mRNA_P-littoralis_Contig1052.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1052.10.1
Unique NamemRNA_P-littoralis_Contig1052.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.310e-51
Identity = 77/143 (53.85%), Postives = 100/143 (69.93%), Query Frame = 1
Query:  145 ELPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEESPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEAC 573
            ++PTPD +GY  GN+ ACH Q +  + A++ + +  S L RAFAFE+A++VG  YC H      +  M+LA  KKAAA HPGLCGVHHA +IA V+T+DV  + G T ANK+RNQAC+DG +A+N RG GVQL RA CF  AC
Sbjct:    2 DMPTPDVEGYKAGNTMACHGQRVSLIAANTPAEEGTSTLLRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDVTSRSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHAC 144          
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 7.260e-50
Identity = 76/141 (53.90%), Postives = 101/141 (71.63%), Query Frame = 1
Query:  148 LPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEESPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEA 570
            +PTPD +G   GN+ ACH Q +  + A++ + +  S L RAFAFE+A++VG  YC H      +  M+LA  KKAAA HPGLCGV+HA +IA V+T+DV  + G+T ANK+RNQAC+DGA+A+NARG GVQL RA+CF  A
Sbjct:    1 MPTPDVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHA 141          
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 7.920e-47
Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = 1
Query:  244 DSESDLYRAFAFEIASQVGGRYCRHVEESPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEAC 573
            +  +D+ RAFAFE+AS+VG RYC HV     LEDMS AK+KKAAA+HPGLCGV+HA +IA V+TQDV +KW  TT NKYRNQAC++GA A+NARGAGVQLPRA+CF  AC
Sbjct:  104 EENTDVGRAFAFEVASKVGARYCSHVSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQACYNGAEAVNARGAGVQLPRAECFTRAC 213          
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.540e-46
Identity = 75/152 (49.34%), Postives = 102/152 (67.11%), Query Frame = 1
Query:  115 TNQYKLKQMAELPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEESPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEA 570
            + Q   K    +P P+ +G   GN+ ACH Q +  + A++ + +  S L RAFAFE+A++VG  YC H      +  M+LA  KKAAA HPGLCGV+HA +IA V+T+DV  + G+T ANK+RNQAC+DGA+A+NA G GVQL RA+CF  A
Sbjct:   59 STQKPPKLWTYMPPPNVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSQSGSTAANKFRNQACYDGAMAMNAHGKGVQLKRAECFTHA 210          
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Match: A0A6H5KH61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH61_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.050e-41
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  139 MAELPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEESPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            M +LPTPD + YVGGN QAC+ Q ++ + A  +  ++ +D+ RAFAFE+ S+VG RYC H+     LEDMS AK+KKAAA+HPGLCGV+HA +IA V+TQDV +KW  TT NKYRNQ
Sbjct:    1 MEDLPTPDIEAYVGGNQQACYVQLVDVLSALPAGEEN-TDVGRAFAFEVPSKVGARYCSHLSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQ 116          
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Match: A0A6H5KQB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 5.390e-35
Identity = 64/130 (49.23%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  145 ELPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEESPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAG 534
            ELP PD + Y  GN++              S   + ++L RAFAFEIA+ VGG YC H+ E   +  M+ +  K AAA HPGLCGV+HA ++A VKTQDV  + G+T  NKYRNQAC DGA+ +NARG G
Sbjct:    2 ELPAPDVEAYKAGNTRPATIMVSLIANNPPSEDGTNNNLARAFAFEIAAAVGGEYCDHLTEPEPMPSMAPSAAKVAAAEHPGLCGVYHAHILAAVKTQDVQARSGSTAGNKYRNQACCDGAITMNARGRG 131          
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.400e-27
Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  337 LEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEA 570
            +  M+LA  KKAAA HPGLCGV+HA +IA V+T+DV  + G+T ANK+RNQAC+DGA+A+NARG GVQL RA+CF  A
Sbjct:    1 MPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHA 78          
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.850e-25
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  337 LEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEAC 573
            +  M  A  K AAA HPGLCGV+HA +IA VK QDV+ + G+T ANKYRNQAC+DG +A+NARG GVQL R +CF   C
Sbjct:    1 MPSMKAAAAKVAAAEHPGLCGVYHAHIIAAVKIQDVLARSGSTAANKYRNQACYDGEMAMNARGQGVQLKREECFTHPC 79          
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Match: A0A6H5KUN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.680e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1
Query:  337 LEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            +  M +A  K AAA HPGLCGV+HA +IA VK+QDV+ + G+T ANKYRNQ
Sbjct:    1 MPSMKVAAAKVAAAEHPGLCGVYHAHIIAVVKSQDVLARSGSTAANKYRNQ 51          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1052.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JXX9_9PHAE3.310e-5153.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE7.260e-5053.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE7.920e-4768.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE1.540e-4649.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH61_9PHAE2.050e-4158.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB2_9PHAE5.390e-3549.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE1.400e-2764.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T9_9PHAE2.850e-2560.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUN4_9PHAE4.680e-1160.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1052contigP-littoralis_Contig1052:60650..61941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size579
Hectar predicted targeting categorysignal peptide
Exons2
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789387.5171382-CDS-P-littoralis_Contig1052:60649..611381680789387.5171382-CDS-P-littoralis_Contig1052:60649..61138Pylaiella littoralis U1_48CDSP-littoralis_Contig1052 60650..61138 +
1680789387.5324647-CDS-P-littoralis_Contig1052:61851..619411680789387.5324647-CDS-P-littoralis_Contig1052:61851..61941Pylaiella littoralis U1_48CDSP-littoralis_Contig1052 61852..61941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1052.10.1prot_P-littoralis_Contig1052.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1052 60650..61941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1052.10.1

>prot_P-littoralis_Contig1052.10.1 ID=prot_P-littoralis_Contig1052.10.1|Name=mRNA_P-littoralis_Contig1052.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=193bp
CSSATTICTSVLFLFSCGLVRRCCCCGLRPLSSPTLTQTNQYKLKQMAEL
PTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVG
GRYCRHVEESPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVD
KWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEACGA
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mRNA from alignment at P-littoralis_Contig1052:60650..61941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1052.10.1 ID=mRNA_P-littoralis_Contig1052.10.1|Name=mRNA_P-littoralis_Contig1052.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1292bp|location=Sequence derived from alignment at P-littoralis_Contig1052:60650..61941+ (Pylaiella littoralis U1_48)
TGTAGCTCCGCTACCACGATATGCACTTCTGTTTTATTTTTATTTTCATG TGGGCTGGTACGTCGGTGCTGCTGCTGCGGCCTGCGGCCGCTCTCCAGTC CAACCCTAACCCAAACAAACCAATACAAGCTCAAACAAATGGCCGAGCTA CCCACGCCCGACGCCGATGGCTACGTGGGCGGCAACTCCCAGGCTTGCCA CGCCCAATTCATAGAGTTCGTGGAAGCGGACTCCTCGTCGAGGGACAGCG AGAGCGACCTCTATCGAGCGTTTGCGTTCGAGATTGCCAGCCAAGTTGGC GGGCGCTACTGCCGCCATGTCGAGGAATCGCCCGCCCTTGAAGACATGAG CCTCGCCAAGAAGAAGAAGGCAGCTGCGAACCACCCGGGCCTATGCGGTG TTCACCATGCCGCTGTCATCGCTGGGGTGAAAACGCAAGATGTGGTGGAC AAATGGGGAACAACCACGGCTAACAAGTACAGAAACCAGGTGAGCCCAAT ACTTACTGGAACCTACATAATTATATACGGAGTGCCAGGTATACTAAAAA AAAGGCTGCTACTGCTGTACGTTCCCGATACAGCAGCAGTAATATATAGA GTACAGAGTAGCACACATACTGCTGTATGCATTCAATAAATATGACACAT ACATGCATACAGCAGTATGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTG TTGCTGTTGATAATTGCCAACTCTCTCTTTGTATGTTTATTTCAAACCGT AGACTCTAGTCTCGACTTATAATAAACATGTTGTAGACTGCCAGCACAAC ATATGTATTGCATGTGACAATAGCAGCAGCCATTGTTCTTGCATAGGCTA CGTAGTAGTCTATAGCGGTATGGAACAGCAGCAGCAGAAGTCACACTTAC TGGATAATTCACATGCCGTATAAAAACTTCGAAGCAATACATTTCATACA TGACATCAGTGGTGGTTGTAGTACATACAGAGCTTGTCTCTCCCAGCCTC CTCCCCTGTTTCAGCTGTGTAGGCGCTCTTGCGACGTCTCTTGTAGATGA CCAAATAGAACATACTCAGTATAATATACTGATGATTTACAATCGAGCCG CGTTGCATCTTGTACTCATCGTACTGCTGTTCCTGACATATCCAACTGCT GTCTCTCCTGTGCTTGGTACCGCTGTATGATGTATGCTTGAATCTTTGAC AGGCGTGCTTCGACGGAGCTGTAGCCTTGAACGCTCGCGGTGCGGGCGTA CAGCTGCCGAGGGCGCAGTGCTTTGCTGAGGCGTGTGGGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1052:60650..61941+

>mRNA_P-littoralis_Contig1052.10.1 ID=mRNA_P-littoralis_Contig1052.10.1|Name=mRNA_P-littoralis_Contig1052.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig1052:60650..61941+ (Pylaiella littoralis U1_48)
TGTAGCTCCGCTACCACGATATGCACTTCTGTTTTATTTTTATTTTCATG
TGGGCTGGTACGTCGGTGCTGCTGCTGCGGCCTGCGGCCGCTCTCCAGTC
CAACCCTAACCCAAACAAACCAATACAAGCTCAAACAAATGGCCGAGCTA
CCCACGCCCGACGCCGATGGCTACGTGGGCGGCAACTCCCAGGCTTGCCA
CGCCCAATTCATAGAGTTCGTGGAAGCGGACTCCTCGTCGAGGGACAGCG
AGAGCGACCTCTATCGAGCGTTTGCGTTCGAGATTGCCAGCCAAGTTGGC
GGGCGCTACTGCCGCCATGTCGAGGAATCGCCCGCCCTTGAAGACATGAG
CCTCGCCAAGAAGAAGAAGGCAGCTGCGAACCACCCGGGCCTATGCGGTG
TTCACCATGCCGCTGTCATCGCTGGGGTGAAAACGCAAGATGTGGTGGAC
AAATGGGGAACAACCACGGCTAACAAGTACAGAAACCAGGCGTGCTTCGA
CGGAGCTGTAGCCTTGAACGCTCGCGGTGCGGGCGTACAGCTGCCGAGGG
CGCAGTGCTTTGCTGAGGCGTGTGGGGCA
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