mRNA_P-littoralis_Contig1.272.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.272.1
Unique NamemRNA_P-littoralis_Contig1.272.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.272.1 vs. uniprot
Match: D7FT41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT41_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.320e-33
Identity = 65/99 (65.66%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:  655 GIVDLHAEWPVVRKMGKVAATTLPLDGGAGTDGGAFGGDDAVPITYEAAIERFCEQSFLSSNQQRVCYSIAPFAAEVGKWLGLGVPPDRICRKLGKRNP 951
            G VDLH EWP+VR   K  + +   D G   D      D+A+ ITYEAAIER+CEQSFLS +QQRVCYSIAPFAAEVGKWLG+GV P+R+CRKLGKRNP
Sbjct:    6 GFVDLHTEWPLVRSTNKEVSRSS-RDRGDDDDATVRRQDEAMSITYEAAIERYCEQSFLSGSQQRVCYSIAPFAAEVGKWLGMGVSPERVCRKLGKRNP 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT41_ECTSI3.320e-3365.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1256571..1263096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps21600
PFAMsArmet
Model size1434
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons6
Evalue1.61e-05
EggNOG OGsKOG4154@1|root,KOG4154@2759|Eukaryota,2XCUD@2836|Bacillariophyta
DescriptionDegradation arginine-rich protein for mis-folding
Cds size588
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.272.1prot_P-littoralis_Contig1.272.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1256898..1262577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789318.5481436-UTR-P-littoralis_Contig1:1256570..12568971680789318.5481436-UTR-P-littoralis_Contig1:1256570..1256897Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1256571..1256897 -
1680789318.6139655-UTR-P-littoralis_Contig1:1262577..12630961680789318.6139655-UTR-P-littoralis_Contig1:1262577..1263096Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1262578..1263096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789318.5579734-CDS-P-littoralis_Contig1:1256897..12570531680789318.5579734-CDS-P-littoralis_Contig1:1256897..1257053Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1256898..1257053 -
1680789318.566466-CDS-P-littoralis_Contig1:1257505..12575801680789318.566466-CDS-P-littoralis_Contig1:1257505..1257580Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1257506..1257580 -
1680789318.5747652-CDS-P-littoralis_Contig1:1258108..12581751680789318.5747652-CDS-P-littoralis_Contig1:1258108..1258175Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1258109..1258175 -
1680789318.5831578-CDS-P-littoralis_Contig1:1261534..12616891680789318.5831578-CDS-P-littoralis_Contig1:1261534..1261689Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1261535..1261689 -
1680789318.5981288-CDS-P-littoralis_Contig1:1262052..12620721680789318.5981288-CDS-P-littoralis_Contig1:1262052..1262072Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1262053..1262072 -
1680789318.6063318-CDS-P-littoralis_Contig1:1262462..12625771680789318.6063318-CDS-P-littoralis_Contig1:1262462..1262577Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1262463..1262577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.272.1

>prot_P-littoralis_Contig1.272.1 ID=prot_P-littoralis_Contig1.272.1|Name=mRNA_P-littoralis_Contig1.272.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
MVRYKGGRLVLAVLTVGMDCYARVGGTASTLAANGTCNVCRGVTQGIVDL
HAEWPVVRKMGKVAATTLPLDGGAGTDGGAFGGDDAVPITYEAAIERFCE
QSFLSSNQQRVCYSIAPFAAEVGKWLGLGVPPDRICRKLGKRNPETCFDA
REAERPSDATDPLLDWRSRPPSIPDGVHCSIEHRNSLSPRWVLLD*
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mRNA from alignment at P-littoralis_Contig1:1256571..1263096-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.272.1 ID=mRNA_P-littoralis_Contig1.272.1|Name=mRNA_P-littoralis_Contig1.272.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6526bp|location=Sequence derived from alignment at P-littoralis_Contig1:1256571..1263096- (Pylaiella littoralis U1_48)
AGAAAACATGCGAACACGCTGACGCGGGGATAAGTATGAAATGTCCCCGA
GGTAATAAAACCCGCCGATATTTTAGACGCAGTCATGCAGTCATTCTACG
CGGCGTTTTACAGGCAATTTCAAATTTTCTGCACACGTTTCACATCATCT
TGGGTACTGGGTACGAAAAAGCTGCACTGTATTGTTGGAGCTCGCGCCTC
GTACTATTTTGATCTACTCGCTAGAGGTGGCAGGTGGCCCCACCACCCCC
CTAAAACGGCAAAGCGGAATTGGTTGGCGAGGTCGTCAAACAAATAAAAA
TAGAAATGGATTCGGGTATGCGGCGAAACAAGTAATACCCATAAACGTCC
CGAAGGATTACTCTTTTTCTTCGGACGGGTTTAGAACCTCCTATTTAGAC
GTTTCAGAGAGAACCAACAAGTCGATTGGACTTCTCGATTCACCACTGCT
GTCTGTTACGTAGACAGGGAGCAGGGTGCAATATTTGTTATCATCTTCGG
GTGCAGCCCCAGGAACTTGATGGTGCGGTACAAAGGAGGTCGACTCGTGC
TGGCCGTGCTGACGGTTGGTATGGACTGCTACGCCAGGGTAGGAGGGACG
GCATCGACATTGGCCGCCAACGGTACCTGTAATGGTGAGCCCTTTTGTGG
CCGCAATCATTTTTGTTGTAAAAAAAGCCGCACACGTGCCTTGTTGTGTC
GCAGAATATCGGTCATTTTTGCATTACAGGCTACAAGATCTCGTAAGGCC
GGTGGCTGGATCTCCGTTAGTTTGCTCTCTTATATAATATGCTCTCTTAA
CCTCCAGTTCGGGGGTGTGTTGCCTCTCTTCATGGTTGGTATTTATACAT
ATGTACCTCACGAGCGACACGATGAAACCCACAGTTAGTCAGCTCTTCTT
GTCCAGCTGGAGATAGTTTCGTTGAGTTTTCATACGATATTCGCTCTTTC
TGCCCATCCGCCCTTGCCTGTTGTGGTCGTGCGTATTTTGACTGTTCGTT
CTGCCCATCGCAACGTCCGGGCAGTATGTCGGGGAGTGACACAGGTGAGA
GGATGCGTTTGCGTGGCATTCGGTGGTAACACGTACAGGTACTGAGAGCG
CATTCTCTGGACACGAGTGGGTTGATGATACTCTATCGGCAGACCGAAGG
GTGCGCCACCACCGGGATTGTATAACAAACGGCACAACAGCTTACTCGTA
CCGGGGGATGAAGCCGGGCGAATGATTTTGCTGGTTTGATTTGTCTCTCG
TGGATGTATTTAACGTTGTGACACACAACACCATAGATGCTTGACTGGAG
AGGGAGGACCCTCTTGCACCTTTCAGGCGGGCTGTATCAATATCCAGCAC
ACATTTCCGTTTGAGTTGTTTCAATTCCGCCCGGCGCGAAATTACGCGAA
ATACAAGGGGATTGTGGACCTCCACGCCGAGTGGCCGGTCGTGCGCAAGA
TGGGGAAGGTGGCGGCCACAACTCTTCCGCTGGACGGAGGGGCAGGCACT
GACGGCGGTGCTTTTGGTGGGGACGATGCGGTGCCAATCACGTATGAAGC
CGCGATTGAGAGGTAGGTGGGCTTTTTTACACTTGTTGCTGCCGAGTGTA
TGCGTCGTCCGTCGCTTTTCGGGGGAGGTGTGGCCACAGATAGATGCAGG
CACACCAGGCGCCAAGCACCCGGCTCCAATAGTCAAGATAAGCGCCTCAA
GAGCACTTCGTTCCACAGGCTACACGTAGCTGTTCCACCATGATCCGAAA
CTATCAAATCGCGAACCAACCTTTGATCGCCTCTGAAGGCGGGGGGCAGT
GCCCGACCACGGGTGGGTGTATCCACTTTCATTACCTCACGGCAAAATTC
GGGATCGTTCGCAGTGCCGCCAGCAGAGGCGGCAGGCATACGCTGTGCAT
GCCCATGTGAGATGGCGTGCAACTAAAACGGCCGGAGGTTGCCGGAGTCC
TGGTGTGCATCACCGATCACCGCGCTGTGGGTGGCAGAGGCTAAAGCGCC
CGGCCGCCGTAAGGCTAAGCCCCTCTGCTGTAAAGTCAGCAGGAAAAATC
GAGAGATGCCACAGTGGGCTCTCTGCTAAGCCGAAGCTCGGAGAAGATGG
TTGTTGTGCTGGTAACTCTGACCAGGCTTTGTTGATTATTTGGGTAGACG
ATGAGAGAGAGTGAGAGTGGGGCGGGCAAGCCATGCACACTCCTCGAGCT
CTCCAAAACAAAATCTTGACTCAAAAACAAAATAAACCAACGGACTATTC
GGGGTCATGGTTCTCCGGGTCACCGCCCTGCTATTCCCCCGAAGGTTCTA
CTGAAACGGTTTTTTACCAACCGCTCTACAGTTTCCTGTTAGTACTTCGC
CTGAACTAAGCAGAAGTGCTGCTGAGCTACATACATACACACATCATGTA
TATACTTCTTGCTGATAGTAAACGTACACTATTCATCGACAGCGAACCAG
TAGGGCTGCTATGTATTACTGCTTCGTGCAACTACACCCTCTGTAACAGC
GGTGTTTGCTGTATATACTTTCAGCTACTCGAGCTACCTATTCTGTACAG
CAGTACAGCAGTACATGCCTCAAAGCAGAGCCTGTATCTAACACGACCCC
TCGATGGTGATGGCATAGTTTACTTTTACACTTGTCCAACTAACTGAACT
AAGATCAATATTATTGTAGACTATTCTCTCTACTTTTAGAACCAACGCTC
TTTTAAAAAATACCTGTCTACGGTTTTACGTTTGGAGTGAGATATCGTTC
GGCCCAAACACAGGTTCATTACATCTCTGTCGCTTCCGGACAACCCAAAC
CGTTCCTGCTTTGCCAAGACGGGTAATTCATCCTTCTCTCACAACAACGT
ACGTGCTACTTCGACGGGTACCAGACATGCACGTTGCTTACATGCAGGCT
TCATTGCTTCGTTCAGTCCTTGCTATTTCATGCATGTTTCCTTCATGTAA
ACTCTCCGGCTATCATACGAAGACTACTACTCCGTTCATTGTTGTTTCGA
TACGTACGGTGTGTGATGGCGTTACGGTCCATCACCTCTCTTTCTTCCTT
TTTTTATTTAAGTCGGTGCGACCCCAGCTTGACGTTCTTGTGGCGGTCCC
CGAATGATGATGTTGCGGCGTCCCAGAATCTTGTTCCGGCAACCCATAGT
AGTACTGTACGGCGTCCCAGATGTTCCAGCAACCCGAAGTGATTGCGGCG
TCCCAGATGTTCCGGCAACCCGGAGTGATTTATTATTTGGTGGACGAATC
TCTCGAAAACATCGCCCCGAGAACTCCACGGACTACCGAAGCGACCCGAT
TTCACGGCATCCAAGCGGCAGCGCTGTAAATGTTCCAGAATGTGTCTTTC
CGTGAACGCCAAGCGGCTTTTGTTTTCTGTGGTACAATCCCGGAGACATC
TCCCGACGATCCCACGTAATACCGAAGCGACCCGATTTCACGGCATCCAA
GCGGCAGCACTGTAAGCATTCCAGAATATGTCTATCCCGTAACGCCAAGC
GGCTTTCGTTACTGTCGAAGCGACCCGGTATTTCACGGCATCCAAGCGAC
AACGCTGTAGACATTCCAGAAGATACTTTTCTGGCAACCCCAAGCGGTTT
TTGTCACTGTCGAAGCGACCCGATGTTTCACGGCATCCAAGCGACAACGC
TGTGGGCATTCCAGAAGGTACTTTTCCGGCAACCCCAAGCGGTTTTTACG
GCGGTTTTTGTAGCTGATGTGGCAGATAAGTGTTCCTTCAGCAGTCCCAG
CCAGACGACCCCTGGCTTCTTTCTTGAGTATTCTCTCGGGCGAAACTGTT
CGCTATCTAGGACATGGAGCCCCCGTCGAAGTCATCAGCCACCGTTTACT
CCAGACTCACTCCCTGCGTGTGCTGTGGCATTCTTTGCTGCTGCACCGAT
TCTCTCCCGCTCCACCCTTCCCACTGAGAGCTTTTCTTGTCGATATTTCG
CTCCTAGTAGACGTAGCGCAGCCTCTCTGGTAGTGTCCAGCCATCCATGC
TGCAGTAGAAGTTGTGGTAGATGGTGGGGCCCCGTTCTCGGCTTTTCTTT
GATGCTGCTGCGACCGTGCCGACCCCTGAAACTGGAAAATACGCACGGCA
TTCTTCTTGTACTGACGATCTTCACGCCTCTCAGATGATTGATCATGTCC
GTGCGTGCTGCTGGTGGAGACTTGAAATACTCCAGCAGTTGAGCGGTACT
CTCCTCTCCTGTACAGCAGCAGCAGAGAGCGTGCGTTCCTTCTGTACTTT
TCTGAAAGTTCCGTTTCGGCAAGACGACTCACGTTTGTTTGGTTCTCGAA
AAATGGTTCTAGTTCCGTTCCACAGAAAGCACCTCTGCGGTTGACTTTTC
TCGTCAACTCACTTCTGAAGCAGCTGGTCAGGGCTCAAGCGCAGTCTTCA
CACGATATACCTGATGGCCCGTAGCTCTGTAGTTCGTTATTCGGTGCACT
CGACACTTGATACACAAAAACTGTTGTAGTTGGCCTGTTGCTCTGATGTC
GGACTTCTTGGAAGATCTTGACTTGATGTCTTGCTCGATCCGCGCTCATC
CTCTTTGACGAATGAAGCGTGAGGGCTGCCCGCTGCTGCTTGCACGCTGC
AGTCTGATACTTCCAAGCTCCTCTGGCGCTAACGCAATGCAAGGCTCATA
ACCTGTCGGAGACCTGGCGGCGCTATAGCCTCTGCCACCCACAGCGCGGT
GATCGGTGATGCACCACCAGGTCTCCGACAGAGGTCACAATGCTTTTTCT
GTACTGTAGTGTGAGAATGAGCTTTGCTCACACAATGTGATCGTTGCATG
TTTGTTTTGGCGCAGGACATTGTTTGGGGCTGTTTCAAATCGTGTTTCGT
TCACCCTCTTTCGGTTGCTCGTGTGTTTTTCGTGCCGCCCTGTTTTATTT
GTGATTTTGTGGCGGCCTCAGATTTTGCGAGCAGTCATTCCTGAGCAGCA
ATCAGCAGCGAGTTTGCTACTCTATCGCCCCGTTCGCGGTAAGTGGGAGG
AGACTGTTGACCCCGATTGCTGATTTGATAACGCTGTCCGTTGGTGCTGC
TGACTGTTGGTGTGTTTCGGGCCAATTACAGGACTGTCTGAACAACGAAT
TCGAAACACGGCGTAGGTCGAGCTCCTGTATAGTGACCCCACCATTCGTC
TAATTGTTTACTATTATACCAGGTATGTCGTTTTGCCCCGATGCTACACG
TACGTGGTGAATGTGCGATAAAGTTTTGCTTTGGAGAGCTTCCTGTGGTC
TGTAAACAAATCACACAGAGTACGATACGAGCACCCCAAGGAAAATGTCG
TGCTCTTGCTCGTTGATGTGGATCTACAAATACGTACACCAGGTACGGTG
ATGAGACCACAACACCCACCGTGCAGGCATGTGCACTTTTTGTAGAGTAA
GGGTTTTGTAGCTGAGAGACACGAGGCCTCCGGCTACCACCTTAGTTCAG
TATCGGGATGCATGCCTGATTGTATAATATTTGTGTGCGTGTGTGCATTG
GTCGCCCCGTTCTCAGGCGGAAGTTGGAAAGTGGCTCGGTCTGGGGGTTC
CGCCAGATCGCATTTGCCGCAAGCTCGGAAAGCGTAACCCGGTGAGCGCG
GGACGGGATCATGCGATTTATTTCATATTTCCACCCTTGTTGTATTTTAC
ATGATGATAAATGGGTTCGCTAGACTATCTTTCGGGCCTTCTGGTCAGCC
ACAATAAAATTCCCAACGAGGCACAACTTTCTTCGCGGTTTCAATGCGTC
GGGCGCAAACTGTCCACAATCTGTGCGTCGAGTCGGTTTCCGAGGGGATA
GCACCGGCAGCACAAAAATACGTAAATCACATTCACCATATCGGCAGTAC
GATGGTGGCAAAAAACTCTCGTTGGCCACAACGACGTACCTCATACATCA
CCAAGAGCAGTACAGTAGTCATAGCAAAAATGGGCGAGATTTTGCATTCC
CGTGTTACTCCGTAGTTTTTTATGATGACCATTTCATTGTTGTGTTCCTC
GGGGAGCCGAGACGTCATCCGCCAAAAATGCCACGAAAAACAGGAGACAT
GCTTCGATGCAAGAGAGGCCGAGCGACCGTCAGATGCCACGGATCCGCTG
CTGGACTGGCGAAGTCGGCCGCCATCAATCCCTGACGGAGTACACTGCTC
CATCGAGCATAGAAATTCCCTGTCTCCACGCTGGGTGCTTTTGGACTAAC
TGGAGGGAATACTTTCTGCGCCGCCGCCCTTAGAATAAAAAGCGAATATG
ATACTGTTGAACTCCTTGGGACCTGCACTGTCAACAATAATTCGCAGTCT
ATATTTATTGGGGTGGGACTCAAAGAAAAGAGGAAGCAGTTCGTGTGTGG
CATGCCACGTAAAAGAAAAAACTATTCGGAACACTCCAAAAGGGGTGCAC
TATTCTTAAGGACAAGCTACTTGAAAATCCTTGGCGATGCCCCCCCTGAC
TGCTGTGCGCTTCATTTCTCTTCCCTACCTATAAATATTCGTATCTTCCC
CTTCCCCGTGACGCCTAAAGAAAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1256571..1263096-

>mRNA_P-littoralis_Contig1.272.1 ID=mRNA_P-littoralis_Contig1.272.1|Name=mRNA_P-littoralis_Contig1.272.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig1:1256571..1263096- (Pylaiella littoralis U1_48)
ATGGTGCGGTACAAAGGAGGTCGACTCGTGCTGGCCGTGCTGACGGTTGG
TATGGACTGCTACGCCAGGGTAGGAGGGACGGCATCGACATTGGCCGCCA
ACGGTACCTGTAATGTATGTCGGGGAGTGACACAGGGGATTGTGGACCTC
CACGCCGAGTGGCCGGTCGTGCGCAAGATGGGGAAGGTGGCGGCCACAAC
TCTTCCGCTGGACGGAGGGGCAGGCACTGACGGCGGTGCTTTTGGTGGGG
ACGATGCGGTGCCAATCACGTATGAAGCCGCGATTGAGAGATTTTGCGAG
CAGTCATTCCTGAGCAGCAATCAGCAGCGAGTTTGCTACTCTATCGCCCC
GTTCGCGGCGGAAGTTGGAAAGTGGCTCGGTCTGGGGGTTCCGCCAGATC
GCATTTGCCGCAAGCTCGGAAAGCGTAACCCGGAGACATGCTTCGATGCA
AGAGAGGCCGAGCGACCGTCAGATGCCACGGATCCGCTGCTGGACTGGCG
AAGTCGGCCGCCATCAATCCCTGACGGAGTACACTGCTCCATCGAGCATA
GAAATTCCCTGTCTCCACGCTGGGTGCTTTTGGACTAA
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