mRNA_P-littoralis_Contig1128.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1128.9.1
Unique NamemRNA_P-littoralis_Contig1128.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1128.9.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.390e-39
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:    1 ECLDRAHIQKNLKKALVKFMPGYASRVCRYFAYVVPKAKELEAECADGSITRSEAFAEMFVHIIYHLQGDHTYCTSDCAGVEEVLEVDEEPRPGNKEQPDIFDV 312
            ECLDRAHIQKN+KKA+VKF  GYASR CRYFA+VV +A+E+   C D SIT +EAF E F H+++HLQG H YC+S CAG EE +   EEPR GN EQPDIFD+
Sbjct:  231 ECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPDIFDI 334
[Close]
BLAST of mRNA_P-littoralis_Contig1128.9.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 5.930e-39
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:    1 ECLDRAHIQKNLKKALVKFMPGYASRVCRYFAYVVPKAKELEAECADGSITRSEAFAEMFVHIIYHLQGDHTYCTSDCAGVEEVLEVDEEPRPGNKEQPDIFDV 312
            ECLDRAHIQKN+KKA+VKF  GYASR CRYFA+VV +A+E+   C D SIT +EAF E F H+++HLQG H YC+S CAG EE +   EEPR GN EQPDIFD+
Sbjct:  898 ECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPDIFDI 1001
[Close]
BLAST of mRNA_P-littoralis_Contig1128.9.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.140e-31
Identity = 56/104 (53.85%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:    1 ECLDRAHIQKNLKKALVKFMPGYASRVCRYFAYVVPKAKELEAECADGSITRSEAFAEMFVHIIYHLQGDHTYCTSDCAGVEEVLEVDEEPRPGNKEQPDIFDV 312
            ECLDR+H+QKNL KA+VKF+PG+A RV R FAY V  +++ E +C DGS +R+EAF E F H+++HL+G+H YC+ +C+G E+++ + EEPR     QPDIFD+
Sbjct:  845 ECLDRSHVQKNLVKAIVKFLPGFAPRVSRNFAYCVAASRKEEEKCEDGSTSRAEAFVEGFAHLVFHLKGNHQYCSPECSGAEKIVAL-EEPRKTIAPQPDIFDI 947
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1128.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHR1_9PHAE1.390e-3965.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU55_9PHAE5.930e-3965.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W2_9PHAE1.140e-3153.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1128contigP-littoralis_Contig1128:25345..25927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size313
Hectar predicted targeting categoryother localisation
Exons3
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789455.8074298-CDS-P-littoralis_Contig1128:25345..254521680789455.8074298-CDS-P-littoralis_Contig1128:25345..25452Pylaiella littoralis U1_48CDSP-littoralis_Contig1128 25346..25452 -
1680789455.8163917-CDS-P-littoralis_Contig1128:25577..257551680789455.8163917-CDS-P-littoralis_Contig1128:25577..25755Pylaiella littoralis U1_48CDSP-littoralis_Contig1128 25578..25755 -
1680789455.8251433-CDS-P-littoralis_Contig1128:25900..259271680789455.8251433-CDS-P-littoralis_Contig1128:25900..25927Pylaiella littoralis U1_48CDSP-littoralis_Contig1128 25901..25927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1128.9.1prot_P-littoralis_Contig1128.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1128 25346..25927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1128.9.1

>prot_P-littoralis_Contig1128.9.1 ID=prot_P-littoralis_Contig1128.9.1|Name=mRNA_P-littoralis_Contig1128.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
ECLDRAHIQKNLKKALVKFMPGYASRVCRYFAYVVPKAKELEAECADGSI
TRSEAFAEMFVHIIYHLQGDHTYCTSDCAGVEEVLEVDEEPRPGNKEQPD
IFDV
back to top

mRNA from alignment at P-littoralis_Contig1128:25345..25927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1128.9.1 ID=mRNA_P-littoralis_Contig1128.9.1|Name=mRNA_P-littoralis_Contig1128.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=583bp|location=Sequence derived from alignment at P-littoralis_Contig1128:25345..25927- (Pylaiella littoralis U1_48)
GAGTGCTTGGATCGAGCGCACATTCAGGTATTTGTGGGTTTCCCGGTCGC
GGTCGATGCACACGAAGTGCCCTGACACGTTGCGAACGATCCGTGCTTCT
ATAACATGATCTGGCGCCAGTACACGTTTTTTTTTAATCAGTGCCCGTCG
GTCGCAACCTTTCCGCTAGCAGAAAAACCTCAAGAAGGCCTTGGTCAAGT
TCATGCCAGGGTACGCCAGCCGAGTGTGTCGATATTTCGCCTACGTGGTT
CCGAAGGCGAAGGAGCTGGAGGCCGAATGCGCCGATGGCAGCATCACTCG
GTCTGAGGCGTTCGCGGAGATGTTCGTACACATTATCTATCATCTACAAG
GTACGACGATAGCAGACATGCGGGCCAACCCATGTTGTTGAGATTAGTAT
CCTTTCTCCAACGCAAGGCCTCGCTAGACGACGTGTATAATCTTCGACCT
CGCTCATGCATTGGTACTTTCGCAGGAGACCACACCTACTGCACTTCGGA
TTGCGCCGGGGTCGAGGAAGTGCTGGAGGTTGACGAGGAACCCCGCCCAG
GTAACAAGGAGCAGCCGGACATATTCGACGTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1128:25345..25927-

>mRNA_P-littoralis_Contig1128.9.1 ID=mRNA_P-littoralis_Contig1128.9.1|Name=mRNA_P-littoralis_Contig1128.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig1128:25345..25927- (Pylaiella littoralis U1_48)
GAGTGCTTGGATCGAGCGCACATTCAGAAAAACCTCAAGAAGGCCTTGGT
CAAGTTCATGCCAGGGTACGCCAGCCGAGTGTGTCGATATTTCGCCTACG
TGGTTCCGAAGGCGAAGGAGCTGGAGGCCGAATGCGCCGATGGCAGCATC
ACTCGGTCTGAGGCGTTCGCGGAGATGTTCGTACACATTATCTATCATCT
ACAAGGAGACCACACCTACTGCACTTCGGATTGCGCCGGGGTCGAGGAAG
TGCTGGAGGTTGACGAGGAACCCCGCCCAGGTAACAAGGAGCAGCCGGAC
ATATTCGACGTC
back to top