mRNA_P-littoralis_Contig200.101.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig200.101.1
Unique NamemRNA_P-littoralis_Contig200.101.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig200.101.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.610e-64
Identity = 116/191 (60.73%), Postives = 141/191 (73.82%), Query Frame = 3 
Query:   51 GVFSPQLTRLLGILEFFDCWQTTLQAAFEPVEWQKHFVTAQSWFDMRATILGFVSMSRYIFSDENLVKERSGKARRFLCPRMFSQDILEHRFAHIRAGMGTHKAPTGSQAAHAGLHGDTCRLSHGERRRNASKEGGQPFEIQQGATMRMSLPVNKIEREEAVRADTWLDADHVFETRSA*KACCVSCAVIC 623
            G   P LTRLL +L+FFD WQ+ L+  F   +W  HF+T  SW DMR+ ILGFV+MSRYIF+D +LV+E  G  RRFL PRMFSQDILEHRFAHIR GMGTHKAPT +QAA    HGDTCR+SHG +RRNAS+  G  FE+Q  A++R++LPVN  EREE VRA TW   DHVFE+R++   CCV+   +C
Sbjct:  716 GADCPPLTRLLEVLQFFDSWQSNLRHTFGG-KWAPHFITDVSWKDMRSCILGFVAMSRYIFADRDLVEEEGGVPRRFLYPRMFSQDILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVNASEREEVVRAATWDRDDHVFESRAS---CCVTDCHMC 901
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BLAST of mRNA_P-littoralis_Contig200.101.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 8.920e-57
Identity = 105/178 (58.99%), Postives = 123/178 (69.10%), Query Frame = 3 
Query:   51 GVFSPQLTRLLGILEFFDCWQTTLQAAFEPVEWQKHFVTAQSWFDMRATILGFVSMSRYIFSDENLVKERSGKARRFLCPRMFSQDILEHRFAHIRAGMGTHKAPTGSQAAHAGLHGDTCRLSHGERRRNASKEGGQPFEIQQGATMRMSLPVNKIEREEAVRADTWLDADHVFETRS 584
            G  SP L RLL ILEFFD WQ +L+A F P EW  HF+T  SW DMR TILGFV+M RY+F DE+LV   SG   RFL PRMFSQDILEHRFAHIR+G GTHK PT  QA  A   GDT R+ HG RRRN+S+  G  F+++    +R + P N  ER + VRA+T  DA HVFE+RS
Sbjct:  496 GADSPLLGRLLEILEFFDSWQVSLEAHFGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDEDLV---SGG--RFLYPRMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRS 668
[Close]
BLAST of mRNA_P-littoralis_Contig200.101.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.220e-38
Identity = 83/174 (47.70%), Postives = 104/174 (59.77%), Query Frame = 3 
Query:   60 SPQLTRLLGILEFFDCWQTTLQAAFEP------VEWQKHFVTAQSWFDMRATILGFVSMSRYIFSDENL--VKERSGKARRFLCPRMFSQDILEHRFAHIRAGMGTHKAPTGSQAAHAGLHGDTCRLSHGERRRNASKE-----GGQPFEIQQGATMRMSLPVNKIEREEAVRA 542
            S  + RLL ILEFFD WQ+TL+    P      + W+KHF+T QSWFD+R +ILGFVSM RY+F D     +   S   RRFL PR  SQDI EHRF+HIRA +GTH+ PT  +A      GD CR ++G+RRRNAS+      GG   E        + L V K+E  + VRA
Sbjct:   90 SAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRA 263
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFP1_9PHAE1.610e-6460.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE8.920e-5758.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE3.220e-3847.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:324156..325030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size656
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789984.2951007-UTR-P-littoralis_Contig200:324155..3242211680789984.2951007-UTR-P-littoralis_Contig200:324155..324221Pylaiella littoralis U1_48UTRP-littoralis_Contig200 324156..324221 -
1680789984.3281949-UTR-P-littoralis_Contig200:324845..3250301680789984.3281949-UTR-P-littoralis_Contig200:324845..325030Pylaiella littoralis U1_48UTRP-littoralis_Contig200 324846..325030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789984.3065133-CDS-P-littoralis_Contig200:324221..3245061680789984.3065133-CDS-P-littoralis_Contig200:324221..324506Pylaiella littoralis U1_48CDSP-littoralis_Contig200 324222..324506 -
1680789984.3159409-CDS-P-littoralis_Contig200:324725..3248451680789984.3159409-CDS-P-littoralis_Contig200:324725..324845Pylaiella littoralis U1_48CDSP-littoralis_Contig200 324726..324845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.101.1prot_P-littoralis_Contig200.101.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig200 324222..324845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig200.101.1

>prot_P-littoralis_Contig200.101.1 ID=prot_P-littoralis_Contig200.101.1|Name=mRNA_P-littoralis_Contig200.101.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MRATILGFVSMSRYIFSDENLVKERSGKARRFLCPRMFSQDILEHRFAHI
RAGMGTHKAPTGSQAAHAGLHGDTCRLSHGERRRNASKEGGQPFEIQQGA
TMRMSLPVNKIEREEAVRADTWLDADHVFETRSA*
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mRNA from alignment at P-littoralis_Contig200:324156..325030-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig200.101.1 ID=mRNA_P-littoralis_Contig200.101.1|Name=mRNA_P-littoralis_Contig200.101.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=875bp|location=Sequence derived from alignment at P-littoralis_Contig200:324156..325030- (Pylaiella littoralis U1_48)
ACTGCAGGGTTGCCCAGTGGTGGGCTGACAACGGGGACGAAGACCGCAAC
GGCGTGTTCAGCCCTCAGCTGACGAGGCTTTTGGGGATCCTAGAGTTCTT
CGACTGCTGGCAAACTACCCTCCAAGCAGCGTTCGAACCAGTGGAGTGGC
AAAAGCACTTCGTCACCGCCCAGTCGTGGTTTGATATGCGTGCTACCATT
CTTGGTTTCGTCTCAATGTCACGGTACATCTTTTCGGACGAGAATCTCGT
CAAGGAAAGGAGCGGGAAGGCGCGCCGCTTTCTATGTCCACGCATGTTCA
GCCAGGTGGCATATAGTCTTCCTTCAAAAAAATTACACGGCCTCACTGGT
CAATGTCTGTGGTTAACTATTTGATAGGTTGTTCATTTTTCCGAGTGTGC
GTATGTGCGTTTTTTTTTTTTATGGCAGGGGTACGTCATATGAGGCTGAT
GTCATGTCGGTCCGATTCAACTGATGTATCTCCGCACGTTCCATGCGCGC
GACTGTCCCTTGCACTTCACTCAGGACATTCTCGAACACAGGTTCGCGCA
CATCAGGGCTGGGATGGGGACGCACAAGGCTCCTACGGGGTCCCAGGCGG
CCCACGCTGGATTGCACGGAGATACTTGTCGGCTGTCACACGGTGAACGG
CGCCGCAACGCGTCAAAAGAGGGCGGACAGCCGTTCGAGATCCAACAGGG
CGCAACTATGCGCATGTCACTACCTGTAAACAAAATAGAGCGAGAAGAAG
CAGTGAGAGCCGACACGTGGCTCGATGCAGACCATGTGTTCGAGACGCGC
TCGGCATGAAAGGCCTGTTGTGTGTCGTGTGCGGTGATTTGCAAAAATAA
TGATCTGTAGCTTTGTGTTTTTGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig200:324156..325030-

>mRNA_P-littoralis_Contig200.101.1 ID=mRNA_P-littoralis_Contig200.101.1|Name=mRNA_P-littoralis_Contig200.101.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig200:324156..325030- (Pylaiella littoralis U1_48)
ATGCGTGCTACCATTCTTGGTTTCGTCTCAATGTCACGGTACATCTTTTC
GGACGAGAATCTCGTCAAGGAAAGGAGCGGGAAGGCGCGCCGCTTTCTAT
GTCCACGCATGTTCAGCCAGGACATTCTCGAACACAGGTTCGCGCACATC
AGGGCTGGGATGGGGACGCACAAGGCTCCTACGGGGTCCCAGGCGGCCCA
CGCTGGATTGCACGGAGATACTTGTCGGCTGTCACACGGTGAACGGCGCC
GCAACGCGTCAAAAGAGGGCGGACAGCCGTTCGAGATCCAACAGGGCGCA
ACTATGCGCATGTCACTACCTGTAAACAAAATAGAGCGAGAAGAAGCAGT
GAGAGCCGACACGTGGCTCGATGCAGACCATGTGTTCGAGACGCGCTCGG
CATGA
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