prot_P-littoralis_Contig1.400.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1.400.1
Unique Nameprot_P-littoralis_Contig1.400.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length110
Homology
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.320e-73
Identity = 106/110 (96.36%), Postives = 110/110 (100.00%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110
            MPIILLHDAEGGI+TVELKNGEVCRG+LDEAEDSMNLVLKDC+KTNIRGKT+TLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110          
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: D7FT20_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT20_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 8.580e-71
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110
            MPIILLHDAEGGI+TVELKNGEVCRG+LDEAEDSMNLVLKDC+KTNIRGKT+TLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQ RKYKGHPPVLASEGAKGQRAAIIRK
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQGRKYKGHPPVLASEGAKGQRAAIIRK 110          
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.250e-48
Identity = 74/110 (67.27%), Postives = 93/110 (84.55%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110
            MP+ILLHDAEG + TVE+K+GEV RG+LDEAED+MN+++KD +KT++RGKT+TL ++YIRG+QIV  IVP+MLR A MF RI  WRKYKG+PP LAS    GQRAAI+RK
Sbjct:   11 MPVILLHDAEGAVCTVEVKSGEVYRGILDEAEDNMNILMKDILKTDVRGKTSTLSKMYIRGSQIVLVIVPDMLRRAAMFKRIVMWRKYKGNPPSLASSANTGQRAAILRK 120          
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.620e-42
Identity = 70/110 (63.64%), Postives = 84/110 (76.36%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110
            +PII+LHDAEG IVTVELKNGE  RGLLDEAED+MN +L D  KT   GK + + QLY+RG+QI F +VP+ L+  PMF RI+ WRKYKG+PP L S   +GQ AAIIRK
Sbjct:   11 IPIIMLHDAEGCIVTVELKNGETYRGLLDEAEDNMNCILVDVTKTTPMGKISKVDQLYVRGSQISFVVVPDTLQKGPMFKRIQMWRKYKGNPPSLGSVVPRGQAAAIIRK 120          
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC)

HSP 1 Score: 138 bits (347), Expect = 6.900e-40
Identity = 64/110 (58.18%), Postives = 87/110 (79.09%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110
            +PIILLHDAEGGI+TVE + GE+ RGLLDEAED+MNL+L+D  KTN+ GK + ++ +YI+G+Q+ F I+P+ML+ APMF RIK W+KY G+ P L + G +GQ A I +K
Sbjct:   11 IPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVPELGA-GVRGQAAVISQK 119          
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: A0A7S3K1R1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R1_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.720e-36
Identity = 59/110 (53.64%), Postives = 83/110 (75.45%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110
            +PIIL+HD EG IVTVE KNG++ RG LDE ED+MN ++KD  KT+  GK + ++ ++IRG+QI+F + P ML+ APMF R++ WRK++G+  +   E A+GQ AAIIRK
Sbjct:   28 VPIILMHDGEGTIVTVECKNGDMYRGFLDETEDNMNCIMKDVTKTSAEGKKSQIEHIFIRGSQILFFVFPTMLKKAPMFKRVRTWRKHRGN--ISKGEEARGQAAAIIRK 135          
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: A0A7S4N4C1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N4C1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.520e-36
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110
            +PI+LLHDAEGGIVTVE + GE+ RG+L EAED MNL +K+ I  +  G    + Q+Y+RG +IVF ++PNMLR+APMF RIK WRK+ G PP      A GQ AAI+RK
Sbjct:   11 IPIVLLHDAEGGIVTVETRKGEIVRGMLFEAEDMMNLYIKNAIVHDENGTKRKVDQMYLRGPEIVFIVLPNMLRHAPMFKRIKHWRKHGGAPPEGVG-AAVGQAAAILRK 119          
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: F0W7K3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.770e-35
Identity = 59/115 (51.30%), Postives = 85/115 (73.91%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLAS-----EGAKGQRAAIIRK 110
            +P ILLHD EG  V++E+K+GE+ RG L+E ED+MN VLK+ ++T+I G TT ++ +Y+RG+QI+F + P+ML++APMF R+K W+K+KG  P L        G +GQ AAIIRK
Sbjct:   11 IPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKLWKKHKGVIPSLGQGGPGGAGPRGQAAAIIRK 125          
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: A0A7S4VE27_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VE27_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.910e-35
Identity = 64/110 (58.18%), Postives = 82/110 (74.55%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110
            +PI+LLHDAEG +V+VE KNGE+ RGLL EAED MNL LK  +  N +G   ++ Q+Y+RG++IVF  +P+MLR+APMF RIK WRK+ G PP  A   A GQ AAI+RK
Sbjct:   11 IPIVLLHDAEGSVVSVETKNGELIRGLLFEAEDMMNLYLKKAVVLNPQGVKRSVDQVYVRGSEIVFISLPDMLRHAPMFQRIKHWRKHGGAPPEGA---AVGQAAAILRK 117          
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Match: D0NPB0_PHYIT (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Peronosporaceae TaxID=4777 RepID=D0NPB0_PHYIT)

HSP 1 Score: 126 bits (316), Expect = 4.790e-35
Identity = 61/125 (48.80%), Postives = 86/125 (68.80%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGKTTTLQQLYIRGNQIVFCIVPNM----------LRNAPMFARIKQWRKYKGHPPVLASEGA-----KGQRAAIIRK 110
            +P ILLHD EG IV++E+K GE  RGLLDE ED+MN V+KD ++T+I G T+ ++Q+Y+RG+QI+F + P++          L++APMF R+K W+K+KG  P L   G      +GQ AAIIRK
Sbjct:   11 IPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDIYPLQPDIAVTLKHAPMFKRVKMWKKHKGSIPTLGQGGVGGGAPRGQAAAIIRK 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.400.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L429_9PHAE1.320e-7396.36Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
D7FT20_ECTSI8.580e-7195.45Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A835YVP5_9STRA1.250e-4867.27Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6U1QDM6_9STRA2.620e-4263.64Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
I2CSB6_NANGC6.900e-4058.18Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A7S3K1R1_9STRA1.720e-3653.64Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A7S4N4C1_9STRA8.520e-3657.27Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
F0W7K3_9STRA1.770e-3551.30Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albu... [more]
A0A7S4VE27_9STRA2.910e-3558.18Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Dity... [more]
D0NPB0_PHYIT4.790e-3548.80Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Pero... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 4..69
e-value: 2.9E-10
score: 50.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..68
e-value: 1.4E-15
score: 56.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..80
e-value: 2.4E-25
score: 89.8
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 2..104
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 2..104
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 2..70
e-value: 6.44841E-37
score: 117.622
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1745564..1747552 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.400.1mRNA_P-littoralis_Contig1.400.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1 1745535..1747552 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1.400.1 ID=prot_P-littoralis_Contig1.400.1|Name=mRNA_P-littoralis_Contig1.400.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MPIILLHDAEGGIVTVELKNGEVCRGLLDEAEDSMNLVLKDCIKTNIRGK
TTTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGA
KGQRAAIIRK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034099SmD3
IPR010920LSM_dom_sf