mRNA_P-littoralis_Contig200.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig200.1.1
Unique NamemRNA_P-littoralis_Contig200.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig200.1.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 7.270e-40
Identity = 81/182 (44.51%), Postives = 112/182 (61.54%), Query Frame = 1 
Query:  175 SPLKRKQQGSNTAAKSRALFSAGNPDWPCLVFKDCPDGCLKVCLRKKDQKEYVTCDQNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYHGVFSHCAGARSHDGKTFKNATVASGDIVGKRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPP 720
            SP K+ +  S+T   S+  F AGNP WPC     C  G LK  + K +   +  CDQ    D  TC+V+ S+L A    P  CQLCL  VGG PS+G+ + EK+ +G   W N H  ++ C GA++ DG+ +KNAT+A+GDIVG+ C C +  + V +DI  GCTG+I+ G+ VVKDW+DPP
Sbjct:    5 SPAKKIKSSSST---SKRKFIAGNPLWPCPSIV-CVPGLLKA-VPKTNGGLFSPCDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRDEWLNIHACWTICCGAKTSDGEKYKNATLATGDIVGRACKCSNPASDV-EDITHGCTGEIEEGDYVVKDWIDPP 180
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BLAST of mRNA_P-littoralis_Contig200.1.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 5.970e-38
Identity = 82/182 (45.05%), Postives = 111/182 (60.99%), Query Frame = 1 
Query:  175 SPLKRKQQGSNTAAKSRALFSAGNPDWPCLVFKDCPDGCLKVCLRKKDQKEYVTCDQNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYHGVFSHCAGARSHDGKTFKNATVASGDIVGKRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPP 720
            SPLK+ +    +++K +  F AGNP WPC    +  DG LK   + K    +  CDQ   +D +TC+V+ S L     +P  C+LCL  VGG PS+G+ + EK D+G   W N H V+  CAGA + DG  +KNAT+A+G+IVG+ C C+D +  V  DI  GCTG I+ GE VVKDW DPP
Sbjct:    5 SPLKKIRTEEPSSSKRK--FLAGNPLWPCP--SNYCDGLLKKIPKTKGGF-FTPCDQKQSNDPNTCQVSCSFLSERGPNPVKCELCLTPVGGTPSLGVLSGEKTDQGRGEWLNIHAVWKLCAGATTSDGGKYKNATLATGEIVGRPCSCFDPEKNVD-DIKEGCTGDIQEGEYVVKDWTDPP 180
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BLAST of mRNA_P-littoralis_Contig200.1.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.710e-26
Identity = 63/118 (53.39%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:  154 MSALSKCSPLKRKQQ-GSNTAAKSRALFSAGNPDWPCLVFKDCPDGCLKVCLRKKDQKEYVTCDQNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTV 504
            M+ LSK SPLKRKQQ  S    K RAL + G   WPC    +  DG LKV ++KK+  +++TCDQN+W D+ +CKV+LS+L  S+DHPH C LCL DVGG PS+G  T E D RGY+ 
Sbjct:  624 MNTLSKASPLKRKQQQASAPIVKPRALLTLGVEGWPC-PDDNSTDGLLKV-VKKKNGGDFLTCDQNIWKDETSCKVSLSLLKPSQDHPHECSLCLKDVGGTPSLGTDTGETDSRGYSA 739
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BLAST of mRNA_P-littoralis_Contig200.1.1 vs. uniprot
Match: D7FZU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU8_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.340e-8
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:  511 NYHGVFSHCAGARSHDGKTFKNATVASGDIVGKRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPP 720
            N H V  HC  A++  GK  KNAT  +   +GK C+  D +  ++ D+ TGCTG I  G+LV+KDW DPP
Sbjct:   12 NVHAVEIHCVLAKTSGGKLLKNATPTTKKRIGKSCVRAD-ENNIADDLQTGCTGIISEGDLVIKDW-DPP 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JXZ5_9PHAE7.270e-4044.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE5.970e-3845.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4Z8_ECTSI3.710e-2653.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZU8_ECTSI1.340e-845.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:1599..5433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size1553
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2e-29
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size705
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.1.1prot_P-littoralis_Contig200.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig200 1752..3873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789981.3049078-UTR-P-littoralis_Contig200:1598..17511680789981.3049078-UTR-P-littoralis_Contig200:1598..1751Pylaiella littoralis U1_48UTRP-littoralis_Contig200 1599..1751 +
1680789981.3681016-UTR-P-littoralis_Contig200:3873..38851680789981.3681016-UTR-P-littoralis_Contig200:3873..3885Pylaiella littoralis U1_48UTRP-littoralis_Contig200 3874..3885 +
1680789981.3797584-UTR-P-littoralis_Contig200:4750..54331680789981.3797584-UTR-P-littoralis_Contig200:4750..5433Pylaiella littoralis U1_48UTRP-littoralis_Contig200 4751..5433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789981.3159778-CDS-P-littoralis_Contig200:1751..19731680789981.3159778-CDS-P-littoralis_Contig200:1751..1973Pylaiella littoralis U1_48CDSP-littoralis_Contig200 1752..1973 +
1680789981.3329406-CDS-P-littoralis_Contig200:2631..27581680789981.3329406-CDS-P-littoralis_Contig200:2631..2758Pylaiella littoralis U1_48CDSP-littoralis_Contig200 2632..2758 +
1680789981.3453743-CDS-P-littoralis_Contig200:2972..30761680789981.3453743-CDS-P-littoralis_Contig200:2972..3076Pylaiella littoralis U1_48CDSP-littoralis_Contig200 2973..3076 +
1680789981.3550658-CDS-P-littoralis_Contig200:3621..38731680789981.3550658-CDS-P-littoralis_Contig200:3621..3873Pylaiella littoralis U1_48CDSP-littoralis_Contig200 3622..3873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig200.1.1

>prot_P-littoralis_Contig200.1.1 ID=prot_P-littoralis_Contig200.1.1|Name=mRNA_P-littoralis_Contig200.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
MSALSKCSPLKRKQQGSNTAAKSRALFSAGNPDWPCLVFKDCPDGCLKVC
LRKKDQKEYVTCDQNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGY
PSIGIPTDEKDDRGYTVWENYHGVFSHCAGARSHDGKTFKNATVASGDIV
GKRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPPYTSSAPSASGG
RLSTTTFSRRRTSRTSAPHPGRKRPSPALPSRRL*
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mRNA from alignment at P-littoralis_Contig200:1599..5433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig200.1.1 ID=mRNA_P-littoralis_Contig200.1.1|Name=mRNA_P-littoralis_Contig200.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3835bp|location=Sequence derived from alignment at P-littoralis_Contig200:1599..5433+ (Pylaiella littoralis U1_48)
GGGCACACGCCTGTTCAGGAGGCGCGCGTCACTAAAAAGGGCACACGCCT
GTTCAGGAGGCACACGCGCTCCATGAGGCACACGCCCCCTGATTACCAAA
CATCACAAAGCGTCACACCCATCACATAGAGCACCAAACACTTTATAAGC
AGAATGAGCGCGTTGTCAAAGTGTTCACCACTGAAGCGCAAGCAGCAAGG
TAGCAACACGGCAGCCAAGTCTAGGGCTCTCTTCTCGGCTGGCAACCCAG
ACTGGCCCTGTCTGGTTTTCAAGGACTGCCCTGACGGGTGTCTGAAGGTC
TGCCTTCGCAAGAAAGATCAAAAAGAGTACGTCACCTGCGACCAAAACGT
GTGGAGCGACAAGGACACGTGCAAGGTATGACTACGGTTGGTTGTGTTGG
AAACGTGATCTGTGATTACCTTTTGCCCTCATTATCGTGATTGTGCTCTT
CGATCACCCTCACGAATGTTGAAGTGTTTGCATCCATGTCCTGTGTGTGC
TGCTGTGTTTTATTTTGCAGTCCCCCCGAGCACCACCGCCACCAGCACCT
TTCCCATGAATCTGTTGCTCGTTTGTTTCAGTGCTGCAGACCGTGTGTTG
CCGGTAACACTGCAGACCGGGTGTTGCCGGTAACAATGTGTCCGTGGATT
GCACGTGCTTTACCGCATGTGTGTTAGACTAATAATATTGTGAGCGCACT
TTTTCTTCATGCCTCGCACAATTCTTTAAGGTCGCGCTGTACCGCCACCA
GCACCTTTCCCATGAATCTGTTGCTTTTTTTTTTATGCCTCGCACATTTT
TTCACGGTCACGCTGTACCGCCACCAGCACCTTTCCCATGAATCTGTTGC
TCGTTTGTTGTGCTGCAGATCGTGTGTTGCTGGTAACACTGAGGTGTCCG
TCGATTGCATGTGCTTTCTGTGACCGTGCCTATTTCATGACCCTCACGGA
TGTTGTAATTTTTGCATCTGTTCCTCCCTCTTTCAACATTTTCAGCACTT
CGCTTTTTTTTTTCATGCCTCGCACATTTCAAGGTCACGCTGTCCATGCT
GCTCGCCAGCAAGGATCACCCGCACGGCTGCCAGCTGTGCCTGTGTGACG
TCGGGGGCTACCCTTCCATTGGTATCCCCACAGACGAGAAGGACGACCGT
GGCTACACCGGTGAGAGGTTGCTTCGTCCCGTTTTTTCCGTCGAGGTCAC
GCTGTACTGCCACCAACACCTTTCCCATGAATCTGTTGCTTTTTTTTTTA
TGCCTAGCACAATTTTTCAAGGTCACGCTGTACCGCCACCAGCACCTTTC
CCATTAATCTGTTGCTTTTTTTTTCATGCTGCTTTTCTCGTGTTTGTCCC
GTTCGGTACACATATTTTTGGCAGTGTGGGAGAACTACCACGGCGTCTTC
TCGCACTGCGCAGGAGCCAGGAGCCACGACGGCAAAACCTTCAAGAACGC
AACCGTCGCTAGCGGCGACATCGTCGGCGTAATTTGAACGGTTGCATGTC
ATGTCCGCCATGATGACCGTCGTATATGCTGTTTTTTTGCCATGTGATAA
AGAGACCTGCCCCCGTCTGTTTTTCCATTTTCTTTTTATATGCTGCTTTT
ACCCATGTAGTTAAAAAGAAAAAAGATCCGCCCCCGTCTATTATTTTTAT
AATAATTACGTATGCCGTTACACTGTACCTTTCTTCTTCCTCCCGCTTCC
ACCTGCCCCTCCCGCTCTCTATTTATTTCCCTCACCGTCGTTGACGGTGA
CATCATCGGCGTTAGTTGTACGGTTGCGTGTTGTCTCCGACATCATGACC
GTCATGCTGTTTTTTTGTCGCGTGATAAAGAAGACCTGCCCCCGTCTATT
TTTCCGTTTGCTTTTATATGCCGTTTTTATCCCATGTCGTTCAAAAGAGC
CGCCCCAGTCTATTTCTGCTATCATAATAACGTGCGCCGTAACTCTGTAC
CTCTTTCTCCCTCCCCCTTCGCCCTTCCCTCCCGCTCTCCCTCTATTTCC
CTTCCTCAATCCGAAAATAACAGAAGAGGTGCCTGTGCTGGGACGGAAAG
ACCGCCGTCTCTAAGGACATCAACACTGGGTGCACCGGCAAGATCAAGGC
CGGGGAGCTCGTGGTCAAGGACTGGGTGGACCCCCCCTACACCTCGTCTG
CTCCAAGCGCGAGTGGAGGAAGGCTATCGACCACCACTTTCAGCAGAAGA
AGGACTTCCAGGACCTCGGCACCACACCCGGGAAGGAAGCGGCCCAGCCC
TGCGCTGCCGTCCCGGCGGCTCTGAAGGACTTCTGAGGTACGATCTGTAT
CTGATTATACCGGGCTAACGCTCCCCTCAAATATACAACGAAACCTCAAA
TAACTTAATGGAACTTGATATATCGAGCAGCGATTCGGAAACTGACGTCA
AAGTGCCAAATGACGCTGCAGCTCAGCGCAGAAGCAGGCGCGCAGCTTTA
ATAGCAGATTGACGACCCGGAGGTGAAATTCGAAACATACAACATCGAAT
CTGCAACAATGCATGTCATCGCAGAAGCAGGCGCCCTGCCATTATCGCCG
CACGTCGCGCATCCGGTCAAATTCGCATTCGCGCCGTCAACGATACATCA
TCACCATCTCTCCCTCCTTCCCCTAATCCTCCACCGCCTACTTTACCTCC
TCCACCACCACAACCTGTATGGACTGTTCAGCATGAGATTGGTGACGGAG
CTTGCGGCTTTCGAGCAATTGCTAGACGTTTCCTCGGTGATCCTGAGTTG
CACGTACAAGCACGACATCAAATTGTACTGTACCTTGCACACAACAGTCA
GGACGACAACCTGCACATCCACGACGGCATTGACACAAAACTTCTTCTTT
ACTGTTCAGGTTCACCGCCCTCTACATACTCCTCTTAAAACGACTACCTC
TCAAGAATGTCCATGCCTACCACGTACATGGGCCAACCCGAAATTACTGC
TGCCATCGCAGTCTATGGAACCCCTATAATTCCACACTTCCAAAGTCCAA
CCTTACCGCACCCAGCCATCGCTGATCTCAATGAACTTCACTTAAGGTTC
ACGCCTACCTCACGTCATTACGACACCTTCACCCTGTCAAACCCTGCCGC
TCACTCCTAACATAACCCGTTACGATTCAACGGTCCACTTTTTCCTGTTC
AGGGCGACTCCACAAGCGCGGAGTCGACTCCTCGCGACACCCTGATGACG
GTCTCACGGTGTATGTGCTGACAGGGTCGGGCAACTTCGGGGCTGTGTCG
TTCTGTACCTGGAACTACCTGCTTGCCGATAGACACAACCACCAGGCGTG
CCGCACGACGTCTACGTGGACTATATTTTGGTCAACACACCCATCGCATT
TTGAGCGATGATTCTTTATTCGTCGGTATCAATGCCGTACGCTGGGAACT
TCCGGTTACCTCTTACAGTAGTTCTGCCTTAGACGTACCTTTGCCTCGTT
ACTACGGAGTACTACGTAACATTTCGTTAGAGTGTTTCCGTTTCCTTGGC
GCGTTCTGTCGCCCAACTTTGCGGTATATTTCTCCTCAGCTTTTCCGCTT
TTCAGCGTTGGTTTCCTGTTGTCTTCGGTGCCTTTGGTTTCTGTTCCTTC
AGTGTACATGTTCAGGTCTCATGATCTTTTCGTTACGCTTCCACTTTTTT
CGGCGTTGGTTTCCTGTTGTGTTCAGTACCTTTAGCGTTGCACCTTTCGC
TGTCGATGCTCATCAGCATAATCTTTTTGTTTCCTTCGCGTCTTCTGTCG
CCTTCAGTGTACACGTTCAGGTCGCCATGATATTTTCGTGACGCTTCCAC
TTCTTTCGGCGTAGGTTTCCTGTTGTGTTCAGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig200:1599..5433+

>mRNA_P-littoralis_Contig200.1.1 ID=mRNA_P-littoralis_Contig200.1.1|Name=mRNA_P-littoralis_Contig200.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig200:1599..5433+ (Pylaiella littoralis U1_48)
ATGAGCGCGTTGTCAAAGTGTTCACCACTGAAGCGCAAGCAGCAAGGTAG
CAACACGGCAGCCAAGTCTAGGGCTCTCTTCTCGGCTGGCAACCCAGACT
GGCCCTGTCTGGTTTTCAAGGACTGCCCTGACGGGTGTCTGAAGGTCTGC
CTTCGCAAGAAAGATCAAAAAGAGTACGTCACCTGCGACCAAAACGTGTG
GAGCGACAAGGACACGTGCAAGGTCACGCTGTCCATGCTGCTCGCCAGCA
AGGATCACCCGCACGGCTGCCAGCTGTGCCTGTGTGACGTCGGGGGCTAC
CCTTCCATTGGTATCCCCACAGACGAGAAGGACGACCGTGGCTACACCGT
GTGGGAGAACTACCACGGCGTCTTCTCGCACTGCGCAGGAGCCAGGAGCC
ACGACGGCAAAACCTTCAAGAACGCAACCGTCGCTAGCGGCGACATCGTC
GGCAAGAGGTGCCTGTGCTGGGACGGAAAGACCGCCGTCTCTAAGGACAT
CAACACTGGGTGCACCGGCAAGATCAAGGCCGGGGAGCTCGTGGTCAAGG
ACTGGGTGGACCCCCCCTACACCTCGTCTGCTCCAAGCGCGAGTGGAGGA
AGGCTATCGACCACCACTTTCAGCAGAAGAAGGACTTCCAGGACCTCGGC
ACCACACCCGGGAAGGAAGCGGCCCAGCCCTGCGCTGCCGTCCCGGCGGC
TCTGA
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