mRNA_P-littoralis_Contig11.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.74.1
Unique NamemRNA_P-littoralis_Contig11.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JKK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.230e-17
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
            +  G  +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  R   LR K E +G   SD ++N H  R L  D
Sbjct:   65 VSAGKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGYPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRTSILRQKLEAYGWVQSDHDANAHYVRNLLPD 189          
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5KB85_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB85_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.160e-16
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   10 GDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
            G  +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H  R L  D
Sbjct:  368 GKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRILLPD 489          
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JQQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.970e-16
Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRH 351
            I  G  +L  + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H
Sbjct:  110 ISAGKTDLDISALKVEHGTVAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNYYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWGQSDHDANVH 226          
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JKH8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.250e-16
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
            I  G  +   + L+V  G  AV++A +AW +I+ K+ VP++V  +   G P+E+W+  + ++     T K  L+ +W +L+ Q GE P  Y  RA  LR K E +G   SD ++N H  R L  D
Sbjct:  110 ISAGKTDANISALNVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILTSGCPTESWDQFLNLFRVHAETDKLELQGQWYSLKQQSGEEPRRYLTRASVLRQKLEAYGWAQSDHDANVHYVRNLLPD 234          
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JCR6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.380e-16
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
            I  G+ +   + L V  G  AV++A +AW +I+ K+ VP++V  +   GSP+E+W+  +        + K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H  R L  D
Sbjct:  110 ISAGNTDANISALKVEHGTEAVDRAFKAWQLIISKIQVPTIVPAILDSGSPTESWDQFLNFCRVHAESDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRNLLPD 234          
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5LNE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.010e-15
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
            I+VG+ +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y       K  L+ +   L+ QVGE P  Y  RA   R K E +G   SD ++N H  R L  D
Sbjct:  401 IRVGNTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVYAERDKLELQGQLYTLKQQVGEEPRRYLTRASAPRQKLEAYGWVQSDHDANVHYVRNLMPD 525          
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.520e-14
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSD 375
            I+VG  +   + L V  G  AV++A +AW +I+  + VP++   + A G P+E+W+  +  Y     T K  L+ +  +L+ QVGE P  Y  RA  LR   E +G   SD ++N H  R L  D
Sbjct:   97 IRVGKTDANISALKVEHGTEAVDRAVKAWQLIISNMQVPTIFPAILASGCPTESWDQFLNFYRVHAETEKLELQGQRYSLKQQVGEEPLRYLTRASVLRQNLEAYGWVQSDHDANFHYVRNLLPD 221          
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.080e-12
Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRL 366
            I+VG  +     L   +G  A+EKA +AW +IL K+ V S+V  + + G P+E+W +    +     T + +L+ EW  L   V   P  Y +R   LR +    GV +++ ++NRH+ R L
Sbjct:  160 IRVGKSDADIPKLKEEYGRKAIEKAMKAWELILAKIQVASIVPAIISSGCPTESWRIFRNHFQLHAHTERTSLQLEWQELTQGVQHHPKEYLSRGWVLRQRLSSWGVKITEDDANRHLVRNL 281          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JKK7_9PHAE4.230e-1735.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB85_9PHAE1.160e-1636.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQQ7_9PHAE2.970e-1637.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKH8_9PHAE3.250e-1634.40Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JCR6_9PHAE8.380e-1635.20Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LNE2_9PHAE2.010e-1535.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE2.520e-1434.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN82_9PHAE1.080e-1231.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:423580..423956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789428.5692418-CDS-P-littoralis_Contig11:423581..4239561680789428.5692418-CDS-P-littoralis_Contig11:423581..423956Pylaiella littoralis U1_48CDSP-littoralis_Contig11 423582..423956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.74.1prot_P-littoralis_Contig11.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 423582..423956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.74.1

>prot_P-littoralis_Contig11.74.1 ID=prot_P-littoralis_Contig11.74.1|Name=mRNA_P-littoralis_Contig11.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGS
PSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRT
KREKHGVTLSDSESNRHIARRLSSD
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mRNA from alignment at P-littoralis_Contig11:423580..423956-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.74.1 ID=mRNA_P-littoralis_Contig11.74.1|Name=mRNA_P-littoralis_Contig11.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=377bp|location=Sequence derived from alignment at P-littoralis_Contig11:423580..423956- (Pylaiella littoralis U1_48)
ATCAAGGTGGGCGACAAAAATTTAAGATCAGCAGACCTGCACGTGATTTT TGGTGTACCAGCAGTAGAGAAGGCGCAGAGAGCGTGGAGTATTATACTGG AAAAGGTCACTGTTCCATCTCTTGTCGAGCAGCTGCAGGCACTAGGTAGT CCGAGTGAAGCATGGGAGCTGATGGTAGAGATGTATACTGCCTTGCCCAC CACAGCCAAAGAAACACTAGAGCAGGAGTGGATTAATCTGGAGATGCAAG TAGGAGAGACCCCCACTTTGTATTTTGCTCGCGCCAAAACGCTGCGCACA AAGCGTGAAAAACATGGCGTGACACTTTCCGATTCAGAGTCTAACAGACA TATTGCCCGCCGTCTTTCGTCCGACTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:423580..423956-

>mRNA_P-littoralis_Contig11.74.1 ID=mRNA_P-littoralis_Contig11.74.1|Name=mRNA_P-littoralis_Contig11.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig11:423580..423956- (Pylaiella littoralis U1_48)
ATCAAGGTGGGCGACAAAAATTTAAGATCAGCAGACCTGCACGTGATTTT
TGGTGTACCAGCAGTAGAGAAGGCGCAGAGAGCGTGGAGTATTATACTGG
AAAAGGTCACTGTTCCATCTCTTGTCGAGCAGCTGCAGGCACTAGGTAGT
CCGAGTGAAGCATGGGAGCTGATGGTAGAGATGTATACTGCCTTGCCCAC
CACAGCCAAAGAAACACTAGAGCAGGAGTGGATTAATCTGGAGATGCAAG
TAGGAGAGACCCCCACTTTGTATTTTGCTCGCGCCAAAACGCTGCGCACA
AAGCGTGAAAAACATGGCGTGACACTTTCCGATTCAGAGTCTAACAGACA
TATTGCCCGCCGTCTTTCGTCCGAC
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