mRNA_P-littoralis_Contig108.70.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig108.70.1
Unique NamemRNA_P-littoralis_Contig108.70.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.140e-23
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  156 HSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAF 383
            H+     I    V ERA    ITTK  RNQACY+AGT LNA G GVQL+RQECFT+ACRAVWP D+PL  +V+AA 
Sbjct:  121 HAEHIANIDVTMVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDDQPLPVAVLAAL 196          
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.870e-20
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  156 HSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVA 377
            H+     I    V ERA    ITTK  RNQACY+AGT LNA G GVQL+RQECFT+AC AVWP D+PL  + +A
Sbjct:   91 HAEHIANIDVTRVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDDQPLPAAKLA 164          
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.390e-20
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  156 HSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAF 383
            H+     I    V  RA    ITTK  RN+ACY+AGT LNA G GVQL+RQ+CFT ACRAVWP D+PL  +V+ A 
Sbjct:  102 HAEHIANIDVTMVETRAAGAEITTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPLPAAVLDAL 177          
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.490e-18
Identity = 41/65 (63.08%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  156 HSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGD 350
            H      I    V ERA    ITTK  RNQACY+AGT LNA G GVQL+RQECFT+ACRAVWP D
Sbjct:  225 HGEHIANIDVTMVKERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289          
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.280e-15
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  204 ARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAF 383
            AR GS      RNQACY+    +NA G GVQLKR+ECFT  CRA+WPG      SVV AF
Sbjct:   38 ARSGSTAANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAF 97          
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.150e-15
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  204 ARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAA 380
            +R GS      RNQACY+    +NA G GVQLKR ECFT A RAVWPG+E ++ SVV A
Sbjct:   38 SRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEA 96          
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.760e-14
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 3
Query:  204 ARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVV 374
            +R G       RNQACY+ G  +N  G GVQLKR +CFT ACRAVWPG+E ++ SV 
Sbjct:  103 SRSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASVA 159          
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K1G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 6.600e-11
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 3
Query:  198 ERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAFL 386
            +R R  S+  + P  +A ++    +NA G G+Q+ R +CFT+ACRAVWPGDEP+  ++  A L
Sbjct:   15 KRGRSRSVGVRFP-TKASFDTSIQMNARGRGMQITRSDCFTQACRAVWPGDEPVPAAISDAVL 76          
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K8I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I9_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.560e-8
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 3
Query:  240 NQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAFL 386
            + A ++    +NA G  VQ+ R + FT+ACRAVWPGDEP+  ++  AFL
Sbjct:   26 SDASFDTSIQMNARGRDVQITRSDFFTQACRAVWPGDEPVPAAIPDAFL 74          
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K7F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.410e-7
Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 2
Query:   68 PPPPLPKITNLEERRAAAKQHPGLYGVHHAQFIGNIYII*CCRGEGS*RFDHDEESTQPGLLRGGNGAERNGARSPAQEAGVLHKSMP 331
            PP PLP I+ L ER+AAA+QH GL G +H++ I NI +                   Q  LLR  +G +R      A+EAGVLH  +P
Sbjct:   63 PPGPLPDISELPERQAAARQHAGLCGKYHSEHIANIDVTMVEERAAGTEITTKRMRNQC-LLRRRDGVQRPRPWGSAEEAGVLHPGLP 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KJS7_9PHAE6.140e-2360.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD0_9PHAE3.870e-2058.11Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXC7_9PHAE5.390e-2055.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE6.490e-1863.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T9_9PHAE1.280e-1556.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE3.150e-1557.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE3.760e-1454.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G2_9PHAE6.600e-1142.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I9_9PHAE1.560e-846.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7F9_9PHAE2.410e-739.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig108contigP-littoralis_Contig108:224350..225065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size418
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789408.2316742-UTR-P-littoralis_Contig108:224349..2243751680789408.2316742-UTR-P-littoralis_Contig108:224349..224375Pylaiella littoralis U1_48UTRP-littoralis_Contig108 224350..224375 -
1680789408.2646468-UTR-P-littoralis_Contig108:224925..2250651680789408.2646468-UTR-P-littoralis_Contig108:224925..225065Pylaiella littoralis U1_48UTRP-littoralis_Contig108 224926..225065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789408.2430625-CDS-P-littoralis_Contig108:224375..2245221680789408.2430625-CDS-P-littoralis_Contig108:224375..224522Pylaiella littoralis U1_48CDSP-littoralis_Contig108 224376..224522 -
1680789408.2554443-CDS-P-littoralis_Contig108:224820..2249251680789408.2554443-CDS-P-littoralis_Contig108:224820..224925Pylaiella littoralis U1_48CDSP-littoralis_Contig108 224821..224925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig108.70.1prot_P-littoralis_Contig108.70.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig108 224376..224925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig108.70.1

>prot_P-littoralis_Contig108.70.1 ID=prot_P-littoralis_Contig108.70.1|Name=mRNA_P-littoralis_Contig108.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MVFTTHSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPG
VQLKRQECFTKACRAVWPGDEPLQKSVVAAFLR*
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mRNA from alignment at P-littoralis_Contig108:224350..225065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig108.70.1 ID=mRNA_P-littoralis_Contig108.70.1|Name=mRNA_P-littoralis_Contig108.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=716bp|location=Sequence derived from alignment at P-littoralis_Contig108:224350..225065- (Pylaiella littoralis U1_48)
CTTCTGCGGGGGGCCACAACAGCCGCGACGCTTGCCGTCGCCCGCTGCCT CTGTACGCACGAGACGCCCCCCCCCGCCGCTGCCTAAAATTACGAACTTG GAAGAAAGGAGAGCCGCGGCTAAGCAACACCCCGGACTTTATGGTGTTCA CCACGCACAGTTCATCGGCAACATATATATCATATGATGCTGTCGTGGAG AGGGCTCGTGACGGTTCGATCACGACGAAGAATCCACGCAACCAGGTACA GCAGTAAGGAAAACTAAAAACATACGAAGTATGTATGGTGTACTGCCGTG GACAATATGATACTACCGCTGTAGCAGCAGTATTTAGAAGGCCCCAGCAC GCCGAAAAACTCCAATCCGAATACTTGAGAAGTACTACTGTACCTGGCAT TTCGGCAATATTTCATACCAGGTAATGTAATTGGTATCATATGATATGAT ACTAATGTACTCATGATGCTATATACTGCGCAGTACGATTATATGTACAG CAGTATTGAAAGAAACAGCGTGCGTGTTCCCAACAATATTCAGGCCTGCT ACGAGGCGGGAACGGGGCTGAACGCAACGGGGCCCGGAGTCCAGCTCAAG AGGCAGGAGTGCTTCACAAAAGCATGCCGGGCTGTGTGGCCTGGTGATGA ACCTCTGCAAAAGTCCGTTGTTGCGGCTTTCTTGCGCTGATACCAAGCCG ATCCAGATCGGAGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig108:224350..225065-

>mRNA_P-littoralis_Contig108.70.1 ID=mRNA_P-littoralis_Contig108.70.1|Name=mRNA_P-littoralis_Contig108.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig108:224350..225065- (Pylaiella littoralis U1_48)
ATGGTGTTCACCACGCACAGTTCATCGGCAACATATATATCATATGATGC
TGTCGTGGAGAGGGCTCGTGACGGTTCGATCACGACGAAGAATCCACGCA
ACCAGGCCTGCTACGAGGCGGGAACGGGGCTGAACGCAACGGGGCCCGGA
GTCCAGCTCAAGAGGCAGGAGTGCTTCACAAAAGCATGCCGGGCTGTGTG
GCCTGGTGATGAACCTCTGCAAAAGTCCGTTGTTGCGGCTTTCTTGCGCT
GA
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