mRNA_P-littoralis_Contig210.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig210.53.1
Unique NamemRNA_P-littoralis_Contig210.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: A0A6H5K2N3_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N3_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 5.320e-94
Identity = 136/256 (53.12%), Postives = 165/256 (64.45%), Query Frame = 1
Query:   16 NEKYASLGCFKDNKDDRILGYKMSDGHMTTDMCYAYCSGMAAPFMATQFGIECWCATEVTVEYKRHGEGAD-CSYTCGGNEDEKCGGYNALNLYSIEPVASTKGGVRRGDEVHAQLGYDQTAEYSSSRAVSRGRTEGALVPDIVKIIDVVGDDPRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKALYDLLPDGPSSHERPLYNDIQCGNGPANTAPDEARCPGLVEHGRAGCGQIGPMWDLTVLET 780
            +  Y  LGCF D K DR++G+K++D  + T+ CY YC G  AP MATQ+GIECWCATEV +EY+RHGE  + C Y CGG++ E CGGYNA +LY IE + + +                              R +GA+  DIVKIIDV GD+P GA WADSYSVG  CYM ++FDH IG+  V+TP+G M I+ LYD+L  GP S   PLYNDIQCGNGPAN A DE  CPGLV  G  GCGQIGP WDL+ LE 
Sbjct:   39 DRNYTHLGCFVDKKSDRVMGHKIADEEVDTEFCYDYCLGENAPLMATQWGIECWCATEVDLEYERHGEAEELCDYKCGGDKTENCGGYNAFDLYVIESLTTIE------------------------------RPDGAMNDDIVKIIDVPGDNPGGAGWADSYSVGSKCYMSTTFDHGIGEQLVDTPIGEMKIRDLYDMLEKGPGSAGHPLYNDIQCGNGPANDAADETNCPGLVMEGPEGCGQIGPKWDLSELEA 264          
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: D8LNN0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN0_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.130e-92
Identity = 136/251 (54.18%), Postives = 162/251 (64.54%), Query Frame = 1
Query:   25 YASLGCFKDNKDDRILGYKMSDGHMTTDMCYAYCSGMAAPFMATQFGIECWCATEVTVEYKRHGEGAD-CSYTCGGNEDEKCGGYNALNLYSIEPVASTKGGVRRGDEVHAQLGYDQTAEYSSSRAVSRGRTEGALVPDIVKIIDVVGDDPRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKALYDLLPDGPSSHERPLYNDIQCGNGPANTAPDEARCPGLVEHGRAGCGQIGPMWDLTVL 774
            Y  LGCF D K DR+LG K++D  + T+ CY YC    AP MATQ+GIECWCA EV ++Y+RHGE  + C Y CGG+  E CGGYNA +LY IE + +    +  G                     S GR +GA+  DIVKII+V G  P GA WADSYSVG  CYM ++FDH IG+  V+TP+G M I+ LYD+L  GP S  RPLYNDIQCGNGPAN A DE  CPGLV  G AGCGQIGP WDL+ L
Sbjct:   42 YTHLGCFVDKKSDRVLGNKLADEEVDTEFCYDYCEEQNAPLMATQWGIECWCANEVDLDYERHGEAGELCDYKCGGDNKEICGGYNAFDLYVIESLTTID--IDDGPSPTXXXXXXXXXXXXVQEEESDGRPDGAMNDDIVKIIEVPGATPGGAGWADSYSVGSKCYMSTTFDHGIGEEVVDTPIGEMKIRDLYDMLQAGPGSAGRPLYNDIQCGNGPANDAADETECPGLVTEGEAGCGQIGPKWDLSEL 290          
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: D7FZB0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB0_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 2.070e-90
Identity = 135/254 (53.15%), Postives = 161/254 (63.39%), Query Frame = 1
Query:   16 NEKYASLGCFKDNKDDRILGYKMSDGHMTTDMCYAYCSGMAAPFMATQFGIECWCATEVTVEYKRHGEGAD-CSYTCGGNEDEKCGGYNALNLYSIEPVASTKGGVRRGDEVHAQLGYDQTAEYSSSRAVSRGRTEGALVPDIVKIIDVVGDDPRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKALYDLLPDGPSSHERPLYNDIQCGNGPANTAPDEARCPGLVEHGRAGCGQIGPMWDLTVL 774
            N  Y  LGCF DN+ DR+LG+K+ D  + T+ CY YC    APFMATQ+GIECWCATEV +EY+RHGE  + C Y CGG+ +E CGGY A +LY IE   +                               G  EGA+  DIVKII+V G +P GA WADSYSVG  CYM ++FDH IG+  V+TP+G + I+ LYD+L  GP S  RPLYNDIQCGNGPAN A DE  CPGLV  G  GCGQIGP WDL+ L
Sbjct:   44 NRDYTHLGCFVDNQSDRVLGHKLVDEEVDTEFCYDYCLEKNAPFMATQWGIECWCATEVDLEYERHGEAEELCDYKCGGDNNEICGGYYAFDLYEIESFTTID-----------------------------GPPEGAMNDDIVKIIEVPGANPGGAGWADSYSVGSKCYMSTTFDHGIGEELVDTPIGEVKIRDLYDMLEAGPGSVGRPLYNDIQCGNGPANDAADETECPGLVMEGPEGCGQIGPKWDLSEL 268          
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: D8LTU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU7_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.220e-49
Identity = 84/127 (66.14%), Postives = 97/127 (76.38%), Query Frame = 1
Query:  403 SRGRTEGALVPDIVKIIDVVGDDPRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKALYDLLPDGPSSHERPLYNDIQCGNGPANTAP--DEARCPGLVEHGRAGCGQIGPMWDLTVLE 777
            S    EGA   DIV+II+V G DP GA WADSYSVGG CYMQ++FDHDIG+V+V+TP G M I+ L++LL  GP S  RPLYNDIQCGNGP N+    DE  CPGLVE+GR GCGQIGPMWDL+ LE
Sbjct:  251 SAATPEGAFSEDIVQIIEVEGTDPGGAYWADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 377          
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: D8LTU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU8_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.040e-42
Identity = 80/122 (65.57%), Postives = 92/122 (75.41%), Query Frame = 1
Query:  418 EGALVPDIVKIIDVVGDDPRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKALYDLLPDGPSSHERPLYNDIQCGNGPANTAP--DEARCPGLVEHGRAGCGQIGPMWDLTVLE 777
            EGA   DIV+IIDV G  P GASWADSYSVG  CYMQ++FDH IG+V+V+TP G M I+ L+ LL  GP S  RPLYNDIQCGNGP N+    DE  CPGLVE+G  GCGQIGP+WDL+ LE
Sbjct:  765 EGAFSEDIVRIIDVEGVVPGGASWADSYSVGSKCYMQTTFDHGIGEVEVDTPQGTMKIEDLFFLLEPGPGSEGRPLYNDIQCGNGPVNSDNILDEIVCPGLVEYGIEGCGQIGPLWDLSELE 886          
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: A0A6H5JZU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU9_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.270e-41
Identity = 75/122 (61.48%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  418 EGALVPDIVKIIDVVGDDPRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKALYDLLPDGPSSHERPLYNDIQCGNGPANTAP--DEARCPGLVEHGRAGCGQIGPMWDLTVLE 777
            EGAL  DIV+IIDV G  P GASW+DSYSVG  CYMQ++FDHDIG+V V+ P G M I  L+DLL  GP S ++PLYNDIQC NGP N+    D+  CPGLV++G   CGQIGP+ DL+ LE
Sbjct:  146 EGALSEDIVRIIDVEGVVPGGASWSDSYSVGSKCYMQTTFDHDIGEVVVDPPQGPMKIGELFDLLELGPGSQDQPLYNDIQCENGPTNSHQILDKILCPGLVQYGIKDCGQIGPLRDLSELE 267          
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: B7GED4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GED4_PHATC)

HSP 1 Score: 144 bits (363), Expect = 2.370e-37
Identity = 68/117 (58.12%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  433 PDIVKIIDVVGD-DPRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKALYDLLPDGPSSHERPLYNDIQCGNGPANTAPDEARCPGLVEHGRAGCGQIGPMWDLTVLET 780
            PDIV +IDVVG   P G SWADSYS G  CY  ++FDHDI DV VETP G MTI+   +LL  GP    RP+YNDIQCGNGP N A DE  CPG  + G  GCGQIGP W+   +++
Sbjct:  203 PDIVAVIDVVGGVTPNGRSWADSYSFGNKCYCATTFDHDIADVLVETPQGWMTIRQACELLGPGPGIEGRPVYNDIQCGNGPPNNAGDEHVCPGRTDLGPEGCGQIGPRWNFDAIKS 319          
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: D8LRJ2_ECTSI (Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ2_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.250e-34
Identity = 57/97 (58.76%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   16 NEKYASLGCFKDNKDDRILGYKMSDGHMTTDMCYAYCSGMAAPFMATQFGIECWCATEVTVEYKRHGEGAD-CSYTCGGNEDEKCGGYNALNLYSIE 303
            N  Y  LGCF DN+ DR+LGYK+ D  + T++CY YC    APFMATQ+GIECWCATE  +EY+RHGE  + C Y CGG+ +E CGGY A +LY IE
Sbjct:   74 NRDYTHLGCFVDNRSDRVLGYKLVDEEVDTELCYDYCLEQNAPFMATQWGIECWCATEPDLEYERHGEAEELCDYKCGGDNNEICGGYLAFDLYEIE 170          
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: B7G9L2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9L2_PHATC)

HSP 1 Score: 139 bits (349), Expect = 5.580e-34
Identity = 64/118 (54.24%), Postives = 77/118 (65.25%), Query Frame = 1
Query:  433 PDIVKIIDVVGD-DPRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKALYDLLPDGPSSHERPLYNDIQCGNGPANTAPDEARCPGLVEHGRAGCGQIGPMWDLTVLETY 783
            PDIV ++DVVG   P G SWADSYSV   CY  ++FDH + DV VETP G MT +   +LL  GP    RP+YNDIQCGNGP N A DE  CPG  + G  GCGQIGP W+   + ++
Sbjct:  163 PDIVAVVDVVGGVTPNGRSWADSYSVNDKCYCATTFDHSVADVIVETPRGRMTTRQACELLGPGPGIEGRPVYNDIQCGNGPPNNAGDEHVCPGRTDIGPEGCGQIGPRWNFDAVGSF 280          
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Match: A0A7S1UW11_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UW11_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.040e-32
Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  442 VKIIDVVGDD-PRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKALYDLLPDGPS-SHERPLYNDIQCGNGPANTAPDEARCPGLVEHGRAGCGQIGPMWDLTVLET 780
            V +ID+VG++ P G  WADSYSVGG C+  S++DH+IG    +TP G M+++++ + L  GP  + + P+YNDIQCGNGP N+A DE RCPG V+ G+ GCG IGP W+L +  T
Sbjct:    1 VVVIDIVGEENPGGLGWADSYSVGGDCFCISTYDHNIGTFMYDTPSGYMSVQSICEGLGPGPGRTDDTPIYNDIQCGNGPPNSAGDEQRCPGRVDIGKDGCGHIGPKWNLPMPPT 115          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig210.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2N3_9PHAE5.320e-9453.13WSC domain-containing protein n=2 Tax=Ectocarpus s... [more]
D8LNN0_ECTSI1.130e-9254.18WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FZB0_ECTSI2.070e-9053.15WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTU7_ECTSI1.220e-4966.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTU8_ECTSI1.040e-4265.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZU9_9PHAE1.270e-4161.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B7GED4_PHATC2.370e-3758.12Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
D8LRJ2_ECTSI2.250e-3458.76Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
B7G9L2_PHATC5.580e-3454.24Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1UW11_9STRA2.040e-3251.30Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig210contigP-littoralis_Contig210:306459..309318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LNN0
PFAMsWSC
Model size789
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.85e-93
EggNOG OGs2EPZM@1|root,2ST37@2759|Eukaryota
Cds size789
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790029.8441713-CDS-P-littoralis_Contig210:306458..3068321680790029.8441713-CDS-P-littoralis_Contig210:306458..306832Pylaiella littoralis U1_48CDSP-littoralis_Contig210 306459..306832 -
1680790029.8579793-CDS-P-littoralis_Contig210:307305..3074001680790029.8579793-CDS-P-littoralis_Contig210:307305..307400Pylaiella littoralis U1_48CDSP-littoralis_Contig210 307306..307400 -
1680790029.8683531-CDS-P-littoralis_Contig210:307812..3078771680790029.8683531-CDS-P-littoralis_Contig210:307812..307877Pylaiella littoralis U1_48CDSP-littoralis_Contig210 307813..307877 -
1680790029.8780487-CDS-P-littoralis_Contig210:308587..3087341680790029.8780487-CDS-P-littoralis_Contig210:308587..308734Pylaiella littoralis U1_48CDSP-littoralis_Contig210 308588..308734 -
1680790029.8881347-CDS-P-littoralis_Contig210:309210..3093181680790029.8881347-CDS-P-littoralis_Contig210:309210..309318Pylaiella littoralis U1_48CDSP-littoralis_Contig210 309211..309318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig210.53.1prot_P-littoralis_Contig210.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig210 306459..309318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig210.53.1

>prot_P-littoralis_Contig210.53.1 ID=prot_P-littoralis_Contig210.53.1|Name=mRNA_P-littoralis_Contig210.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=263bp
RPFSDNEKYASLGCFKDNKDDRILGYKMSDGHMTTDMCYAYCSGMAAPFM
ATQFGIECWCATEVTVEYKRHGEGADCSYTCGGNEDEKCGGYNALNLYSI
EPVASTKGGVRRGDEVHAQLGYDQTAEYSSSRAVSRGRTEGALVPDIVKI
IDVVGDDPRGASWADSYSVGGVCYMQSSFDHDIGDVKVETPLGAMTIKAL
YDLLPDGPSSHERPLYNDIQCGNGPANTAPDEARCPGLVEHGRAGCGQIG
PMWDLTVLETYD*
back to top

mRNA from alignment at P-littoralis_Contig210:306459..309318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig210.53.1 ID=mRNA_P-littoralis_Contig210.53.1|Name=mRNA_P-littoralis_Contig210.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2860bp|location=Sequence derived from alignment at P-littoralis_Contig210:306459..309318- (Pylaiella littoralis U1_48)
CGACCTTTCAGCGACAACGAAAAGTACGCCTCCCTTGGATGCTTCAAGGA CAACAAGGATGACCGCATCTTGGGGTACAAAATGTCGGACGGGCACATGA CCACCGACGTAAGCAAGCTCGCAGGTTGTTCTTGACCACAATCGACACAA CAGCCGCTGCCGCCGCCATCTGAGATTGTTTTAGGTTTTTGTTTTGTAGC GTGCCCGATCAAGTCACTCACGGCCCCCCCGCCGTTCCAGACGCGCTGCA CGCAGTTATTCATCAATCTCTTTATTTTCTTCGTAATTTATTTACGAAGT ACTCCGTATTTATTTTTACATTTCCCCCGGTTTTTGCGTGTTCATCATCT TCAACCAGCAGTCTTAGGTTTAGCCTTGGAATGCACGGCCGCACTTTAGT TTTTTTTTGTTCATCGAAAGGGAGATCGCCCGTCTGGCTCTTCCTATGAT ATCACCTTGTTGTCCATTTCGTTTCCGTCCCCACCTCTTGGCTTTGTGAG CTTATCACGCGACCACCCGCCCCCTGCAACCCCTCCCTGGAATATGCTGG TTCTCTGTGATTTGTTGCGTCGTGTCCTTTCTAGATGTGCTACGCGTACT GCTCCGGAATGGCCGCTCCCTTCATGGCTACTCAGTTCGGCATAGAATGC TGGTGCGCTACCGAAGTCACAGTCGAGTACAAACGCCACGGAGAGGGAGC GGATTGCAGCTACACCTGCGGAGGCAATGAGGTACGCACTAACATTATTT CATAGTCAGAAATTCTTGGAAATATATCGCAGGGCTTACGAGGCTTCGTA GGAACGCGTGTTGTAGGGATTACTCGCTCGTGCGGAAGAGACGTCGCCAT AAACTTGAACGCCGTTGGCAAAATATCTGGATGTTTAAGACCCATGGTTG GTGCCCCTTGGGCTACCGGTATCATAAATGTATGTAGTACTAAAAAGTTG TCGCCCGCCGCCCGTTGGTGTGTATACATTAACCTCCCCGACGAACACGC AGCACAGCTGGTATCATAGCGCCCAAAGTCAAAACAATGTTTGTTTGGTT TTGCTGTGCGACCTATGTCAGCTGTACAGTACTGAAATATCTGAAGCGGG AGAGGTGCATGTGAGAAAAGAGAATATAGTTTCATCATTTCTCGTCCTTA CTCGATGCTTCGGTTAAACTGTCTTGAGAGCGCGGGCCAAACCTGCCGCT CCTTTACCTTTACTCGTTTGCACCCCCAACGCACCACTTATTAAGTCAGT GCACTTCCTCGATGTCCACGCGCGTCGTTGGACGTATGGTATAATAATCG GTATTACGAAGGAAATCATTTGACCTTTGAACTGAATCGAATCAGCGCTT CCCCCCACATTACTCTGTCATACCAACCTGCGTTGCTGCCCCGTCCGTTC TCTCTCCCCTTGCCCCGCCGGTCTGATTTCACCGTACACAGGACGAGAAG TGCGGCGGCTACAACGCCCTGAACTTGTACAGTATCGAACCGGTCGCTTC TACAAAGTGAGTTTTGAACTTACCCGCTGCTTCTAGATATGTGATCAACT CTTTCATAGAAATTGACCCTCTTGAAAACAAAACCAGCGGTATAACTTCA GGACTCAATTGTCAGGAGCGGCTCCAAGTGCAGATAAGAGTTAAGAGGTG GAGCGATGCGTTCATGGTATTAGAGGTATACACGACCACGCACTCACTGC TGCTGCTATACAACCAAAGCAAAAAGTGTAAGTGTCGCTTTCCCCTCAAG CTTTTCTGTGCGATCAACGTAAACCCCGCGCACGAACGAGCGCGCAGGTG CGTCGCGGCGTCGCCCACCGCTCGTTGTTGTGTACATGAAAAATGTAGCG TCTATTTGTTCCTCAATCATATGGGCTTTGACCTGTCCTGCTGGGTTCCT TCAGTGTTCACGAGCGAGGGGTGGGGTGCGTCGCGGCGATGAGGTACATG CACAACTAGGATATGATCAAACCGCAGAGTACAGCAGTAGCAGGGCCGTC TCTCGGGGAAGAAGTCGCAGTCATAACACAACTCAAATCATTATGCGGGT GTATTATTGCGTCTCCTTAATGAAGTCCACACACACCGCTCTTACTTTAC GCGTGGAGGCGAGCTTGCTGCCCTGCTGAGAGTGCCGCACCGCTGTTTCC GTGGGTTGTTTGTTTCATGTGGGCGGAGGGAGCTCCTCCTTGTGCGCACG CGTATTTAGTGGTCATGCAGCAAGAGAGCTTTATTTCATTGATACGTACT TTCATTACTTGATTTTGAAAGGCCAAGAGAAGGGTCGTTTTGACATCCAG TGGATGACCTTTCTTTGCATTGTCCCTTTCCATTACAGCACGCATTTTTT CCCGGGATAATGCGGAAACACAGTACCTTGGCCTGAATGAAGAACAAACG ATGATCTGATTGATGTGTACCTTCCTCTTACGCGCTGCTGCTGCTGCTGT TGCTGCTGCCTCCCAACTCCTGCAAACGAAGTGGAGCGGAAGGCGCGCTC GTACCGGACATCGTAAAAATCATCGACGTCGTAGGTGACGACCCCCGTGG TGCAAGCTGGGCTGACAGCTACTCGGTTGGTGGCGTTTGCTACATGCAGA GCTCTTTCGATCATGACATTGGCGACGTCAAGGTGGAGACACCGCTGGGC GCAATGACCATCAAAGCACTCTACGACCTTCTACCGGACGGCCCTTCTTC TCACGAACGCCCTCTCTACAACGACATCCAGTGCGGAAACGGCCCGGCCA ACACCGCACCCGATGAGGCTCGCTGCCCAGGCCTGGTTGAGCACGGTCGG GCCGGCTGCGGTCAGATTGGTCCGATGTGGGACCTTACCGTGCTAGAGAC ATATGATTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig210:306459..309318-

>mRNA_P-littoralis_Contig210.53.1 ID=mRNA_P-littoralis_Contig210.53.1|Name=mRNA_P-littoralis_Contig210.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig210:306459..309318- (Pylaiella littoralis U1_48)
CGACCTTTCAGCGACAACGAAAAGTACGCCTCCCTTGGATGCTTCAAGGA
CAACAAGGATGACCGCATCTTGGGGTACAAAATGTCGGACGGGCACATGA
CCACCGACATGTGCTACGCGTACTGCTCCGGAATGGCCGCTCCCTTCATG
GCTACTCAGTTCGGCATAGAATGCTGGTGCGCTACCGAAGTCACAGTCGA
GTACAAACGCCACGGAGAGGGAGCGGATTGCAGCTACACCTGCGGAGGCA
ATGAGGACGAGAAGTGCGGCGGCTACAACGCCCTGAACTTGTACAGTATC
GAACCGGTCGCTTCTACAAAGGGTGGGGTGCGTCGCGGCGATGAGGTACA
TGCACAACTAGGATATGATCAAACCGCAGAGTACAGCAGTAGCAGGGCCG
TCTCTCGGGGAAGAACGGAAGGCGCGCTCGTACCGGACATCGTAAAAATC
ATCGACGTCGTAGGTGACGACCCCCGTGGTGCAAGCTGGGCTGACAGCTA
CTCGGTTGGTGGCGTTTGCTACATGCAGAGCTCTTTCGATCATGACATTG
GCGACGTCAAGGTGGAGACACCGCTGGGCGCAATGACCATCAAAGCACTC
TACGACCTTCTACCGGACGGCCCTTCTTCTCACGAACGCCCTCTCTACAA
CGACATCCAGTGCGGAAACGGCCCGGCCAACACCGCACCCGATGAGGCTC
GCTGCCCAGGCCTGGTTGAGCACGGTCGGGCCGGCTGCGGTCAGATTGGT
CCGATGTGGGACCTTACCGTGCTAGAGACATATGATTAA
back to top