mRNA_P-littoralis_Contig1044.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1044.4.1
Unique NamemRNA_P-littoralis_Contig1044.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1044.4.1 vs. uniprot
Match: D8LR96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR96_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 4.530e-102
Identity = 149/195 (76.41%), Postives = 165/195 (84.62%), Query Frame = 1 
Query:   13 ALVALTLVTGALAKESRSLASGVWGAWKSERVKSKYFSELMADGDVVELLSHGPFTISASCGTMEGYPAVRLLMTVDADADADEWVYGFPDYLPQDYYNSCVGPTAAGTTSDTCIVWST--GSGKSDISGGYTSLSGYYVGFGGDATHGISKAYLADDQNRIYHNGYTAEDVAAFPTDCAISGELTYNRASGDDP 591
            ALVALTL  G LA+ESRSLASGVWGAWKSERVKSKYFSEL+ADGD VELL+HGPFTISA+CGT+ G   VRLL+TV AD+DADEWVYG+PD+LPQDYYNSCVG TAAGT SDTC+VW T  GSG  D +G YTSLSGYYV FGG +T G +K  L++ Q   Y NG+TAEDVAAFP DCAISGELTYNRASGDDP
Sbjct:    9 ALVALTLAAGGLAEESRSLASGVWGAWKSERVKSKYFSELLADGDTVELLTHGPFTISAACGTLGGEAEVRLLLTVTADSDADEWVYGYPDFLPQDYYNSCVGTTAAGTVSDTCVVWGTVSGSGFPDDAGAYTSLSGYYVSFGGPSTIGFNKEALSNVQYLTYANGFTAEDVAAFPNDCAISGELTYNRASGDDP 203
[Close]
BLAST of mRNA_P-littoralis_Contig1044.4.1 vs. uniprot
Match: A0A6H5KDL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL7_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 4.800e-72
Identity = 106/153 (69.28%), Postives = 126/153 (82.35%), Query Frame = 1 
Query:  118 YFSELMADGDVVELLSHGPFTISASCGTMEGYPAVRLLMTVDADADADEWVYGFPDYLPQDYYNSCVGPTAAGTTSDTCIVWST--GSGKSDISGGYTSLSGYYVGFGGDATHGISKAYLADDQNRIYHNGYTAEDVAAFPTDCAISGELTYN 570
            YFSEL+ADGD VELL++GPFTISA+CGT+ G   VRLL+TV AD+DADEWVYG+PD+LPQDYYNSCVG TAAGT SDTCIVW T  G+G  + +G YTSLSGYYV FGG +T G +K  ++++    Y NG+TAE+VAAFP DCAISGELTYN
Sbjct:    2 YFSELLADGDTVELLTNGPFTISAACGTLGGEAEVRLLLTVTADSDADEWVYGYPDFLPQDYYNSCVGTTAAGTVSDTCIVWGTVSGNGTPEDAGAYTSLSGYYVSFGGPSTIGFNKEAMSNEAYLTYSNGFTAEEVAAFPNDCAISGELTYN 154
[Close]
BLAST of mRNA_P-littoralis_Contig1044.4.1 vs. uniprot
Match: A0A6H5KAA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA8_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 2.390e-47
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:  259 DEWVYGFPDYLPQDYYNSCVGPTAAGTTSDTCIVWST--GSGKSDISGGYTSLSGYYVGFGGDATHGISKAYLADDQNRIYHNGYTAEDVAAFPTDCAISGELTYNRASGDD 588
            DEWVYG+PD+LPQDYYNSCVG TAAGT S T I+W T  GSG  + +G YTSLSGYYV FGG +T G +K  L+++    Y NG+TAE+VAAFP DCAISGELTYNRASGDD
Sbjct:   38 DEWVYGYPDFLPQDYYNSCVGTTAAGTVSGTGIIWGTVSGSGTPEDAGAYTSLSGYYVSFGGPSTIGFNKEALSNEACLTYANGFTAEEVAAFPNDCAISGELTYNRASGDD 149
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1044.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR96_ECTSI4.530e-10276.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDL7_9PHAE4.800e-7269.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAA8_9PHAE2.390e-4768.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1044contigP-littoralis_Contig1044:15350..20566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size594
Hectar predicted targeting categorysignal peptide
Exons4
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789380.315924-CDS-P-littoralis_Contig1044:15349..154601680789380.315924-CDS-P-littoralis_Contig1044:15349..15460Pylaiella littoralis U1_48CDSP-littoralis_Contig1044 15350..15460 +
1680789380.3278852-CDS-P-littoralis_Contig1044:17935..180431680789380.3278852-CDS-P-littoralis_Contig1044:17935..18043Pylaiella littoralis U1_48CDSP-littoralis_Contig1044 17936..18043 +
1680789380.3363438-CDS-P-littoralis_Contig1044:19369..195661680789380.3363438-CDS-P-littoralis_Contig1044:19369..19566Pylaiella littoralis U1_48CDSP-littoralis_Contig1044 19370..19566 +
1680789380.3462522-CDS-P-littoralis_Contig1044:20388..205661680789380.3462522-CDS-P-littoralis_Contig1044:20388..20566Pylaiella littoralis U1_48CDSP-littoralis_Contig1044 20389..20566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1044.4.1prot_P-littoralis_Contig1044.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1044 15350..20566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1044.4.1

>prot_P-littoralis_Contig1044.4.1 ID=prot_P-littoralis_Contig1044.4.1|Name=mRNA_P-littoralis_Contig1044.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=198bp
MVTRALVALTLVTGALAKESRSLASGVWGAWKSERVKSKYFSELMADGDV
VELLSHGPFTISASCGTMEGYPAVRLLMTVDADADADEWVYGFPDYLPQD
YYNSCVGPTAAGTTSDTCIVWSTGSGKSDISGGYTSLSGYYVGFGGDATH
GISKAYLADDQNRIYHNGYTAEDVAAFPTDCAISGELTYNRASGDDP*
back to top

mRNA from alignment at P-littoralis_Contig1044:15350..20566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1044.4.1 ID=mRNA_P-littoralis_Contig1044.4.1|Name=mRNA_P-littoralis_Contig1044.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5217bp|location=Sequence derived from alignment at P-littoralis_Contig1044:15350..20566+ (Pylaiella littoralis U1_48)
ATGGTGACTCGCGCCCTTGTGGCGCTCACGCTTGTGACCGGTGCACTTGC
TAAGGAGTCAAGGTCTCTCGCGTCTGGCGTGTGGGGCGCTTGGAAGTCCG
AGAGGGTGAAAGTGAGTTCGTTCGCGCCCTTGGCGGAATTGGTCTCAAGA
GAGAACGATCACGAAGCAAGCGTTGCTTCGGAGATGGACGACCCACCGTA
GTAAGGACAAGTAGTGCGTAGAAGAGTGTCTCGAGGTGATCCATGTTCCG
TTCATCGTGCTTGCATTTCCTGCGCCAAGCCTAGATTGGCACAGTAGTAA
CGTGCACGAATATATACTTTGTTTCCTCCTCGAAGCTCAAACCCATCCAT
CATTCGTCGGCTTCTATCCCCCTGTGAAAAATTATGGAATTTTTTTTACA
AAAAAAGCTATACAAAAAGCAAGTAAACGCGTCGCCAAAAAATGGCGACG
CGTTCACTTGCTTTACTCCGGAGTAGTATGCATTTGTGAATTGATCGGTT
AGCGCGGTTAAAGTTTACCTTTAATATGTGACGAACAATAAAATGGCGAC
CCAAAATGGCGACATTTGGCGACCTGGGGTAAGAGGGTAAACAGTTGTGA
GGATCTCAGGTGCGCGTAGGTCAACTCGGGTCATCATAAAACGGCGAAGT
AGGAAAAAGGAATGGATGTAGGGTTGTATCATTAGAGAAAACGGACGGGG
CAGCACCAAGAACGTGAGCCCCATGCACGACGCTAAGGACGCTGAGGGAT
TGAACCTCTGTTGTGAGTGTACGAAAGGCAAGAAAAGGCACCCGTTGGGT
GCAAGCAGTACTTCTTTTACTCAAACCGCTCGTTTTCTCTGGTCATCAAA
TCGAGCGCAGCCCTTTCTCGTGGTTCACCATTCAAGTGAAGCTTTTCATC
TTCGAAACAAAACTGCTGTACGAGTATCTATCTGCAGAACCTCGTCTGGA
GAGAGGCGGACACATTACAGTATGCGTTTCCAAGAATTTACTTCACGCAA
AAAGTTCAGCAGCAGTCTGTACACAGAGTATGTTGTATTTTGCTTTTTGT
ATTTTGCTCCGCAGGTCACCAGCACCACATCATACCGTACAGCACAGAAG
TCGACCGGAACAAGAGGGGGGGAACTCATTGCAGAGAGAAAGGGAAAAAG
GGACATCCCCGTCAGTGAGACATCCTCGTCCTCCTCCTCCACGGTCAAAG
ACCAACAGCTCTGTCTCTTGTCAGGCAGCGGGTTTATAAAGCCAAAATTC
GAGGAAAACGTGTAACTGTAACATGTTGCCCCGTTCTAATAACCAGCCTC
ACAAACCAAGCCCATGCTGGTGTTGTTGCGTCCTCATTGTACGAGAGGAG
AGAGTGGAGTCCCTCTGGCGGGTCAGGCCGTACTCATCCACGAGACCTCT
TGCAGACTACTGCTGTAGGTCATCTACATGGAAAACAAATTATTTTTCGG
TACTCAGTACGAAGTATCATAGCATACGTATAAAATGCTTCGAAGTACGA
CACGAACACCAAGCACAGGCATGTATGTGCGTTGGGATTCGATTCCGTTC
CCGCCACAGGTCTGATGGTGTATGTTGTACCACTGATGTAGGCAGCGGTT
TCTCAGGAGGTTCGCGGGTCCGCATCTACCCCCCCCCCCCTCAAAGCCGC
AAAGCGCCACAACTCACAGCATTGCAATGATCCGTGGGCCTATACCTTCC
GCTTGCCATCTACTTGGAAGTATTACCCCAGATTTTACCGTTAATTACCG
CCAGCGAGCTTCTCAATCTCTCCGCTATTTTGGCGGAATCCGGGGACATA
AATAACCATCCCCAGTCTCCACATATCTGAAAAATCAAGTGATAAACCTC
ATAAATCAAGAAAGTCGACCTCCAAACGCCTCTTCCTCGTTCTCCTCCTC
CACCCGGTGATGTTTGCACTCGTGCAGTGCCCCTAACCGTTACCTTAACC
TAACCTACTTCAGTTGTAACTGTAGCTTCAAAGAAGAGGATACGGGCCGT
CAAAAATGGAGGGCCAAGTGAAACGCTGTCTGTGCTGTTTGCTCACCACC
ACTCCTCCATCTCAGGAGTCACTGCGTGCGCCTCTCAGTCATCTCATCCA
CCATTCATTGCCAGTCTTCCTGTTATCATTTTGGCTTTGCTTTGTCCTCT
CGACTTTGGTTGTTGCTACTGCTGTATGATAGTAGATTTACGGGCAGACG
AAATTTCTTTGAAAATTTTCGCGTGAAAATACGAGAAACAAAGAGCAGCA
GCATCGGCAGCCCATGGAATATTGCTGAGTTTGAGGTTGGCGGACACGTC
AACTTTACATCAAAACCAAACCGTCTTCGCAACGGCCACAGCGAAACCTT
CTCCATGGCCGACCAAAACCCCACCGTCTCAAAATTTTTGTGAAATGCCG
AGAACTTGTCCCTTGTCTTCTAAATTAAATTCTATTTTGTCCCCACTCCG
CCCTCCCTTTCCGTGCACGGCTGTCGTCTGTTCCGCGTTGTCTTGGCGTC
TCTGGCACAAAACAAAACGAACGCCATGCCACACGGGACAACTTCTACTT
GATTGACCGGTGTGAACCTCTGCAAACAACTCACAGTCCAAGTACTTCTC
CGAGCTCATGGCGGACGGCGACGTCGTGGAGCTTCTTTCCCACGGGCCTT
TCACGATCAGCGCGAGCTGCGGCACCATGGAAGGCTATCCCGCCGTGAGT
TGTTGTCTCTACCGTTGATTTCGGTGAGGTTACCGATGTTTTTGCTGTTG
TTGTGCTTCACTTGGCACTGCTGTGTGTTCGTCCCATTTATTCTGGTGAA
GTGGGGGCACCAGCCGGGGTCACACACGAGTTTTTTGTATTTTGCTTCTA
TTGCCCACACCTGTACTCTCCTGTGGTACTGGCCTTGGGATTTTAATGCG
AGTCGGAATCAGCAATCCCTTCGCTCTGTTTACTCACGAATGAATCGCTT
TCCACTGCAAATACGAAAGAAAATGCTCTCAGAGAGAATCGGACCTGCAA
CCTTTCTGCTATGTAGAAGGTTCACGAGGCGACCATGGGCTGCTGATGCT
GCTGCTGCTGTGTCAAACGGCTCTTTACATCTCCCTGCACTTCCTAGAAT
CCTTACTGATCCTGCAAGGGTACAGACGACTTTTGGTCACAAGCTGTCGA
AGCGACACAAACAACGCACCAGGGCGTGTGGCCACAGCAGTAAAACCGTC
ACGCACGCACCCTGGCTGATTTTCGCAAGGAAGCTTTGTTTCTCCCTGCG
CGCAGAGAATGGCACAGGCGCTCTCAATCATGCTGTTGACCCAGGCGTAG
GGTAGAGCGGCCGTGACTGGGCGTCTTGATGTTGTGTCACGTACTTAGGT
GAGAGACGGGGCGCATGGGACGTCCTCTCTCGGGCCAGACACACCTTCAT
GCAACCTGACGACCGGACGATAATTTCGGTATCTCCTCGCACGTGTGCAA
TCCACCCAGATCTCCGGAGACTACCCCGTCATAAGTTGCCGCAAGAGTTA
TTCAACCAATCAGCCGATCGACACGAATTCCTTGGCACGATGTATGTTAC
GGGGTAGAAGCTGGCCGATCCCTTTCCCCTCCCACACCATGGCATGTGGG
TCATCCTGAAGCATGTCAGCGACGACGTGCCAAGGCACCGGTAGATTGTC
ATAAGCTGGCCTTAAGCGTCAGCGGAGGTATCGTAAAATAACGGGACAAA
CGCACCGCTCCCTTCTCCCCCCCCCCTCCGTTGTTAAAAGGAATTCGAGA
AGTCATTTTCTTACAACGGTGAAGGTGCACAATCGCCGAAACACGGTACT
TCAACAAACAGTGCGCTTCGAAACTTCGAAGTACGCACCTATAGGTATGT
GCAAGAATTCTGTCAAAATATAACAGCGATAGAAAACTTCAGCAGTACTT
CGAAAGTTCGAAGTGCTTCGCATCTGGTACATGTATAAATAGTTTGCATA
AATAAAACAGCACTACCTTTACCACTCAATGAAAATAAATTTCGTATCAT
TTCGTGCACTCATCGTGCAGGTGAGGCTGCTCATGACTGTGGACGCGGAC
GCCGACGCCGACGAGTGGGTGTACGGGTTCCCTGACTACTTGCCGCAGGA
CTACTACAACTCTTGCGTGGGCCCTACCGCTGCCGGAACCACGAGCGACA
CCTGCATCGTGTGGTCGACGGGCTCGGGCAAGAGCGACATCTCGGGCGGC
TACACCTCTCTCTCCGGGTAAAAGAGGATAAGATGCAGGCTTCGTTTTCT
TCAAACCCAAGGGAATTGCTTGTCCTTGCCGCCGCTATTGCTGCTCCTGC
TGCTGCTGTTGAATGGGGTGTGGCGGTTGTCGTCCTGGTTAGGGCAATGT
CGCTGCTGCTATGATAGTGCTGTACCGTGATACGCTGCAATTCTGCGAGT
GATGGCGTGATGGTGCCTTTACTGCAGCGACATGGGCATAGTAGCAAGCT
GTTTCAGAAGTAAGTCTGGATGGATAGGTAGTGGATGCATGACGGATGAA
CGAGAGACAGCTCTTCCTGCTGCTGTGTGGAAGTGGTGTGGTACACAGTC
ATGCTCCAACACCCAATCAACACCTACACATCAAACCAACTCAGTAGGTC
GGTGCGGTTTCTTTCATATATCCTCCGCGTGCTACGTTACGTCCCCCAAC
TCTAGCAACCAACTTTTTTACGCAGCTCTGTTTCTCTTGGGCATATGTAT
GTACGTACATGGACTTTTCTTCATGACGAAGGAAAGTCACACAACAAGTT
ATTACTTATTGCTTAACCAACTAGGTATGATTGATGATGTCAAAATTGAC
CAATCATCACCAACAACAAACAGCACCATCATCCACGGTCAGATTGAAAC
ATGTTGACCCTTCTGGAAAAAAAGTGAACCCGCCGTAGATGGCACGTCAT
GTTGACCAGGGATTTCTGGCCAATCTGAAAAAAATAAAAAATCTCCTTTC
GAAAAATTGACCAATCAGAAAACTGCGGGCACCTTTTCTCTCTCTCTCTC
CTACTCGTACAAAAACAAACTCACATGCAATATTCACAGGTACTACGTCG
GTTTCGGAGGTGACGCCACCCACGGCATCAGCAAGGCGTACCTTGCCGAC
GACCAGAACCGGATCTACCACAACGGTTACACGGCCGAAGATGTGGCCGC
CTTCCCCACGGACTGCGCCATCTCTGGAGAGCTGACATACAACCGGGCGT
CCGGCGACGACCCGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1044:15350..20566+

>mRNA_P-littoralis_Contig1044.4.1 ID=mRNA_P-littoralis_Contig1044.4.1|Name=mRNA_P-littoralis_Contig1044.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig1044:15350..20566+ (Pylaiella littoralis U1_48)
ATGGTGACTCGCGCCCTTGTGGCGCTCACGCTTGTGACCGGTGCACTTGC
TAAGGAGTCAAGGTCTCTCGCGTCTGGCGTGTGGGGCGCTTGGAAGTCCG
AGAGGGTGAAATCCAAGTACTTCTCCGAGCTCATGGCGGACGGCGACGTC
GTGGAGCTTCTTTCCCACGGGCCTTTCACGATCAGCGCGAGCTGCGGCAC
CATGGAAGGCTATCCCGCCGTGAGGCTGCTCATGACTGTGGACGCGGACG
CCGACGCCGACGAGTGGGTGTACGGGTTCCCTGACTACTTGCCGCAGGAC
TACTACAACTCTTGCGTGGGCCCTACCGCTGCCGGAACCACGAGCGACAC
CTGCATCGTGTGGTCGACGGGCTCGGGCAAGAGCGACATCTCGGGCGGCT
ACACCTCTCTCTCCGGGTACTACGTCGGTTTCGGAGGTGACGCCACCCAC
GGCATCAGCAAGGCGTACCTTGCCGACGACCAGAACCGGATCTACCACAA
CGGTTACACGGCCGAAGATGTGGCCGCCTTCCCCACGGACTGCGCCATCT
CTGGAGAGCTGACATACAACCGGGCGTCCGGCGACGACCCGTGA
back to top