+HI
Sbjct:  254 IDLTIEQFESITKQPCYYCGIIQDKGFNGIDRMDSTKGYEIDNCVSCCTECNMMKGAVDNITFIQRVEHI 323          
BLAST of mRNA_P-littoralis_Contig1135.6.1 vs. uniprot
Match: A0A843A3E2_9ARCH (Uncharacterized protein n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A843A3E2_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 2.170e-11
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 1
Query:  103 FKEQACRRNIRVSISFDEYSSIVRTACWYCG-----------EFTYKG----YSGVDRVQNAGAYEKDNDVPCCKTCNFMKGPLSVDDFLGKVKHI 345
            +K  A  R    +++ +E+  + ++ C+YCG             + KG    Y+G+DRV N+  YE  N VPCCKTCN MKG L  ++F  K+K I
Sbjct:   26 YKRTARIREYAFTLTKEEFLELTKSDCFYCGTEPKQYKSKYGNKSRKGIPFVYNGIDRVDNSVGYEYANCVPCCKTCNRMKGCLGFNEFTKKIKEI 121          
BLAST of mRNA_P-littoralis_Contig1135.6.1 vs. uniprot
Match: L8GNC2_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GNC2_ACACA)

HSP 1 Score: 63.5 bits (153), Expect = 8.930e-11
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 1
Query:  103 FKEQACRRNIRVSISFDEYSSIVRTACWYCGEFTYKGYSGVDRVQNAGAYEKDNDVPCCKTCNFMKGPLSVDDFLGKVKHI 345
            + ++A +RN+   +    +  ++ + C+ CG    +   GVDR  N   Y  +N +PCCKTCNF+KG L + D L +V  I
Sbjct:   19 YMKKAAKRNLVFELERSHFDELLGSPCYLCG---VRSAGGVDRTDNTVGYTVENAMPCCKTCNFLKGTLPLCDVLTRVDEI 96          
BLAST of mRNA_P-littoralis_Contig1135.6.1 vs. uniprot
Match: A0A0F9UB66_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9UB66_9ZZZZ)

HSP 1 Score: 63.2 bits (152), Expect = 6.910e-10
Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  103 FKEQACRRNIRVSISFDEYSSIVRTACWYCG-----EFTYKG------YSGVDRVQNAGAYEKDNDVPCCKTCNFMKGPLSVDDFLGKVKHIA 348
            ++ QA  R +  S+S   +  +V  +C YCG         KG      YSG+DRV     Y   N VPCCKTCN+ KG +++++F   +  IA
Sbjct:   89 YRHQAKTRGLGFSLSKKHFRELVTNSCHYCGIPPSNSVKKKGSNGEFVYSGIDRVATKYGYSVKNCVPCCKTCNWAKGTMNLEEFKSWITRIA 181          
BLAST of mRNA_P-littoralis_Contig1135.6.1 vs. uniprot
Match: A0A1X7QBF9_AZOLI (Uncharacterized protein n=1 Tax=Azospirillum lipoferum TaxID=193 RepID=A0A1X7QBF9_AZOLI)

HSP 1 Score: 54.3 bits (129), Expect = 3.250e-6
Identity = 31/97 (31.96%), Postives = 48/97 (49.48%), Query Frame = 1
Query:  109 EQACRRNIRV-SISFDEYSSIVRTACWYCG-------------EFTYKG----YSGVDRVQNAGAYEKDNDVPCCKTCNFMKGPLSVDDFLGKVKHI 345
            +   +RN RV ++SF++   ++   C YCG             +  Y G    Y+G+DRV NA  Y ++N V CCK CN  K  + V DF   ++ +
Sbjct:  181 QSVAKRNGRVFTLSFEDVQDLITRNCRYCGVPPCTQHRILFSGKQPYPGEPFLYNGIDRVDNAVGYVRENCVSCCKRCNQAKLDMDVGDFKAWLRQV 277          
BLAST of mRNA_P-littoralis_Contig1135.6.1 vs. uniprot
Match: A0A6J5RY38_9CAUD (Uncharacterized protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5RY38_9CAUD)

HSP 1 Score: 52.0 bits (123), Expect = 1.440e-5
Identity = 26/90 (28.89%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  142 ISFDEYSSIVRTACWYCG-----------------EFTYKG----YSGVDRVQNAGAYEKDNDVPCCKTCNFMKGPLSVDDFLGKVKHIA 348
            ++F+++  + +  C+YC                  +F+ +     Y+G+DR+ ++  + K+N VPCCK CNFMKG L+  +F   +++IA
Sbjct:   90 LTFEDFLILSQQKCYYCNCKPSSNYNAFSKRKNALKFSIENGNFQYNGLDRLDSSLLHNKNNMVPCCKICNFMKGILTPTEFKIYIENIA 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1135.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6C0JA70_9ZZZZ1.560e-1345.68DUF4338 domain-containing protein n=1 Tax=viral me... [more]
A0A6C0B6K3_9ZZZZ8.370e-1238.57Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A843A3E2_9ARCH2.170e-1136.46Uncharacterized protein n=1 Tax=Thermoplasmata arc... [more]
L8GNC2_ACACA8.930e-1134.57Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A0F9UB66_9ZZZZ6.910e-1035.48Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A1X7QBF9_AZOLI3.250e-631.96Uncharacterized protein n=1 Tax=Azospirillum lipof... [more]
A0A6J5RY38_9CAUD1.440e-528.89Uncharacterized protein n=1 Tax=uncultured Caudovi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1135contigP-littoralis_Contig1135:31050..31397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10506.Q98540_PBCV1
Model size348
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.32e-08
EggNOG OGs4QC9Q@10239|Viruses,4R0EV@35237|dsDNA viruses no RNA stage
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789461.1205533-CDS-P-littoralis_Contig1135:31049..313971680789461.1205533-CDS-P-littoralis_Contig1135:31049..31397Pylaiella littoralis U1_48CDSP-littoralis_Contig1135 31050..31397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1135.6.1prot_P-littoralis_Contig1135.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1135 31050..31397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1135.6.1

>prot_P-littoralis_Contig1135.6.1 ID=prot_P-littoralis_Contig1135.6.1|Name=mRNA_P-littoralis_Contig1135.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
RRIRALQNKRYRRSTAYDKYLKARKTDVVYRWRVFKEQACRRNIRVSISF
DEYSSIVRTACWYCGEFTYKGYSGVDRVQNAGAYEKDNDVPCCKTCNFMK
GPLSVDDFLGKVKHIA
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mRNA from alignment at P-littoralis_Contig1135:31050..31397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1135.6.1 ID=mRNA_P-littoralis_Contig1135.6.1|Name=mRNA_P-littoralis_Contig1135.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig1135:31050..31397+ (Pylaiella littoralis U1_48)
CGACGCATACGAGCCCTGCAAAACAAACGATACCGAAGGTCCACCGCATA TGACAAGTACTTGAAAGCCAGGAAAACAGATGTGGTCTACAGGTGGCGCG TGTTCAAGGAGCAGGCCTGTAGGAGAAATATCAGGGTGTCGATTAGCTTT GACGAGTACAGCAGCATCGTACGTACAGCGTGCTGGTACTGCGGCGAATT TACATACAAGGGGTATTCAGGAGTAGACCGCGTGCAGAACGCGGGAGCGT ACGAAAAAGACAACGATGTGCCTTGCTGTAAAACTTGCAACTTTATGAAA GGGCCACTTTCGGTTGACGACTTCTTGGGGAAGGTCAAGCACATCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1135:31050..31397+

>mRNA_P-littoralis_Contig1135.6.1 ID=mRNA_P-littoralis_Contig1135.6.1|Name=mRNA_P-littoralis_Contig1135.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig1135:31050..31397+ (Pylaiella littoralis U1_48)
CGACGCATACGAGCCCTGCAAAACAAACGATACCGAAGGTCCACCGCATA
TGACAAGTACTTGAAAGCCAGGAAAACAGATGTGGTCTACAGGTGGCGCG
TGTTCAAGGAGCAGGCCTGTAGGAGAAATATCAGGGTGTCGATTAGCTTT
GACGAGTACAGCAGCATCGTACGTACAGCGTGCTGGTACTGCGGCGAATT
TACATACAAGGGGTATTCAGGAGTAGACCGCGTGCAGAACGCGGGAGCGT
ACGAAAAAGACAACGATGTGCCTTGCTGTAAAACTTGCAACTTTATGAAA
GGGCCACTTTCGGTTGACGACTTCTTGGGGAAGGTCAAGCACATCGCG
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