mRNA_P-littoralis_Contig1131.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1131.19.1
Unique NamemRNA_P-littoralis_Contig1131.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1131.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1131contigP-littoralis_Contig1131:28951..29468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size519
Hectar predicted targeting categorychloroplast
Exons1
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789459.7185678-CDS-P-littoralis_Contig1131:28952..294681680789459.7185678-CDS-P-littoralis_Contig1131:28952..29468Pylaiella littoralis U1_48CDSP-littoralis_Contig1131 28953..29468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1131.19.1prot_P-littoralis_Contig1131.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1131 28953..29468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1131.19.1

>prot_P-littoralis_Contig1131.19.1 ID=prot_P-littoralis_Contig1131.19.1|Name=mRNA_P-littoralis_Contig1131.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
VGGGGVAFVVAAAVAAAAAAAAHLASSSTEQSFITNTPVYGRHIWPSKGK
VCSNVNQHLGGRCPLFEDVLPLLMEKKIACFGDVPNAAKCCSLFFFFRRR
FAGSKGPNVHTAAAVEGRRRHQNMTVTFSLTTPPVKVKPFWLSPLFTTPR
QQDVELAVGFFDRPREASLLGQ
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mRNA from alignment at P-littoralis_Contig1131:28951..29468-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1131.19.1 ID=mRNA_P-littoralis_Contig1131.19.1|Name=mRNA_P-littoralis_Contig1131.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=518bp|location=Sequence derived from alignment at P-littoralis_Contig1131:28951..29468- (Pylaiella littoralis U1_48)
GTTGGTGGAGGTGGTGTTGCCTTTGTTGTAGCTGCCGCAGTTGCCGCCGC
CGCGGCCGCCGCCGCCCACTTGGCTTCGTCCTCAACAGAACAATCTTTCA
TCACTAACACCCCTGTTTATGGTCGCCATATCTGGCCGTCAAAAGGAAAA
GTTTGCTCAAATGTCAATCAACATTTAGGAGGCAGATGTCCACTTTTCGA
AGATGTCCTCCCCCTACTTATGGAGAAAAAAATAGCTTGTTTCGGAGATG
TTCCAAATGCGGCGAAATGTTGTTCTCTTTTCTTTTTTTTTCGTCGGAGG
TTCGCAGGCTCAAAGGGCCCAAACGTGCACACAGCAGCAGCAGTTGAAGG
TCGGAGGCGACATCAGAACATGACAGTCACTTTCTCTCTCACTACACCAC
CTGTCAAGGTCAAACCTTTTTGGCTGTCACCTCTATTCACTACTCCCCGT
CAACAGGATGTTGAGTTGGCCGTAGGCTTTTTCGACCGGCCGAGAGAAGC
GTCGCTCCTGGGCCAACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1131:28951..29468-

>mRNA_P-littoralis_Contig1131.19.1 ID=mRNA_P-littoralis_Contig1131.19.1|Name=mRNA_P-littoralis_Contig1131.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig1131:28951..29468- (Pylaiella littoralis U1_48)
GTTGGTGGAGGTGGTGTTGCCTTTGTTGTAGCTGCCGCAGTTGCCGCCGC
CGCGGCCGCCGCCGCCCACTTGGCTTCGTCCTCAACAGAACAATCTTTCA
TCACTAACACCCCTGTTTATGGTCGCCATATCTGGCCGTCAAAAGGAAAA
GTTTGCTCAAATGTCAATCAACATTTAGGAGGCAGATGTCCACTTTTCGA
AGATGTCCTCCCCCTACTTATGGAGAAAAAAATAGCTTGTTTCGGAGATG
TTCCAAATGCGGCGAAATGTTGTTCTCTTTTCTTTTTTTTTCGTCGGAGG
TTCGCAGGCTCAAAGGGCCCAAACGTGCACACAGCAGCAGCAGTTGAAGG
TCGGAGGCGACATCAGAACATGACAGTCACTTTCTCTCTCACTACACCAC
CTGTCAAGGTCAAACCTTTTTGGCTGTCACCTCTATTCACTACTCCCCGT
CAACAGGATGTTGAGTTGGCCGTAGGCTTTTTCGACCGGCCGAGAGAAGC
GTCGCTCCTGGGCCAA
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