prot_P-littoralis_Contig1.262.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1.262.1
Unique Nameprot_P-littoralis_Contig1.262.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length458
Homology
BLAST of mRNA_P-littoralis_Contig1.262.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 4.120e-80
Identity = 227/354 (64.12%), Postives = 249/354 (70.34%), Query Frame = 0
Query:  109 MMKALKTSSDVDTVIFHNAGLTEASVAVLVGGLQLTSVRSLGLDYN-----LPSSPSLVRPSASERRLKAAMRAAEARGNTMENEVASTTPSSRPDFAGLVREGSKLKALSLRGNGLGDADAVDLAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAEAFGLLLAGGYEISAVEQEKRALVEAKIVAQNKIAQDAMKKKKDARVETRLPLSTVVVQTAGDGINRAVAGGSRSLATLNLGENRELGAGGALLGLLARIVEARKEEVDKAASGAAGVVGSGAGAVVLQELHLARCQEYAEQEVGGGEHAAAAAGGDQAGMFAAMSLALRPTKVVL 457
            MM+ALK SSDVDTV FHNAGLT AS+ VLV GL  T+VR   LDYN     L SS    RP  S     A   A    G +          S   +FAGLV EGSKLKALSLRGN LGDA+A+ LAE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GLLLAGGYE+   EQEKRA  + KI AQNK+A DAMKKKKDA+VETRLPLS V V+T  DG +RAVAGGSRSLA LNL +NR+LG GGAL GLL+RIV ARKEE  +A  GA    G+G G+VVLQELHL RCQ YAE+           AGG+     AAMS ALRPTKVV+
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNTLPVVLSSSSPPTRPPPSGPTEPALEEAPATEGFS----------SLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAG--FGAGGGSVVLQELHLTRCQGYAEE-----------AGGEDDTAIAAMSFALRPTKVVV 331          
BLAST of mRNA_P-littoralis_Contig1.262.1 vs. uniprot
Match: A0A836CBK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBK8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.860e-8
Identity = 56/220 (25.45%), Postives = 92/220 (41.82%), Query Frame = 0
Query:   15 AHSDPWRADKMDIAAAGMDWGAKDVQKSAGNFDADYEALCRLFEVPAHPCLGSRRPKEATEGALDAKLEKPTSASK-----PSTIQLRNYTVDLTTLHLMMKALKTSSDVDTVIFHNAGLTEASVAVLVGGLQLTSVRSLGLDYNLPSSPSLVRPSASERRLKAAMRAAEARGNTMENEVASTTPSSRPDFAGLVREGSKLKALSLRGNGLGDADAVDLA 229
            AH   W A   D+     ++      K+ G+F  DY  LC L  V  HPC+     + A  G +++      +AS+        + + N+ +D  +L L++KAL  +  V  +  HNAGL  ++VA +   L  T++ +L + +N P     V                                     FA L+ +G+ L+AL+LRG+ +  A A  LA
Sbjct:    3 AHRQLWTASDKDVNLTSKEFVN---YKACGSFKGDYLQLCSLAGVIPHPCILPAL-RTAPSGDVNSSATLSHNASRYDMKDGDRVNVSNHVLDPASLALLLKALSLNPAVTALDLHNAGLATSAVAAIAAALPTTALSALSISFN-PVDDDTV-------------------------------------FAKLLADGTALRALTLRGDAVASAGAAALA 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.262.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT35_ECTSI4.120e-8064.12Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A836CBK8_9STRA3.860e-825.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..188
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 235..262
e-value: 1.3
score: 16.2
coord: 263..290
e-value: 18.0
score: 8.3
coord: 207..234
e-value: 9.6E-4
score: 28.4
NoneNo IPR availablePANTHERPTHR46984LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71coord: 198..328
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 199..292
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 86..331
e-value: 3.7E-21
score: 77.0
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 235..257
e-value: 0.0041
score: 17.1
coord: 209..229
e-value: 0.15
score: 12.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1215223..1219555 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.262.1mRNA_P-littoralis_Contig1.262.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1 1214787..1219909 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1.262.1 ID=prot_P-littoralis_Contig1.262.1|Name=mRNA_P-littoralis_Contig1.262.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=458bp
MAEVDVLLCPSTKVAHSDPWRADKMDIAAAGMDWGAKDVQKSAGNFDADY
EALCRLFEVPAHPCLGSRRPKEATEGALDAKLEKPTSASKPSTIQLRNYT
VDLTTLHLMMKALKTSSDVDTVIFHNAGLTEASVAVLVGGLQLTSVRSLG
LDYNLPSSPSLVRPSASERRLKAAMRAAEARGNTMENEVASTTPSSRPDF
AGLVREGSKLKALSLRGNGLGDADAVDLAEAIEENTVLCSLNLFDNKITD
VGATTLAKTLRLNTVLRGLSLSRNSLTSASAEAFGLLLAGGYEISAVEQE
KRALVEAKIVAQNKIAQDAMKKKKDARVETRLPLSTVVVQTAGDGINRAV
AGGSRSLATLNLGENRELGAGGALLGLLARIVEARKEEVDKAASGAAGVV
GSGAGAVVLQELHLARCQEYAEQEVGGGEHAAAAAGGDQAGMFAAMSLAL
RPTKVVL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt