mRNA_P-littoralis_Contig211.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig211.38.1
Unique NamemRNA_P-littoralis_Contig211.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: D8LJ99_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.450e-14
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 MRSLSRCASFRK---EDPDVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFREEREEDGTAVVLLDPL 240
            +  + RC +  +   ED  V ++YL N++ HP+D+KYR +K  N+KF +EVWL  G+R  F+A+GFR+        +V LDPL
Sbjct:   29 LAEVQRCVALSRRQGEDSTVGVKYLRNVLNHPDDVKYRTLKISNKKFYTEVWLNSGMRGLFLALGFRKR----SGGIVGLDPL 107
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BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: A0A835YQA1_9STRA (PUB domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.670e-13
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   16 RCASF---RKEDPDVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFRE 195
            RC +      EDP  A++YL NI  HP + KYR +KK N +F +EVWL PG+R  F AIGFRE
Sbjct:   12 RCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFRE 74
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BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: A0A7S1VQI1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQI1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.470e-6
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   46 DVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFREE 198
            +  ++YL NI+ HP++ KYRKI+  N+KF +EVW     R  F+A GF+EE
Sbjct:  373 NTCLKYLTNILRHPSERKYRKIRTANKKFYAEVW-NTAARGLFLAAGFKEE 422
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BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: A0A0L0DKI2_THETB (UBX domain-containing protein 6 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DKI2_THETB)

HSP 1 Score: 52.0 bits (123), Expect = 1.290e-5
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   40 DPDVA--IRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFREE------REEDGTAVVLLD 234
            DP VA  ++Y++NI+ HP+D KYR+IK  N+ FS+ +    G    F AIGF E+      +++  T +VL D
Sbjct:  212 DPCVATMLKYMDNILAHPDDPKYRRIKTSNKVFSTRIAPVSGALAFFAAIGFVEQPPKPDDKDQSATYLVLED 284
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BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: A0A851LP38_CORCR (UBXN6 protein (Fragment) n=9 Tax=Aves TaxID=8782 RepID=A0A851LP38_CORCR)

HSP 1 Score: 50.4 bits (119), Expect = 4.470e-5
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = 1 
Query:    7 SLSRCASFRKEDPDVAI------RYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFREER-------EEDGTAVVLLDPLTDERRRLAE 267
            S+    +F K+   V +      +YL+NI LHP + KYRKIK  N+ F   +    G+ R F AIGF  +        ++D   V+L+   T+E   L E
Sbjct:  129 SIMEIHTFNKDREKVRVGVETMAKYLDNIYLHPEEEKYRKIKLQNKVFQERISCLEGIHRFFQAIGFETKTLPVPGQGKKDSNPVLLVVETTEEYYVLKE 228
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BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: UPI0004F09FB3 (UBX domain-containing protein 6 n=1 Tax=Merops nubicus TaxID=57421 RepID=UPI0004F09FB3)

HSP 1 Score: 49.7 bits (117), Expect = 8.230e-5
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   46 DVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGF 189
            D + RYL+NI LHP + KYRKIK  N+ F   +    GV R F ++GF
Sbjct:  118 DSSCRYLDNIYLHPEEEKYRKIKLQNKVFQERISCLEGVHRFFQSVGF 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LJ99_ECTSI5.450e-1440.96PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQA1_9STRA1.670e-1352.38PUB domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S1VQI1_9STRA1.470e-647.06Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A0L0DKI2_THETB1.290e-539.73UBX domain-containing protein 6 n=1 Tax=Thecamonas... [more]
A0A851LP38_CORCR4.470e-533.00UBXN6 protein (Fragment) n=9 Tax=Aves TaxID=8782 R... [more]
UPI0004F09FB38.230e-547.92UBX domain-containing protein 6 n=1 Tax=Merops nub... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig211contigP-littoralis_Contig211:98646..101989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog529818.AMSG_07976T0
PFAMsPUB,UBX
Model size288
Max annot lvl2759|Eukaryota
KEGG koko:K14011
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006508,GO:0006807,GO:0006810,GO:0006914,GO:0006950,GO:0006952,GO:0007034,GO:0007041,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016236,GO:0019538,GO:0019898,GO:0030163,GO:0031090,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0032509,GO:0032510,GO:0032991,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0050832,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0061919,GO:0071704,GO:0071985,GO:0097708,GO:0098542,GO:0098588,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons3
Evalue2.11e-06
EggNOG OGsKOG2699@1|root,KOG2699@2759|Eukaryota
Ec32 ortholog descriptionPUB domain
Ec32 orthologEc-01_007510.1
Descriptionendosome to lysosome transport via multivesicular body sorting pathway
Cds size288
COG categoryCO
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790032.2561-CDS-P-littoralis_Contig211:98645..987701680790032.2561-CDS-P-littoralis_Contig211:98645..98770Pylaiella littoralis U1_48CDSP-littoralis_Contig211 98646..98770 +
1680790032.2686584-CDS-P-littoralis_Contig211:101192..1012711680790032.2686584-CDS-P-littoralis_Contig211:101192..101271Pylaiella littoralis U1_48CDSP-littoralis_Contig211 101193..101271 +
1680790032.2779605-CDS-P-littoralis_Contig211:101905..1019891680790032.2779605-CDS-P-littoralis_Contig211:101905..101989Pylaiella littoralis U1_48CDSP-littoralis_Contig211 101906..101989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig211.38.1prot_P-littoralis_Contig211.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig211 98646..101989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig211.38.1

>prot_P-littoralis_Contig211.38.1 ID=prot_P-littoralis_Contig211.38.1|Name=mRNA_P-littoralis_Contig211.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MRSLSRCASFRKEDPDVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWL
QPGVRRTFIAIGFREEREEDGTAVVLLDPLTDERRRLAECSLEAS*
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mRNA from alignment at P-littoralis_Contig211:98646..101989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig211.38.1 ID=mRNA_P-littoralis_Contig211.38.1|Name=mRNA_P-littoralis_Contig211.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3344bp|location=Sequence derived from alignment at P-littoralis_Contig211:98646..101989+ (Pylaiella littoralis U1_48)
ATGCGCTCTCTCTCCCGCTGTGCTTCCTTCAGGAAGGAGGATCCCGATGT
CGCCATCCGATATTTGGAGAACATCATCCTCCACCCGAATGATCTCAAGT
ACCGAAAGATAAAGAAGGGCAACAGGTGTGCGAAGCTTACATGTAAAGTC
GCAAAGACAGTACAAGTATAGTATGCCTGTTGTCATACCACTTATTCGGG
ACGCCCCAGTTTACACCTCTCGGTGTAGATTTTGCGCACCAGTTGGCGTC
ATACACTAGGAAGTGGTGATGGTTTTAAACGAGGCGGACCAACATGGATA
TTTGCCTCGATGTGTACCTGCAGTTGCGTACCAGCAGCATTCACTTTTTT
CTATTAGGTCATTGCACTTCTTTGTACATACCAAAGGTGGAACCCGGTAC
AGCAGTACCCATGGGACAAAAAAAAAAAACACACACACACACATGTATCA
GGCTACATCTTATGCGTCAAAAACGTCATTATTCGTTTTGGACCGTTCGA
ATAATAACGTTTCCAACAGGCTCTGTTGAAGGACCCGATATTATGTGTCA
AACACCGAACAGCAGGTGCTTTTATTTTTTTTAACTTCCGAATAAAAAAA
GTCTCTCCTGTCCGGCTGGGGCGGTTTGATGGTAGACAACTTGACTTTCA
TATTGCACTGCTGTCACCGGTTCGCTCTTTCGTCCACCACTCTCGAACGA
ATGAAGCCACAGTAATGGTAAGGACATGCCTCGCGAGGTGCGTGTATGGT
CCTTCTTCTCCCGTGGTTGTATAAGACCGCGAGGTATAGATAGACTAGCG
AAAAAAGGTTGCAGGCATCACCGATGACGTGTGAAGAAACGAAAAAAAAT
CGATTCAGCTCACCAGCAGCAGGTGGAGGTGGTGATTTCTTCTTTTTTCC
ACTGGCCATCAATTCCTGCAATCCTTCTACGCCAGCCTATCGATGCCTCG
CTCCTTCAGAGGACCACCGGAGGAGAGAGACCATGTTCACAGCTCGCGAG
GCATGGCTTTACCATTGCTGTGGCTTCATTCGTTCGAGAGCAATCAACAA
TAAGCCAAACTGGTGTGGCGGCAAAAAAAACTGCTCCTGGTTGAAGAGTT
CAGAGGACAGCAGCAGCAGCAAGCATCAGCTAGCTGCCAGTTCTCGTCCG
ATCCGTTTTGGTTTTTGGTCCATGGCGGCAAAAAAAACTGCTCCTGGTTG
AAGAGTTCAGAGGACAGCAGCAGCAGCAAGCATCAGCTAGCTGCCAGTTC
TCGTCCGATCCGTTTTGGTTTTTGGTCCATGGCGGCAAAAAAAACTGCTC
CTGGTTGAAGAGTTCAGAGGACAGCAGCAGCAGCAAGCATCAGCTAGCTG
CCAGTTCTCGTCCGATCCGTTTTGGTTTTTGGTCCATCGCTCTCGAACGA
AAGAACCCACAGCAATACTAAAGCCATCGGCCGTGAGGTGTATGTATGGT
CCTTCTCCTGCGTCAGTCATCAGAGGCCGCGAGGAATGGATGGGCTACCA
AACCAAAGTTTTCAGGTCGTCTCATCATGCAAGGCTGACTGTAACTTGGG
TTGTTCAAATGCCTTGACCCAAAAAAAATAACAGGTTTTCGATAGCTGCA
GGCTATCAGAAAAAACACTTTTTCTGATCGTTTGGGGCTATCGGAAAAAT
TTATTCGAAAAGTCGCTGTCTAAAATGGCTGTTTCTGATCACATAAGATG
CTCCGTTTTGGGCCAATGTTCAAAACAGCCAAATAAAATAAAAATATATG
AACGGTTCTGACACATAAGATGTAGCCTCAGACCGTTTTTTACGGCTCTG
TTTTTTCTCCTGAGGTACCCCCCCCCCACAGAGAGCCCAAACGGTTTGAA
ACGCTACTTCTTGAGCACAACAGGAGACAGCACCAAGCAGAACTCGACCC
TTGGGACACTAATCGAGACTTAAAGTGTTGGACGGTACGCTCCAGTGTTC
TCAGGTTGGCCACAGGAAATTTGGTGGGTGTGGGCTTTGGCTGTGGCGAG
GTTTCGGCGGTGGCGTGGGTTGAGGTAGGAAAATCCCGGGAAAAAAAAAC
GCTGTCCGAGCCTGTTTTTTGGCCGGAAAAACAGGAGCAAAGTCTGTTTT
TTCGTTTCATCTGTTTTTCCAACTCTAACACACACCGCCGTCAAAATCTC
GCCACAGCCCGCACCCATTGCCACCAAACTTCCTGTGGCCGACTTGAGAA
CATTGGAGCACACGCTCCATCAGGTTTGATCGGCATCTGTGTCCCAGGGG
TCGAGTTCTGGTTGGTGCTGTCGCATGATGTGTCCGACAGGGCTGTTGAC
GGGTGGGGGGGGGTAGGGGGGTTCTCTTGTTGGATTTGAGTAGGGGGTCA
AAACGCCAGGCCAAAATAACGTTGACCGTAAAAGCAGCCGCATACACCCA
TTGGTTCGGCAGCGTGTTACATTTTACGGTTGAAGGTACTACACGACCCC
TATCACACCATCACCAGGACCAGCACCAGCACCTCACGGACCCCCTCGTT
GTACATTTTCACGGTATCATGTGATATCATACTGCGTGATATCCCAGGAA
GTTCTCTAGCGAAGTCTGGCTTCAACCGGGGGTTCGGAGAACTTTCATCG
CCATCGGCTTCCGAGAGGAACGCGAGGTGGGCGAAAGGATTATCTTGTGA
AGAATTCAATTGTATATTGAGATGACGCTGGTTCAGGCATATTTCAAAAG
TTGCGCCTGATAGTACATCGTTGTGGTCAGGCGTCGGGCGGTAGAAGGCG
AAGACCCAAAATGAGCACCTCTGTATAGCGTTGATAGGAGAGTGGAAGAG
ATCTGCAGCGACAAAGGAGTCAAAGTAGGTCTGCTGCTGGGGATCGGTGT
CGAAATGTCTTGCAAGCAACACAAAGGTTACGAGAGGTGGAAGGATGTAT
GCACTTCGGATATTTCCTTGTCCGTTGCCCCTACCTTCGATCCCCTCATT
ACTCGCTCTTACAAGTATTGGAATGGCACATCTATAATGTTCGACGTACA
GTATTGATTTACGGAAGGTACGGTGCGTGTGGTGTGGAAGGCATGATAAA
ATCATAGCAACTTCGCCGTGACGTAACACTCATTGTACGGATGGCCGTGC
CTAATATGTTGATTGTAGATGAGCGGGAGGTGGTTTTGCCGTCCTGGATG
GATTCGTCTACAATGTTTTTTCCAACGCGCCTTGTGTGCTTCGCGCACCT
CCGTCCGTCCGTCGCCCTCGCCTACATACGAACGCGGACGTCCACGTTTT
GTGGACCAAGGAGGATGGTACGGCGGTGGTGCTCTTGGACCCCTTGACGG
ACGAGCGCCGAAGATTAGCCGAGTGTTCTCTCGAGGCGAGTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig211:98646..101989+

>mRNA_P-littoralis_Contig211.38.1 ID=mRNA_P-littoralis_Contig211.38.1|Name=mRNA_P-littoralis_Contig211.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig211:98646..101989+ (Pylaiella littoralis U1_48)
ATGCGCTCTCTCTCCCGCTGTGCTTCCTTCAGGAAGGAGGATCCCGATGT
CGCCATCCGATATTTGGAGAACATCATCCTCCACCCGAATGATCTCAAGT
ACCGAAAGATAAAGAAGGGCAACAGGAAGTTCTCTAGCGAAGTCTGGCTT
CAACCGGGGGTTCGGAGAACTTTCATCGCCATCGGCTTCCGAGAGGAACG
CGAGGAGGATGGTACGGCGGTGGTGCTCTTGGACCCCTTGACGGACGAGC
GCCGAAGATTAGCCGAGTGTTCTCTCGAGGCGAGTTAA
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