mRNA_P-littoralis_Contig208.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig208.30.1
Unique NamemRNA_P-littoralis_Contig208.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig208.30.1 vs. uniprot
Match: D7G531_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G531_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.730e-19
Identity = 62/120 (51.67%), Postives = 70/120 (58.33%), Query Frame = 1 
Query:  349 GRNREVLERGRGSSAGDRPRSLHHLDRRQYAEERRNFPEEHAQFRERGQG-SSPQVHGMIGGERLTPLRGFEDVAPAVSQQXXXXXXXXXXXXXXXXXXPSSYPREHRTNSDGTLVHSYL 705
            GR+R+ LER  G  +GDRPRSLHHLD  Q AEERR F EE  Q RERG G S+ +VHGMIGGERLTPL GFE+   + S                    P SYPR  R  SDG +  S L
Sbjct:  479 GRDRDPLERAAGGWSGDRPRSLHHLDGGQLAEERRRFAEE--QVRERGPGGSTARVHGMIGGERLTPLSGFEESDASASHARRFYQEQQHQRQYH----PHSYPRMQRARSDGLVAESVL 592
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BLAST of mRNA_P-littoralis_Contig208.30.1 vs. uniprot
Match: A0A6H5KAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.350e-17
Identity = 58/119 (48.74%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:  349 GRNREVLERGRGSSAGDRPRSLHHLDRRQYAEERRNFPEEHAQFRERGQG-SSPQVHGMIGGERLTPLRGFEDVAPAVSQQXXXXXXXXXXXXXXXXXXPSSYPREHRTNSDGTLVHSY 702
            GR+ + LER  G  + DRPRSLHHLDR Q AEERR F E+  Q RERG G S+ +VHGMIGGERLTPL GFE++  + S                    P +YPR  R  SDG +  S+
Sbjct:  484 GRDGDPLERAAGGWSEDRPRSLHHLDRGQLAEERRRFAED--QVRERGPGGSTARVHGMIGGERLTPLSGFEELDASASHARRFYQEQQHQRQYH----PHAYPRMQRARSDGLVSSSH 596
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig208.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G531_ECTSI1.730e-1951.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAZ7_9PHAE2.350e-1748.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig208contigP-littoralis_Contig208:154793..156011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size723
Hectar predicted targeting categoryother localisation
Exons2
Cds size720
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790010.2754474-CDS-P-littoralis_Contig208:154792..1552631680790010.2754474-CDS-P-littoralis_Contig208:154792..155263Pylaiella littoralis U1_48CDSP-littoralis_Contig208 154793..155263 +
1680790010.2848065-CDS-P-littoralis_Contig208:155761..1560101680790010.2848065-CDS-P-littoralis_Contig208:155761..156010Pylaiella littoralis U1_48CDSP-littoralis_Contig208 155762..156010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig208.30.1prot_P-littoralis_Contig208.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig208 154793..156010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig208.30.1

>prot_P-littoralis_Contig208.30.1 ID=prot_P-littoralis_Contig208.30.1|Name=mRNA_P-littoralis_Contig208.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp
GGGGSGGSGGTSTSGRGMVQIGDDHQWEDARRGGHQTALVGRPGSSSGRS
SPFVDDSAWMQQQQQQQDPSNDRRRLHGGSGGGGGGGGVGAGDQHQHQHQ
HQHQHLLHLHSGMQNRGRNREVLERGRGSSAGDRPRSLHHLDRRQYAEER
RNFPEEHAQFRERGQGSSPQVHGMIGGERLTPLRGFEDVAPAVSQQRHHH
NLLRQHQQQLQQQQPSSYPREHRTNSDGTLVHSYLQSQPL
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mRNA from alignment at P-littoralis_Contig208:154793..156011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig208.30.1 ID=mRNA_P-littoralis_Contig208.30.1|Name=mRNA_P-littoralis_Contig208.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1219bp|location=Sequence derived from alignment at P-littoralis_Contig208:154793..156011+ (Pylaiella littoralis U1_48)
GGCGGCGGGGGAAGCGGCGGCAGTGGCGGCACCAGCACCAGCGGCCGCGG
GATGGTGCAGATTGGTGACGACCACCAGTGGGAGGACGCGCGGCGGGGAG
GACATCAGACGGCGTTGGTAGGGCGGCCGGGGAGCAGCAGCGGACGATCG
TCTCCTTTCGTGGACGACTCGGCTTGGATGCAGCAGCAGCAGCAGCAGCA
GGACCCCAGCAACGACCGCCGGAGGCTGCACGGCGGCAGCGGCGGCGGCG
GCGGCGGCGGCGGTGTGGGCGCGGGAGATCAGCATCAGCATCAGCACCAG
CACCAGCACCAGCACCTGCTTCATCTCCACAGCGGTATGCAAAACAGAGG
CCGGAACCGTGAAGTGCTGGAGCGCGGGAGAGGGTCTTCCGCGGGGGATA
GGCCACGGTCGCTGCATCACCTGGACCGTCGGCAGTACGCTGAAGAACGT
CGCAATTTCCCCGAAGAACATGTACGTTCCTTGACTTTCTCTTTTCTCTC
CTCCCCCCTCCCTTCCCATACCCTCTCTTCTGTCCGAAAAACGGAGCTGC
TTTCGTGGTGTGACTAGAATCACCCCGTCCTTCTCCTATTACTAGTGCTA
CTCCTTCTCGGAATGGGATGCACGTGTGTTCGATGGTCATATGATATGCA
CTCTCCTCCACGGAGTCGACTTGAGGTTGTACGCAGCAGTGCCATGCATT
GGGCGTTGGCAAGTGACACTGCTGATGACATGATCCATGGTATGATACAC
ATGTATTACTTGGGGCAAGCCACAGCAGTCGAGGCTTGAACTCCCCCCCA
CCCCATCCCCTCCTCCTGCTAGGCTTGCGGTGCCCCTTCTCGGGAAGGGG
TGCATATATGATACGATGTATTGTCGATGGTCGAATGATTTGAAGGCAAT
AATATACTATTCAGGTTTGAATCCCCCTCCCCCCCCCCCTCTCCCACTCC
CGCCCCAACACCCCAACAGGCGCAGTTTCGAGAGAGAGGCCAAGGTAGCT
CTCCGCAGGTGCACGGCATGATCGGTGGCGAACGCCTGACTCCGCTCCGC
GGTTTTGAGGACGTCGCTCCCGCGGTTTCTCAGCAGCGCCACCACCATAA
TCTCCTCCGTCAACACCAGCAGCAGCTGCAGCAGCAGCAGCCATCCTCTT
ACCCTCGGGAGCACCGAACGAACAGCGACGGCACGCTGGTCCACTCATAC
TTGCAATCGCAACCGCTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig208:154793..156011+

>mRNA_P-littoralis_Contig208.30.1 ID=mRNA_P-littoralis_Contig208.30.1|Name=mRNA_P-littoralis_Contig208.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig208:154793..156011+ (Pylaiella littoralis U1_48)
GGCGGCGGGGGAAGCGGCGGCAGTGGCGGCACCAGCACCAGCGGCCGCGG
GATGGTGCAGATTGGTGACGACCACCAGTGGGAGGACGCGCGGCGGGGAG
GACATCAGACGGCGTTGGTAGGGCGGCCGGGGAGCAGCAGCGGACGATCG
TCTCCTTTCGTGGACGACTCGGCTTGGATGCAGCAGCAGCAGCAGCAGCA
GGACCCCAGCAACGACCGCCGGAGGCTGCACGGCGGCAGCGGCGGCGGCG
GCGGCGGCGGCGGTGTGGGCGCGGGAGATCAGCATCAGCATCAGCACCAG
CACCAGCACCAGCACCTGCTTCATCTCCACAGCGGTATGCAAAACAGAGG
CCGGAACCGTGAAGTGCTGGAGCGCGGGAGAGGGTCTTCCGCGGGGGATA
GGCCACGGTCGCTGCATCACCTGGACCGTCGGCAGTACGCTGAAGAACGT
CGCAATTTCCCCGAAGAACATGCGCAGTTTCGAGAGAGAGGCCAAGGTAG
CTCTCCGCAGGTGCACGGCATGATCGGTGGCGAACGCCTGACTCCGCTCC
GCGGTTTTGAGGACGTCGCTCCCGCGGTTTCTCAGCAGCGCCACCACCAT
AATCTCCTCCGTCAACACCAGCAGCAGCTGCAGCAGCAGCAGCCATCCTC
TTACCCTCGGGAGCACCGAACGAACAGCGACGGCACGCTGGTCCACTCAT
ACTTGCAATCGCAACCGCTG
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