mRNA_P-littoralis_Contig112.127.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig112.127.1
Unique NamemRNA_P-littoralis_Contig112.127.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig112.127.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 3.010e-149
Identity = 226/285 (79.30%), Postives = 231/285 (81.05%), Query Frame = 3 
Query:    3 CLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTKIIEDGVVTGLHLERQELVKFVALAYFVKNKSLFANALPGYQVTGDKHGGEVDDTRRWVEAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPSGSPGSDASARYPIEVPKWDGMGYIEKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSTRRKRGGHCTSCVCITKGFGHCSELCKCKLKCREEETEESEIQEDRSAEGGLVDMGEDSDSDSD--EEQLP 851
            CLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGT++IEDG                                           GEVDDTRRWVEAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPS SPGSDASARYPI+V KWDGM YIEKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSS +RKRGGHCTSCVCITKGFGHCSELCKCKLKCREEETEESE+QEDRSAEGGLVDMGEDS       EEQLP
Sbjct:  358 CLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTELIEDGE------------------------------------------GEVDDTRRWVEAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPSDSPGSDASARYPIQVSKWDGMWYIEKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSAKRKRGGHCTSCVCITKGFGHCSELCKCKLKCREEETEESEMQEDRSAEGGLVDMGEDSXXXXXXXEEQLP 600
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BLAST of mRNA_P-littoralis_Contig112.127.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 8.550e-93
Identity = 154/258 (59.69%), Postives = 183/258 (70.93%), Query Frame = 3 
Query:    3 CLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTKIIEDGVVTGLHLERQELVKFVALAYFVKNKSLFANALPGYQVTG----DKHGGEVDDTRRWVEAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPSGSPGSDASARYPIEVPKWDGMGYIEKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSTRRKRGGHCTSCVCITKGFGHCSELCKCKLKCREEETEES 764
            CLPVIA+YML GTDFTPT  G +SFFMFQSYFE  KN ENH+F+KALG   ++DG V G+ LER+EL+KFVALAYF K ++ F    PG+QV       K  G VD+T+ WV+AI  RT+E  YG G + +AAPNYD  +LCVLRM WLVEYWLS+VP  + GS+ S  YPI VP+W+  GY++  EV+G C ML+RR PKVTIWPGG ETVKC CS    +  G CTSCVC  KG   CSELCKCK  C  EET  S
Sbjct:  575 CLPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYP-PGHQVEPIVDPKKRNGAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNKGYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGR--GQCTSCVCKQKG-SICSELCKCKRACCVEETNPS 828
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BLAST of mRNA_P-littoralis_Contig112.127.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 1.790e-90
Identity = 154/258 (59.69%), Postives = 183/258 (70.93%), Query Frame = 3 
Query:    3 CLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTKIIEDGVVTGLHLERQELVKFVALAYFVKNKSLFANALPGYQVTG----DKHGGEVDDTRRWVEAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPSGSPGSDASARYPIEVPKWDGMGYIEKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSTRRKRGGHCTSCVCITKGFGHCSELCKCKLKCREEETEES 764
            CLPVIA+YML GTDFTPT  G +SFFMFQSYFE  KN ENH+F+KALG   ++DG V G+ LER+EL+KFVALAYF K ++ F    PG+QV       K  G VD+T+ WV+AI  RT+E  YG G + +AAPNYD  +LCVLRM WLVEYWLS+VP  + GS+ S  YPI VP+W+  GY++  EV+G C ML+RR PKVTIWPGG ETVKC CS    +  G CTSCVC  KG   CSELCKCK  C  EET  S
Sbjct: 1069 CLPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYP-PGHQVEPIVDPKKRNGAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNKGYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGR--GQCTSCVCKQKG-SICSELCKCKRACCVEETNPS 1322
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BLAST of mRNA_P-littoralis_Contig112.127.1 vs. uniprot
Match: A0A6H5L1Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q2_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 7.260e-67
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 3 
Query:  426 MSWLVEYWLSVVPSGSPGSDASARYPIEVPKWDGMGYIEKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSTRRKRGGHCTSCVCITKGFGHCSELCKCKLKCREEETE 758
            MSWLV+YWLSVVPSGSPGSD SARYPI+VPK DGMGYIE TEVEGGCMMLMRRFPKVTIWPGGFETV+C CSS +RKRGG CTSCVCITKG G CSELCKCKL CREEETE
Sbjct:    1 MSWLVKYWLSVVPSGSPGSDVSARYPIQVPKRDGMGYIENTEVEGGCMMLMRRFPKVTIWPGGFETVRCKCSSGKRKRGGRCTSCVCITKGSGQCSELCKCKLTCREEETE 111
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BLAST of mRNA_P-littoralis_Contig112.127.1 vs. uniprot
Match: A0A6H5JTC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC3_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.540e-39
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 3 
Query:  276 VTGDKHGGEVDDTRRWVEAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPSGSPGSDASARYPI 506
            VT DK  GEVDDTR+WV+AIQ RTAEKWYGAGNLSKAAPNYDA ELCV++MSWLV+YWLSVVPSGSPGSD SARYPI
Sbjct:   17 VTRDKREGEVDDTRQWVQAIQGRTAEKWYGAGNLSKAAPNYDATELCVVQMSWLVKYWLSVVPSGSPGSDVSARYPI 93
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BLAST of mRNA_P-littoralis_Contig112.127.1 vs. uniprot
Match: A0A6H5KUA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.320e-9
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:    6 LPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGT 149
            LP+I++Y+LNGTD+TPTLSGL++  MFQ+Y++  K+A NH FV  LG+
Sbjct:   81 LPIISAYVLNGTDYTPTLSGLTASSMFQAYYDALKDAGNHNFVLPLGS 128
[Close]
BLAST of mRNA_P-littoralis_Contig112.127.1 vs. uniprot
Match: A0A6H5JVH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.300e-8
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:    6 LPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTK 152
            LP+I +Y+LNGTDFTPTLSGL++  M Q+Y++  K+A NH FV  LG++
Sbjct:   92 LPIIYAYVLNGTDFTPTLSGLTASSMSQAYYDALKDAGNHNFVLPLGSE 140
[Close]
BLAST of mRNA_P-littoralis_Contig112.127.1 vs. uniprot
Match: A0A6H5JPJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.210e-8
Identity = 25/49 (51.02%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    6 LPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTK 152
            LP++++++LNGTDFTPTLSGL++  +FQ++++  K+A NH FV  LG++
Sbjct:   61 LPIVSAFVLNGTDFTPTLSGLTASSVFQAFYDALKDAGNHNFVLPLGSE 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig112.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KUZ3_9PHAE3.010e-14979.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA3_9PHAE8.550e-9359.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE1.790e-9059.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Q2_9PHAE7.260e-6788.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC3_9PHAE1.540e-3985.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA8_9PHAE5.320e-958.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH3_9PHAE6.300e-857.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPJ8_9PHAE7.210e-851.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig112contigP-littoralis_Contig112:505691..506698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1008
Hectar predicted targeting categoryother localisation
Exons1
Cds size885
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.007557-UTR-P-littoralis_Contig112:505690..5057871680789452.007557-UTR-P-littoralis_Contig112:505690..505787Pylaiella littoralis U1_48UTRP-littoralis_Contig112 505691..505787 -
1680789452.0318866-UTR-P-littoralis_Contig112:506672..5066981680789452.0318866-UTR-P-littoralis_Contig112:506672..506698Pylaiella littoralis U1_48UTRP-littoralis_Contig112 506673..506698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.0203366-CDS-P-littoralis_Contig112:505787..5066721680789452.0203366-CDS-P-littoralis_Contig112:505787..506672Pylaiella littoralis U1_48CDSP-littoralis_Contig112 505788..506672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig112.127.1prot_P-littoralis_Contig112.127.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig112 505788..506672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig112.127.1

>prot_P-littoralis_Contig112.127.1 ID=prot_P-littoralis_Contig112.127.1|Name=mRNA_P-littoralis_Contig112.127.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=295bp
MLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTKIIEDGVVT
GLHLERQELVKFVALAYFVKNKSLFANALPGYQVTGDKHGGEVDDTRRWV
EAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPSGSP
GSDASARYPIEVPKWDGMGYIEKTEVEGGCMMLMRRFPKVTIWPGGFETV
KCMCSSTRRKRGGHCTSCVCITKGFGHCSELCKCKLKCREEETEESEIQE
DRSAEGGLVDMGEDSDSDSDEEQLPVCLIPRTITPSRVLVAAWF*
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mRNA from alignment at P-littoralis_Contig112:505691..506698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig112.127.1 ID=mRNA_P-littoralis_Contig112.127.1|Name=mRNA_P-littoralis_Contig112.127.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1008bp|location=Sequence derived from alignment at P-littoralis_Contig112:505691..506698- (Pylaiella littoralis U1_48)
GGTGCTTGCCGGTGATTGCCTCGTACATGCTCAACGGCACTGACTTCACT
CCGACGCTTTCCGGCTTGAGTTCTTTCTTCATGTTCCAGTCATACTTCGA
GTTAGCGAAGAATGCTGAAAACCACCAGTTTGTCAAGGCCCTGGGCACCA
AAATAATAGAGGATGGGGTAGTCACTGGTTTACATTTGGAGAGGCAAGAA
TTGGTTAAGTTTGTTGCGCTCGCGTACTTTGTCAAGAACAAAAGTTTATT
TGCTAACGCTTTGCCGGGGTATCAAGTCACGGGAGATAAACATGGAGGGG
AGGTTGATGATACGAGGAGGTGGGTCGAAGCGATTCAGGAGCGAACTGCT
GAAAAATGGTACGGTGCGGGGAACCTCAGCAAAGCCGCCCCGAACTACGA
TGCCGCCGAACTTTGCGTCCTCCGGATGTCGTGGTTGGTAGAGTACTGGC
TTTCTGTTGTGCCGAGTGGTTCTCCGGGTTCGGATGCCTCCGCCAGGTAC
CCCATTGAAGTTCCCAAATGGGACGGGATGGGGTACATTGAGAAAACGGA
GGTTGAAGGTGGTTGTATGATGTTGATGCGCAGGTTCCCTAAGGTCACCA
TCTGGCCGGGTGGATTTGAAACGGTGAAGTGCATGTGTTCAAGCACGAGG
AGGAAGCGAGGGGGGCACTGCACAAGTTGCGTGTGCATCACTAAAGGTTT
TGGCCATTGCTCAGAGTTGTGCAAGTGCAAGCTTAAATGCCGCGAGGAAG
AGACGGAAGAAAGTGAGATACAGGAAGATCGTTCAGCTGAAGGAGGACTA
GTAGACATGGGCGAAGATAGTGACAGCGACAGCGACGAGGAACAGTTGCC
GGTATGTTTGATTCCTCGAACAATAACGCCGAGTCGGGTGTTAGTGGCGG
CTTGGTTTTAGGTTGTTTCCAGGAGGATGACGTTCGTGAGTACGAGCAGA
TAGCTGAAAACGCGTGGCGGCATCATGTAGGACAACCGTTGGATCTTGTG
GGTGCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig112:505691..506698-

>mRNA_P-littoralis_Contig112.127.1 ID=mRNA_P-littoralis_Contig112.127.1|Name=mRNA_P-littoralis_Contig112.127.1|organism=Pylaiella littoralis U1_48|type=CDS|length=885bp|location=Sequence derived from alignment at P-littoralis_Contig112:505691..506698- (Pylaiella littoralis U1_48)
ATGCTCAACGGCACTGACTTCACTCCGACGCTTTCCGGCTTGAGTTCTTT
CTTCATGTTCCAGTCATACTTCGAGTTAGCGAAGAATGCTGAAAACCACC
AGTTTGTCAAGGCCCTGGGCACCAAAATAATAGAGGATGGGGTAGTCACT
GGTTTACATTTGGAGAGGCAAGAATTGGTTAAGTTTGTTGCGCTCGCGTA
CTTTGTCAAGAACAAAAGTTTATTTGCTAACGCTTTGCCGGGGTATCAAG
TCACGGGAGATAAACATGGAGGGGAGGTTGATGATACGAGGAGGTGGGTC
GAAGCGATTCAGGAGCGAACTGCTGAAAAATGGTACGGTGCGGGGAACCT
CAGCAAAGCCGCCCCGAACTACGATGCCGCCGAACTTTGCGTCCTCCGGA
TGTCGTGGTTGGTAGAGTACTGGCTTTCTGTTGTGCCGAGTGGTTCTCCG
GGTTCGGATGCCTCCGCCAGGTACCCCATTGAAGTTCCCAAATGGGACGG
GATGGGGTACATTGAGAAAACGGAGGTTGAAGGTGGTTGTATGATGTTGA
TGCGCAGGTTCCCTAAGGTCACCATCTGGCCGGGTGGATTTGAAACGGTG
AAGTGCATGTGTTCAAGCACGAGGAGGAAGCGAGGGGGGCACTGCACAAG
TTGCGTGTGCATCACTAAAGGTTTTGGCCATTGCTCAGAGTTGTGCAAGT
GCAAGCTTAAATGCCGCGAGGAAGAGACGGAAGAAAGTGAGATACAGGAA
GATCGTTCAGCTGAAGGAGGACTAGTAGACATGGGCGAAGATAGTGACAG
CGACAGCGACGAGGAACAGTTGCCGGTATGTTTGATTCCTCGAACAATAA
CGCCGAGTCGGGTGTTAGTGGCGGCTTGGTTTTAG
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