mRNA_P-littoralis_Contig11.70.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.70.1
Unique NamemRNA_P-littoralis_Contig11.70.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:394216..394822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size609
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789424.70906-CDS-P-littoralis_Contig11:394215..3945331680789424.70906-CDS-P-littoralis_Contig11:394215..394533Pylaiella littoralis U1_48CDSP-littoralis_Contig11 394216..394533 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789424.7211914-UTR-P-littoralis_Contig11:394533..3948221680789424.7211914-UTR-P-littoralis_Contig11:394533..394822Pylaiella littoralis U1_48UTRP-littoralis_Contig11 394534..394822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.70.1prot_P-littoralis_Contig11.70.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 394216..394533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.70.1

>prot_P-littoralis_Contig11.70.1 ID=prot_P-littoralis_Contig11.70.1|Name=mRNA_P-littoralis_Contig11.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MPEGSDAGVGNNELAQQLIAMLEAQQKAQQEVKAKLTERIESLEIRSPAR
AAEVVQQGESPGSGEAAPGVQQGRHAGAPLRVLVPPPSAVGSTEPLRVGQ
SRGEVD
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mRNA from alignment at P-littoralis_Contig11:394216..394822-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.70.1 ID=mRNA_P-littoralis_Contig11.70.1|Name=mRNA_P-littoralis_Contig11.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=607bp|location=Sequence derived from alignment at P-littoralis_Contig11:394216..394822- (Pylaiella littoralis U1_48)
TGTTCGTATATTGCGTATGTAGTCGGGTTTTTTGGCTGCGTGACCGTTTC
GGGGTTCCGCGGAAAGGGATCTGTGAGGTAGCGTATGTACAGGAGGACGA
TACAAGGAGCCACCCACGTTTCGAGAACACGGACGGGTGCCACTCTCCTT
GTTGTCTCCTCCCTCCAACCCTGTTAATCCGATCAAGTGTCCCACCATCT
GGTTCCTCAGCCCTGTGAATAAATAAGGGCGCATCAACCTATCAACACTC
TAGAGTTCCTTCGCGCGGAGGAGCCCATTCGCAGCGGCGATGCCTGAAGG
ATCAGATGCGGGTGTGGGAAACAACGAGCTGGCTCAACAACTGATCGCGA
TGCTTGAAGCGCAGCAAAAGGCACAGCAAGAAGTGAAGGCAAAGCTGACG
GAGAGAATAGAGAGCCTGGAGATTAGGTCGCCAGCGAGGGCGGCGGAGGT
TGTACAACAAGGAGAGTCACCAGGGAGCGGCGAGGCCGCTCCGGGCGTAC
AGCAGGGACGCCACGCAGGGGCGCCGTTGCGCGTCCTGGTACCCCCGCCC
AGTGCGGTTGGATCGACGGAACCCCTTCGAGTCGGACAGTCCCGAGGTGA
GGTAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:394216..394822-

>mRNA_P-littoralis_Contig11.70.1 ID=mRNA_P-littoralis_Contig11.70.1|Name=mRNA_P-littoralis_Contig11.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig11:394216..394822- (Pylaiella littoralis U1_48)
ATGCCTGAAGGATCAGATGCGGGTGTGGGAAACAACGAGCTGGCTCAACA
ACTGATCGCGATGCTTGAAGCGCAGCAAAAGGCACAGCAAGAAGTGAAGG
CAAAGCTGACGGAGAGAATAGAGAGCCTGGAGATTAGGTCGCCAGCGAGG
GCGGCGGAGGTTGTACAACAAGGAGAGTCACCAGGGAGCGGCGAGGCCGC
TCCGGGCGTACAGCAGGGACGCCACGCAGGGGCGCCGTTGCGCGTCCTGG
TACCCCCGCCCAGTGCGGTTGGATCGACGGAACCCCTTCGAGTCGGACAG
TCCCGAGGTGAGGTAGAT
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