mRNA_P-littoralis_Contig112.128.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig112.128.1
Unique NamemRNA_P-littoralis_Contig112.128.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig112.128.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.160e-32
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    1 KDCLIIGDEGNGIGEGELQALHHAYLVGRTASPLTGEGGGSSSENNQEGQGETPPVRVEVVSI 189
            KD LIIGDEGNGIGEGELQALHHAYLVGRTA PLTGEGGGSSSENNQEGQGETPPVRVEVVSI
Sbjct:  231 KDSLIIGDEGNGIGEGELQALHHAYLVGRTAGPLTGEGGGSSSENNQEGQGETPPVRVEVVSI 293
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BLAST of mRNA_P-littoralis_Contig112.128.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.080e-6
Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 KDCLIIGDEGNGIGEGELQALHHAYLVGRTASPLTGEGGGSSSENNQEGQGETP----PVRVEVVSI 189
            K+  II  E NGIGEGELQALHHAY+ G+      G+GG       +EG    P    PV VEVVS+
Sbjct:  845 KELDIILLEANGIGEGELQALHHAYMTGKNNKESRGQGG-----EVREGGVVVPTSEDPVTVEVVSV 906
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig112.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUZ3_9PHAE3.160e-3296.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRV8_9PHAE1.080e-649.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig112contigP-littoralis_Contig112:506883..507072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size192
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.0692344-CDS-P-littoralis_Contig112:506883..5070721680789452.0692344-CDS-P-littoralis_Contig112:506883..507072Pylaiella littoralis U1_48CDSP-littoralis_Contig112 506884..507072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig112.128.1prot_P-littoralis_Contig112.128.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig112 506884..507072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig112.128.1

>prot_P-littoralis_Contig112.128.1 ID=prot_P-littoralis_Contig112.128.1|Name=mRNA_P-littoralis_Contig112.128.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
KDCLIIGDEGNGIGEGELQALHHAYLVGRTASPLTGEGGGSSSENNQEGQ
GETPPVRVEVVSI
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mRNA from alignment at P-littoralis_Contig112:506883..507072-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig112.128.1 ID=mRNA_P-littoralis_Contig112.128.1|Name=mRNA_P-littoralis_Contig112.128.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=190bp|location=Sequence derived from alignment at P-littoralis_Contig112:506883..507072- (Pylaiella littoralis U1_48)
AAAGACTGCTTGATAATTGGTGACGAGGGCAACGGTATAGGAGAAGGCGA
ACTCCAGGCCCTACACCACGCCTACCTCGTCGGTCGAACAGCGAGCCCGC
TGACGGGGGAGGGTGGCGGTAGTAGCTCCGAGAATAACCAGGAGGGACAA
GGGGAAACACCACCCGTTCGGGTCGAGGTAGTATCTATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig112:506883..507072-

>mRNA_P-littoralis_Contig112.128.1 ID=mRNA_P-littoralis_Contig112.128.1|Name=mRNA_P-littoralis_Contig112.128.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig112:506883..507072- (Pylaiella littoralis U1_48)
AAAGACTGCTTGATAATTGGTGACGAGGGCAACGGTATAGGAGAAGGCGA
ACTCCAGGCCCTACACCACGCCTACCTCGTCGGTCGAACAGCGAGCCCGC
TGACGGGGGAGGGTGGCGGTAGTAGCTCCGAGAATAACCAGGAGGGACAA
GGGGAAACACCACCCGTTCGGGTCGAGGTAGTATCTATC
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