mRNA_P-littoralis_Contig108.70.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 6.140e-23 Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 3
Query: 156 HSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAF 383
H+ I V ERA ITTK RNQACY+AGT LNA G GVQL+RQECFT+ACRAVWP D+PL +V+AA
Sbjct: 121 HAEHIANIDVTMVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDDQPLPVAVLAAL 196
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 3.870e-20 Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 3
Query: 156 HSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVA 377
H+ I V ERA ITTK RNQACY+AGT LNA G GVQL+RQECFT+AC AVWP D+PL + +A
Sbjct: 91 HAEHIANIDVTRVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDDQPLPAAKLA 164
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.390e-20 Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 3
Query: 156 HSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAF 383
H+ I V RA ITTK RN+ACY+AGT LNA G GVQL+RQ+CFT ACRAVWP D+PL +V+ A
Sbjct: 102 HAEHIANIDVTMVETRAAGAEITTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPLPAAVLDAL 177
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 6.490e-18 Identity = 41/65 (63.08%), Postives = 44/65 (67.69%), Query Frame = 3
Query: 156 HSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGD 350
H I V ERA ITTK RNQACY+AGT LNA G GVQL+RQECFT+ACRAVWP D
Sbjct: 225 HGEHIANIDVTMVKERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.280e-15 Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 3
Query: 204 ARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAF 383
AR GS RNQACY+ +NA G GVQLKR+ECFT CRA+WPG SVV AF
Sbjct: 38 ARSGSTAANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAF 97
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 3.150e-15 Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 3
Query: 204 ARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAA 380
+R GS RNQACY+ +NA G GVQLKR ECFT A RAVWPG+E ++ SVV A
Sbjct: 38 SRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEA 96
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 3.760e-14 Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 3
Query: 204 ARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVV 374
+R G RNQACY+ G +N G GVQLKR +CFT ACRAVWPG+E ++ SV
Sbjct: 103 SRSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASVA 159
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K1G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G2_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 6.600e-11 Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 3
Query: 198 ERARDGSITTKNPRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAFL 386
+R R S+ + P +A ++ +NA G G+Q+ R +CFT+ACRAVWPGDEP+ ++ A L
Sbjct: 15 KRGRSRSVGVRFP-TKASFDTSIQMNARGRGMQITRSDCFTQACRAVWPGDEPVPAAISDAVL 76
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K8I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I9_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.560e-8 Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 3
Query: 240 NQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQKSVVAAFL 386
+ A ++ +NA G VQ+ R + FT+ACRAVWPGDEP+ ++ AFL
Sbjct: 26 SDASFDTSIQMNARGRDVQITRSDFFTQACRAVWPGDEPVPAAIPDAFL 74
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Match: A0A6H5K7F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F9_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 2.410e-7 Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 2
Query: 68 PPPPLPKITNLEERRAAAKQHPGLYGVHHAQFIGNIYII*CCRGEGS*RFDHDEESTQPGLLRGGNGAERNGARSPAQEAGVLHKSMP 331
PP PLP I+ L ER+AAA+QH GL G +H++ I NI + Q LLR +G +R A+EAGVLH +P
Sbjct: 63 PPGPLPDISELPERQAAARQHAGLCGKYHSEHIANIDVTMVEERAAGTEITTKRMRNQC-LLRRRDGVQRPRPWGSAEEAGVLHPGLP 149 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig108.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig108.70.1 >prot_P-littoralis_Contig108.70.1 ID=prot_P-littoralis_Contig108.70.1|Name=mRNA_P-littoralis_Contig108.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp MVFTTHSSSATYISYDAVVERARDGSITTKNPRNQACYEAGTGLNATGPGback to top mRNA from alignment at P-littoralis_Contig108:224350..225065- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig108.70.1 ID=mRNA_P-littoralis_Contig108.70.1|Name=mRNA_P-littoralis_Contig108.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=716bp|location=Sequence derived from alignment at P-littoralis_Contig108:224350..225065- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig108:224350..225065- >mRNA_P-littoralis_Contig108.70.1 ID=mRNA_P-littoralis_Contig108.70.1|Name=mRNA_P-littoralis_Contig108.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig108:224350..225065- (Pylaiella littoralis U1_48)back to top |