mRNA_P-littoralis_Contig200.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig200.2.1
Unique NamemRNA_P-littoralis_Contig200.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig200.2.1 vs. uniprot
Match: D7G0A2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A2_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 6.940e-75
Identity = 155/236 (65.68%), Postives = 180/236 (76.27%), Query Frame = 1 
Query:    1 MYFSQRFDEEIEVLRERYGDVDQDALIVKLLLEEFRFTTVEAIDLPTLKKRERDIGKVYLLGQSHFNQTPPPISVDMTSIKPKALEVVGDEQLSAVARETLPANTKTSKKAVELMGSTKVVTEKKALKRLGSEMTDDMRALQVKTERKEQREAGEXXXXXXXXXXXXXXXXXXXXXXGAGTHA--------GPRKISMVNMGIGPPGSFATTPMARRATRLLNEVPKFISEIGGGS 684
            M  ++RF EEIEVLR ++G+VDQD LIVKLL+EEF FTTVEA DL  LK R RD GKVYLLG+++F Q+P    VD +++KPKALE+VGDE+L+  ARE LPANT+TSKKAVELMGSTKVVTEKKALKRLGSEM+D MR LQ+KTERKE      XXXXXXXXXXXXXXXX        G  A         P K SM  M +  PGSFA++PMARRATRLL EVPKFI+++GGGS
Sbjct:    1 MVVTRRFAEEIEVLRAKHGEVDQDGLIVKLLMEEFSFTTVEATDLQALKTRPRDKGKVYLLGETNFMQSPLTERVDYSNLKPKALEMVGDEKLNTEAREALPANTRTSKKAVELMGSTKVVTEKKALKRLGSEMSDSMRVLQIKTERKEXXXXXXXXXXXXXXXXXXXXXXDKGVGADGGRAADGVTQLTLSPTK-SMATMRVSSPGSFASSPMARRATRLLTEVPKFIADMGGGS 235
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A2_ECTSI6.940e-7565.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:9036..10263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size684
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005090.1
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789981.410301-CDS-P-littoralis_Contig200:9035..92841680789981.410301-CDS-P-littoralis_Contig200:9035..9284Pylaiella littoralis U1_48CDSP-littoralis_Contig200 9036..9284 +
1680789981.4475992-CDS-P-littoralis_Contig200:9828..102631680789981.4475992-CDS-P-littoralis_Contig200:9828..10263Pylaiella littoralis U1_48CDSP-littoralis_Contig200 9829..10263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.2.1prot_P-littoralis_Contig200.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig200 9036..10263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig200.2.1

>prot_P-littoralis_Contig200.2.1 ID=prot_P-littoralis_Contig200.2.1|Name=mRNA_P-littoralis_Contig200.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
MYFSQRFDEEIEVLRERYGDVDQDALIVKLLLEEFRFTTVEAIDLPTLKK
RERDIGKVYLLGQSHFNQTPPPISVDMTSIKPKALEVVGDEQLSAVARET
LPANTKTSKKAVELMGSTKVVTEKKALKRLGSEMTDDMRALQVKTERKEQ
REAGEGVGAGAAAEAAAGAAAAAAAADGAGTHAGPRKISMVNMGIGPPGS
FATTPMARRATRLLNEVPKFISEIGGGS
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mRNA from alignment at P-littoralis_Contig200:9036..10263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig200.2.1 ID=mRNA_P-littoralis_Contig200.2.1|Name=mRNA_P-littoralis_Contig200.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1228bp|location=Sequence derived from alignment at P-littoralis_Contig200:9036..10263+ (Pylaiella littoralis U1_48)
ATGTACTTTTCACAGAGATTCGACGAAGAAATTGAGGTCCTGCGCGAAAG
GTACGGCGACGTGGACCAAGACGCCCTTATTGTCAAACTCCTCTTGGAAG
AATTCCGGTTCACCACCGTCGAGGCCATCGATCTCCCCACCCTCAAGAAG
CGAGAGCGAGACATCGGGAAGGTGTACCTACTCGGACAGTCGCACTTCAA
CCAGACCCCTCCCCCAATATCCGTGGACATGACCTCCATCAAACCTAAGG
TAAGCAAGAAAGGCGTCATGTTTTTTTTTTTATGCGGGTGGGTGGGATGG
GGTGGGGTAGGGCGGAACGAGTAGTACGCGAGCGAGCCCCTTAGCTGACA
TGTGTAGAGTTATTATGTTTCGGCGACATTTGTTGAAGCACACAGCTAGC
AACATTAGTAAATATATATATGTATACTCCGTATATGTATTGATCTTATG
TGTGTGTTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCTGCACCTT
GCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAG
GTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGA
GATTTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACCCTCGTCGGCGAAG
CCGAATCTTGTGTGTTCGTATGTGTGTGTGGCAACACAGACAAGACTACA
TGATAAATGGATGGGTTGATATATATTCATGAATGAAATGAGTGCATCCA
TGAATGTATGCAAAAATACGATCAAAACGCTTTTTCTGAACAGGCGCTTG
AAGTGGTGGGGGACGAACAACTGTCCGCGGTGGCGAGGGAAACTCTGCCG
GCCAACACCAAGACGAGCAAGAAGGCGGTCGAGCTCATGGGCTCCACCAA
GGTCGTCACCGAGAAGAAGGCGCTGAAACGCCTGGGGAGCGAGATGACCG
ATGACATGAGAGCACTGCAAGTGAAGACGGAGCGCAAGGAGCAGAGGGAA
GCCGGCGAGGGAGTGGGGGCGGGGGCGGCGGCGGAAGCGGCGGCGGGGGC
GGCGGCGGCGGCGGCGGCGGCAGACGGGGCAGGAACGCATGCGGGCCCGA
GAAAGATATCTATGGTGAACATGGGAATAGGCCCGCCAGGCTCTTTCGCG
ACGACACCAATGGCGAGACGAGCGACCCGACTGCTCAACGAGGTGCCCAA
GTTCATCAGCGAAATCGGAGGTGGAAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig200:9036..10263+

>mRNA_P-littoralis_Contig200.2.1 ID=mRNA_P-littoralis_Contig200.2.1|Name=mRNA_P-littoralis_Contig200.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig200:9036..10263+ (Pylaiella littoralis U1_48)
ATGTACTTTTCACAGAGATTCGACGAAGAAATTGAGGTCCTGCGCGAAAG
GTACGGCGACGTGGACCAAGACGCCCTTATTGTCAAACTCCTCTTGGAAG
AATTCCGGTTCACCACCGTCGAGGCCATCGATCTCCCCACCCTCAAGAAG
CGAGAGCGAGACATCGGGAAGGTGTACCTACTCGGACAGTCGCACTTCAA
CCAGACCCCTCCCCCAATATCCGTGGACATGACCTCCATCAAACCTAAGG
CGCTTGAAGTGGTGGGGGACGAACAACTGTCCGCGGTGGCGAGGGAAACT
CTGCCGGCCAACACCAAGACGAGCAAGAAGGCGGTCGAGCTCATGGGCTC
CACCAAGGTCGTCACCGAGAAGAAGGCGCTGAAACGCCTGGGGAGCGAGA
TGACCGATGACATGAGAGCACTGCAAGTGAAGACGGAGCGCAAGGAGCAG
AGGGAAGCCGGCGAGGGAGTGGGGGCGGGGGCGGCGGCGGAAGCGGCGGC
GGGGGCGGCGGCGGCGGCGGCGGCGGCAGACGGGGCAGGAACGCATGCGG
GCCCGAGAAAGATATCTATGGTGAACATGGGAATAGGCCCGCCAGGCTCT
TTCGCGACGACACCAATGGCGAGACGAGCGACCCGACTGCTCAACGAGGT
GCCCAAGTTCATCAGCGAAATCGGAGGTGGAAGC
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