mRNA_P-littoralis_Contig113.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.88.1
Unique NamemRNA_P-littoralis_Contig113.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig113.88.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.380e-12
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 3 
Query:  213 QARSGGYSASRRNGGRIDSIKEELEGHD-SAHGTRPRTWRSGPGSGGG-----------GASSRNGWGGSTEDADMLIGLS 419
            +A SGGYS+ RR  GRIDSIKEELEGH+ S HGTR RTWR+G G   G               ++GWGG+ EDA+ LIGL+
Sbjct:  339 RAWSGGYSSGRRKSGRIDSIKEELEGHEGSTHGTRSRTWRAGSGGSSGFDGEXXXXXXXXXXXKSGWGGTVEDAETLIGLA 419
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K330_9PHAE1.380e-1254.32CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:370096..370820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size436
Hectar predicted targeting categorysignal peptide
Exons2
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.9518247-UTR-P-littoralis_Contig113:370095..3701311680789456.9518247-UTR-P-littoralis_Contig113:370095..370131Pylaiella littoralis U1_48UTRP-littoralis_Contig113 370096..370131 -
1680789456.9824364-UTR-P-littoralis_Contig113:370690..3708201680789456.9824364-UTR-P-littoralis_Contig113:370690..370820Pylaiella littoralis U1_48UTRP-littoralis_Contig113 370691..370820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.9626036-CDS-P-littoralis_Contig113:370131..3702441680789456.9626036-CDS-P-littoralis_Contig113:370131..370244Pylaiella littoralis U1_48CDSP-littoralis_Contig113 370132..370244 -
1680789456.973979-CDS-P-littoralis_Contig113:370533..3706901680789456.973979-CDS-P-littoralis_Contig113:370533..370690Pylaiella littoralis U1_48CDSP-littoralis_Contig113 370534..370690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.88.1prot_P-littoralis_Contig113.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 370132..370690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.88.1

>prot_P-littoralis_Contig113.88.1 ID=prot_P-littoralis_Contig113.88.1|Name=mRNA_P-littoralis_Contig113.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MRCLQTEPPLSSLALMVLLFVMSGLSWTGEVRRLLGEQEERGQDRFNQGR
ARGTRQRPWDASADVEVRARKRRRRRVFEEWLGWKHGGC*
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mRNA from alignment at P-littoralis_Contig113:370096..370820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.88.1 ID=mRNA_P-littoralis_Contig113.88.1|Name=mRNA_P-littoralis_Contig113.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=725bp|location=Sequence derived from alignment at P-littoralis_Contig113:370096..370820- (Pylaiella littoralis U1_48)
CGAAAACCTGTTATGTGTGTGCGACGTGACAGATTTTTCACTTATTTGTG
GTGAGGGGAAAGGAAAAAGGGCTGTAGAAAGGCAAGGGCAAGTGGAGTTG
AAAGACTGCACGCAGAGTGGAAGGGAGGCTATGAGATGCTTACAAACTGA
ACCGCCGCTTTCGTCGTTAGCGCTGATGGTGCTCTTGTTTGTCATGTCGG
GGTTGTCGTGGACAGGCGAGGTCAGGCGGCTACTCGGCGAGCAGGAGGAA
CGGGGGCAGGATCGATTCAATCAAGGAAGAGCTCGAGGTGGTTTGAAATT
GTCGTTTGTACCGCTGTTGGTGCAGTGGTGGTGATGGGGGGAGGGGCCAG
CGTTAGTGGTGATGGTGGTGCGGAGATCGTTGCTATTGGCAGGTGATGAG
GCTGTCTATCAAGGCGATAAACAAAGCCTGCCAAATCCGTTTCAAAGCAC
TGCTGTTTTGCCTACTCCGCACTCATATACCCTGCCCGCATCTCCATACA
ATACTTGCGCCCGATCTATTTTGAAACGTTCTTTATTTTATTTTGTGTCA
TGGAATATTTACGTCGCCCATGCCAGGGACACGACAGCGCCCATGGGACG
CGTCCGCGGACGTGGAGGTCCGGGCCAGGAAGCGGCGGCGGCGGCGCGTC
TTCGAGGAATGGTTGGGGTGGAAGCACGGAGGATGCTGACATGCTCATCG
GACTATCATAGCGAGGTAGAGGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:370096..370820-

>mRNA_P-littoralis_Contig113.88.1 ID=mRNA_P-littoralis_Contig113.88.1|Name=mRNA_P-littoralis_Contig113.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig113:370096..370820- (Pylaiella littoralis U1_48)
ATGAGATGCTTACAAACTGAACCGCCGCTTTCGTCGTTAGCGCTGATGGT
GCTCTTGTTTGTCATGTCGGGGTTGTCGTGGACAGGCGAGGTCAGGCGGC
TACTCGGCGAGCAGGAGGAACGGGGGCAGGATCGATTCAATCAAGGAAGA
GCTCGAGGGACACGACAGCGCCCATGGGACGCGTCCGCGGACGTGGAGGT
CCGGGCCAGGAAGCGGCGGCGGCGGCGCGTCTTCGAGGAATGGTTGGGGT
GGAAGCACGGAGGATGCTGA
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