mRNA_P-littoralis_Contig1051.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1051.4.1
Unique NamemRNA_P-littoralis_Contig1051.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5JUA6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.280e-30
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    4 VKIVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            V +V +DNGGEF +G F  VCR+ C+KQE  P HSP++NG+AERALGLIKDAA A  IQA  ++  APN+PSLWAEA+AW
Sbjct:   38 VTVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAW 117
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.340e-27
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    4 VKIVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            V +V +DNGGEF +G F  VCR+ C+KQE  P HSP+++G+AERALGLI+DAA A  IQA  ++  APN+PSLWAEA+AW
Sbjct:   98 VMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYPSLWAEAIAW 177
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5JLU0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.910e-27
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   10 IVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            +V +DNGGEF +G F  VCR+ C KQE  P HSP++NG+AERALGLIKDAA A  IQA  ++  APN+PSLWAEA+AW
Sbjct:    2 VVRSDNGGEFFEGVFSRVCRKYCNKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAW 79
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 6.560e-27
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    4 VKIVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            V +V +DNGGEF +G F  VCR+ C+KQE  P HSP++NG+AERALGLIKDAA A  IQA  ++  APN+PSLWAEA+AW
Sbjct:  797 VMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAW 876
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 6.570e-27
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    4 VKIVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            V +V +DNGGEF +G F  VCR+ C+KQE  P HSP++NG+AERALGLIKDAA A  IQA  ++  APN+PSLWAEA+AW
Sbjct:  632 VMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAW 711
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 6.580e-27
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    4 VKIVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            V +V +DNGGEF +G F  VCR+ C+KQE  P HSP++NG+AERALGLIKDAA A  IQA  ++  APN+PSLWAEA+AW
Sbjct:  645 VMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAW 724
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 6.590e-27
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    4 VKIVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            V +V +DNGGEF +G F  VCR+ C+KQE  P HSP++NG+AERALGLIKDAA A  IQA  ++  APN+PSLWAEA+AW
Sbjct:  788 VMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAW 867
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5JBD1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD1_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.200e-26
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    4 VKIVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            V +V +DNGGEF +G F  VCR+ C+KQE  P HSP++NG+AERALGLIKDAA A  IQA  ++  APN+PSLWAEA+AW
Sbjct:  695 VIVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAW 774
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 7.810e-26
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    4 VKIVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            V +V +DNGGEF +G F  VCR+ C+KQE  P HSP++NG+AERALGLIKDAA A  IQA  ++   PN+PS WAEA+AW
Sbjct:  658 VMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPSFWAEAIAW 737
[Close]
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Match: A0A6H5KSH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH9_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 7.810e-26
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   10 IVHTDNGGEF-DGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIKDAARAGLIQAMVIFSDAPNFPSLWAEAMAW 240
            +V +DNGGEF +G F  VCR+ C+KQE  P HSP++NG+AERALGLIKDAA    IQA  ++  APN+PSLWAEA+AW
Sbjct:    2 VVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALTSRIQAPTLYPGAPNYPSLWAEAIAW 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1051.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUA6_9PHAE5.280e-3063.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7U9_9PHAE1.340e-2761.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLU0_9PHAE3.910e-2764.10Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JTI6_9PHAE6.560e-2763.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE6.570e-2763.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE6.580e-2763.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE6.590e-2763.75Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JBD1_9PHAE1.200e-2663.75Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JXF7_9PHAE7.810e-2661.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KSH9_9PHAE7.810e-2662.82Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1051contigP-littoralis_Contig1051:32044..33127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4081.Solyc03g063940.1.1
PFAMsRetrotran_gag_2
Model size319
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.49e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37VVP@33090|Viridiplantae,3GJYB@35493|Streptophyta
Descriptiongag-polypeptide of LTR copia-type
Cds size318
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789387.4236665-CDS-P-littoralis_Contig1051:32043..321211680789387.4236665-CDS-P-littoralis_Contig1051:32043..32121Pylaiella littoralis U1_48CDSP-littoralis_Contig1051 32044..32121 -
1680789387.435369-CDS-P-littoralis_Contig1051:32887..331271680789387.435369-CDS-P-littoralis_Contig1051:32887..33127Pylaiella littoralis U1_48CDSP-littoralis_Contig1051 32888..33127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1051.4.1prot_P-littoralis_Contig1051.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1051 32044..33127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1051.4.1

>prot_P-littoralis_Contig1051.4.1 ID=prot_P-littoralis_Contig1051.4.1|Name=mRNA_P-littoralis_Contig1051.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
AVKIVHTDNGGEFDGRFEEVCRELCMKQEKPPPHSPQFNGIAERALGLIK
DAARAGLIQAMVIFSDAPNFPSLWAEAMAWRSWRRRLIRTSVPSSRSERP
SVPSWS
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mRNA from alignment at P-littoralis_Contig1051:32044..33127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1051.4.1 ID=mRNA_P-littoralis_Contig1051.4.1|Name=mRNA_P-littoralis_Contig1051.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1084bp|location=Sequence derived from alignment at P-littoralis_Contig1051:32044..33127- (Pylaiella littoralis U1_48)
GCGGTCAAAATTGTGCACACCGACAACGGAGGGGAGTTTGATGGAAGATT
CGAGGAAGTGTGCCGTGAGCTCTGCATGAAGCAAGAAAAACCGCCCCCCC
ACAGCCCACAGTTTAACGGTATAGCGGAGAGAGCTCTGGGATTGATCAAG
GACGCAGCTCGTGCAGGCCTCATCCAAGCGATGGTTATTTTCTCAGATGC
TCCAAACTTTCCCTCTTTGTGGGCAGAAGCCATGGCGTGGGCGTGCCACG
CCTACAACTGCACCGCTACGACTGCTAACTCCGGCCGAAAATCCCCCTAC
GAAATGTGGAACGGCCACATCCCCCCGGTCGAATCGACGTACCCCTTCTT
GAAACCTGCTGTCTGCAAGGATGAACGGAAGGACAAGTCCGGTCCGAAGG
GGCAAAAATGCTGGTACCTCGGACCGGCGCTTGACCACAACCGCGACTGC
GTGCGCATGCTCACTGAACAGCACACTATAATAATCACCCGCAACTTTAC
CTGGCGTTCCGTGCCCTCTACCCCCCCCCGCTTGCCCGAGATGCTGCCGC
CCCCAGATGACGGGGTCCAGTCCTGGGATGACGAGGACGAGGTCAATGGG
CCACGCCGAGAAGGAGGGGGGGGGGAGGGAGAGCCTGAGGGCTCCATTCT
CGACGCGGTGGAAATGGTCCCTGGGCCGACGGCGGCGGCGGTGCCGGCGG
CGGCGCCCCTTCACGGGGGCAGGGAGGGCGCGGACAGCTACTCCCAAAGC
GGGGGGAGCGCAAACAGCGACCCCCCAGGTGGAGAGGGCGCCACTTCCTC
CAGCGGGGAGGGCGCGGACGGGGCCTCCTCCACAAGCGGCACGGCAAGCG
CGGACAGCGAAGCCGGCCGCAACAGCAGTAGCGCCAGCGCATTTGGCAGG
CGAGCCTCGCAAGTGCTTCGAGAGCTGGGCGGTAGCAACAGAAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCCCTTGCGACGATCCGGAGATGGCCGACC
TCCTAGCGGAGCTGGAGGAGAAGACTAATACGCACATCCGTTCCTTCCTC
GAGGAGCGAGCGGCCATCCGTTCCCTCATGGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1051:32044..33127-

>mRNA_P-littoralis_Contig1051.4.1 ID=mRNA_P-littoralis_Contig1051.4.1|Name=mRNA_P-littoralis_Contig1051.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig1051:32044..33127- (Pylaiella littoralis U1_48)
GCGGTCAAAATTGTGCACACCGACAACGGAGGGGAGTTTGATGGAAGATT
CGAGGAAGTGTGCCGTGAGCTCTGCATGAAGCAAGAAAAACCGCCCCCCC
ACAGCCCACAGTTTAACGGTATAGCGGAGAGAGCTCTGGGATTGATCAAG
GACGCAGCTCGTGCAGGCCTCATCCAAGCGATGGTTATTTTCTCAGATGC
TCCAAACTTTCCCTCTTTGTGGGCAGAAGCCATGGCGTGGCGGAGCTGGA
GGAGAAGACTAATACGCACATCCGTTCCTTCCTCGAGGAGCGAGCGGCCA
TCCGTTCCCTCATGGAGC
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